TuringModels

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Results with Julia v1.2.0

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 Resolving package versions...
 Installed DataAPI ───────────────────── v1.1.0
 Installed Missings ──────────────────── v0.4.3
 Installed Showoff ───────────────────── v0.3.1
 Installed TableTraits ───────────────── v1.0.0
 Installed NearestNeighbors ──────────── v0.4.4
 Installed DataFrames ────────────────── v0.19.4
 Installed TuringModels ──────────────── v1.0.0
 Installed CSV ───────────────────────── v0.5.18
 Installed PDMats ────────────────────── v0.9.10
 Installed LineSearches ──────────────── v7.0.1
 Installed DistributionsAD ───────────── v0.1.1
 Installed BinaryProvider ────────────── v0.5.8
 Installed AbstractFFTs ──────────────── v0.4.1
 Installed Colors ────────────────────── v0.9.6
 Installed Contour ───────────────────── v0.5.1
 Installed StatsBase ─────────────────── v0.32.0
 Installed CommonSubexpressions ──────── v0.2.0
 Installed FiniteDifferences ─────────── v0.9.0
 Installed Conda ─────────────────────── v1.3.0
 Installed RangeArrays ───────────────── v0.3.1
 Installed Tracker ───────────────────── v0.2.5
 Installed Measures ──────────────────── v0.3.0
 Installed Plots ─────────────────────── v0.28.2
 Installed StatsFuns ─────────────────── v0.8.0
 Installed ArrayLayouts ──────────────── v0.1.5
 Installed Adapt ─────────────────────── v1.0.0
 Installed URIParser ─────────────────── v0.4.0
 Installed Polynomials ───────────────── v0.6.0
 Installed AxisAlgorithms ────────────── v1.0.0
 Installed IRTools ───────────────────── v0.3.0
 Installed NLSolversBase ─────────────── v7.5.0
 Installed Zygote ────────────────────── v0.4.1
 Installed Requires ──────────────────── v0.5.2
 Installed DataValueInterfaces ───────── v1.0.0
 Installed InplaceOps ────────────────── v0.3.0
 Installed InvertedIndices ───────────── v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed Reexport ──────────────────── v0.2.0
 Installed TimerOutputs ──────────────── v0.5.3
 Installed Compat ────────────────────── v2.2.0
 Installed Libtask ───────────────────── v0.3.1
 Installed OffsetArrays ──────────────── v0.11.2
 Installed Widgets ───────────────────── v0.6.2
 Installed ForwardDiff ───────────────── v0.10.7
 Installed OrderedCollections ────────── v1.1.0
 Installed Observables ───────────────── v0.2.3
 Installed Rmath ─────────────────────── v0.6.0
 Installed Tables ────────────────────── v0.2.11
 Installed NNlib ─────────────────────── v0.6.0
 Installed IterTools ─────────────────── v1.3.0
 Installed Calculus ──────────────────── v0.5.1
 Installed MappedArrays ──────────────── v0.2.2
 Installed FilePathsBase ─────────────── v0.7.0
 Installed KernelDensity ─────────────── v0.5.1
 Installed AdvancedHMC ───────────────── v0.2.14
 Installed Roots ─────────────────────── v0.8.3
 Installed Combinatorics ─────────────── v1.0.0
 Installed RecipesBase ───────────────── v0.7.0
 Installed ArgCheck ──────────────────── v1.0.1
 Installed FixedPointNumbers ─────────── v0.6.1
 Installed DataStructures ────────────── v0.17.6
 Installed WeakRefStrings ────────────── v0.6.1
 Installed Turing ────────────────────── v0.7.1
 Installed Distributions ─────────────── v0.21.9
 Installed FillArrays ────────────────── v0.8.2
 Installed Parsers ───────────────────── v0.3.10
 Installed DiffEqDiffTools ───────────── v1.5.0
 Installed DiffRules ─────────────────── v0.1.0
 Installed Ratios ────────────────────── v0.3.1
 Installed JSON ──────────────────────── v0.21.0
 Installed StatsPlots ────────────────── v0.12.0
 Installed FFMPEG ────────────────────── v0.2.3
 Installed ArrayInterface ────────────── v2.0.0
 Installed NaNMath ───────────────────── v0.3.3
 Installed StaticArrays ──────────────── v0.12.1
 Installed Interpolations ────────────── v0.12.5
 Installed MCMCChains ────────────────── v0.3.15
 Installed Parameters ────────────────── v0.12.0
 Installed DiffResults ───────────────── v0.0.4
 Installed FFTW ──────────────────────── v1.0.1
 Installed IntervalSets ──────────────── v0.3.2
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed GeometryTypes ─────────────── v0.7.6
 Installed QuadGK ────────────────────── v2.1.1
 Installed CategoricalArrays ─────────── v0.7.3
 Installed WoodburyMatrices ──────────── v0.4.1
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed PlotUtils ─────────────────── v0.6.1
 Installed DataValues ────────────────── v0.4.12
 Installed Clustering ────────────────── v0.13.3
 Installed VersionParsing ────────────── v1.1.3
 Installed Bijectors ─────────────────── v0.4.0
 Installed LazyArrays ────────────────── v0.14.10
 Installed MacroTools ────────────────── v0.5.2
 Installed ZygoteRules ───────────────── v0.2.0
 Installed ColorTypes ────────────────── v0.8.0
 Installed Distances ─────────────────── v0.8.2
 Installed PositiveFactorizations ────── v0.2.3
 Installed AxisArrays ────────────────── v0.3.3
 Installed SpecialFunctions ──────────── v0.8.0
 Installed PlotThemes ────────────────── v1.0.0
 Installed GR ────────────────────────── v0.44.0
 Installed Optim ─────────────────────── v0.19.5
 Installed ProgressMeter ─────────────── v1.2.0
 Installed BinDeps ───────────────────── v0.8.10
 Installed Arpack ────────────────────── v0.3.1
  Updating `~/.julia/environments/v1.2/Project.toml`
  [ead7e11d] + TuringModels v1.0.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [621f4979] + AbstractFFTs v0.4.1
  [79e6a3ab] + Adapt v1.0.0
  [0bf59076] + AdvancedHMC v0.2.14
  [dce04be8] + ArgCheck v1.0.1
  [7d9fca2a] + Arpack v0.3.1
  [4fba245c] + ArrayInterface v2.0.0
  [4c555306] + ArrayLayouts v0.1.5
  [13072b0f] + AxisAlgorithms v1.0.0
  [39de3d68] + AxisArrays v0.3.3
  [76274a88] + Bijectors v0.4.0
  [9e28174c] + BinDeps v0.8.10
  [b99e7846] + BinaryProvider v0.5.8
  [336ed68f] + CSV v0.5.18
  [49dc2e85] + Calculus v0.5.1
  [324d7699] + CategoricalArrays v0.7.3
  [aaaa29a8] + Clustering v0.13.3
  [3da002f7] + ColorTypes v0.8.0
  [5ae59095] + Colors v0.9.6
  [861a8166] + Combinatorics v1.0.0
  [bbf7d656] + CommonSubexpressions v0.2.0
  [34da2185] + Compat v2.2.0
  [8f4d0f93] + Conda v1.3.0
  [d38c429a] + Contour v0.5.1
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.12
  [01453d9d] + DiffEqDiffTools v1.5.0
  [163ba53b] + DiffResults v0.0.4
  [b552c78f] + DiffRules v0.1.0
  [b4f34e82] + Distances v0.8.2
  [31c24e10] + Distributions v0.21.9
  [ced4e74d] + DistributionsAD v0.1.1
  [c87230d0] + FFMPEG v0.2.3
  [7a1cc6ca] + FFTW v1.0.1
  [48062228] + FilePathsBase v0.7.0
  [1a297f60] + FillArrays v0.8.2
  [26cc04aa] + FiniteDifferences v0.9.0
  [53c48c17] + FixedPointNumbers v0.6.1
  [f6369f11] + ForwardDiff v0.10.7
  [28b8d3ca] + GR v0.44.0
  [4d00f742] + GeometryTypes v0.7.6
  [7869d1d1] + IRTools v0.3.0
  [505f98c9] + InplaceOps v0.3.0
  [a98d9a8b] + Interpolations v0.12.5
  [8197267c] + IntervalSets v0.3.2
  [41ab1584] + InvertedIndices v1.0.0
  [c8e1da08] + IterTools v1.3.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [5ab0869b] + KernelDensity v0.5.1
  [5078a376] + LazyArrays v0.14.10
  [6f1fad26] + Libtask v0.3.1
  [d3d80556] + LineSearches v7.0.1
  [c7f686f2] + MCMCChains v0.3.15
  [1914dd2f] + MacroTools v0.5.2
  [dbb5928d] + MappedArrays v0.2.2
  [442fdcdd] + Measures v0.3.0
  [e1d29d7a] + Missings v0.4.3
  [d41bc354] + NLSolversBase v7.5.0
  [872c559c] + NNlib v0.6.0
  [77ba4419] + NaNMath v0.3.3
  [b8a86587] + NearestNeighbors v0.4.4
  [510215fc] + Observables v0.2.3
  [6fe1bfb0] + OffsetArrays v0.11.2
  [429524aa] + Optim v0.19.5
  [bac558e1] + OrderedCollections v1.1.0
  [90014a1f] + PDMats v0.9.10
  [d96e819e] + Parameters v0.12.0
  [69de0a69] + Parsers v0.3.10
  [ccf2f8ad] + PlotThemes v1.0.0
  [995b91a9] + PlotUtils v0.6.1
  [91a5bcdd] + Plots v0.28.2
  [f27b6e38] + Polynomials v0.6.0
  [2dfb63ee] + PooledArrays v0.5.2
  [85a6dd25] + PositiveFactorizations v0.2.3
  [92933f4c] + ProgressMeter v1.2.0
  [1fd47b50] + QuadGK v2.1.1
  [b3c3ace0] + RangeArrays v0.3.1
  [c84ed2f1] + Ratios v0.3.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v0.5.2
  [79098fc4] + Rmath v0.6.0
  [f2b01f46] + Roots v0.8.3
  [992d4aef] + Showoff v0.3.1
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.8.0
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.8.0
  [f3b207a7] + StatsPlots v0.12.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [a759f4b9] + TimerOutputs v0.5.3
  [9f7883ad] + Tracker v0.2.5
  [fce5fe82] + Turing v0.7.1
  [ead7e11d] + TuringModels v1.0.0
  [30578b45] + URIParser v0.4.0
  [81def892] + VersionParsing v1.1.3
  [ea10d353] + WeakRefStrings v0.6.1
  [cc8bc4a8] + Widgets v0.6.2
  [efce3f68] + WoodburyMatrices v0.4.1
  [e88e6eb3] + Zygote v0.4.1
  [700de1a5] + ZygoteRules v0.2.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
  Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
  Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
  Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
  Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
  Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
  Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
  Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
   Testing TuringModels
    Status `/tmp/jl_cQiWGe/Manifest.toml`
  [621f4979] AbstractFFTs v0.4.1
  [79e6a3ab] Adapt v1.0.0
  [0bf59076] AdvancedHMC v0.2.14
  [dce04be8] ArgCheck v1.0.1
  [7d9fca2a] Arpack v0.3.1
  [4fba245c] ArrayInterface v2.0.0
  [4c555306] ArrayLayouts v0.1.5
  [13072b0f] AxisAlgorithms v1.0.0
  [39de3d68] AxisArrays v0.3.3
  [76274a88] Bijectors v0.4.0
  [9e28174c] BinDeps v0.8.10
  [b99e7846] BinaryProvider v0.5.8
  [336ed68f] CSV v0.5.18
  [49dc2e85] Calculus v0.5.1
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [3da002f7] ColorTypes v0.8.0
  [5ae59095] Colors v0.9.6
  [861a8166] Combinatorics v1.0.0
  [bbf7d656] CommonSubexpressions v0.2.0
  [34da2185] Compat v2.2.0
  [8f4d0f93] Conda v1.3.0
  [d38c429a] Contour v0.5.1
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [e7dc6d0d] DataValues v0.4.12
  [01453d9d] DiffEqDiffTools v1.5.0
  [163ba53b] DiffResults v0.0.4
  [b552c78f] DiffRules v0.1.0
  [b4f34e82] Distances v0.8.2
  [31c24e10] Distributions v0.21.9
  [ced4e74d] DistributionsAD v0.1.1
  [c87230d0] FFMPEG v0.2.3
  [7a1cc6ca] FFTW v1.0.1
  [48062228] FilePathsBase v0.7.0
  [1a297f60] FillArrays v0.8.2
  [26cc04aa] FiniteDifferences v0.9.0
  [53c48c17] FixedPointNumbers v0.6.1
  [f6369f11] ForwardDiff v0.10.7
  [28b8d3ca] GR v0.44.0
  [4d00f742] GeometryTypes v0.7.6
  [7869d1d1] IRTools v0.3.0
  [505f98c9] InplaceOps v0.3.0
  [a98d9a8b] Interpolations v0.12.5
  [8197267c] IntervalSets v0.3.2
  [41ab1584] InvertedIndices v1.0.0
  [c8e1da08] IterTools v1.3.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [5ab0869b] KernelDensity v0.5.1
  [5078a376] LazyArrays v0.14.10
  [6f1fad26] Libtask v0.3.1
  [d3d80556] LineSearches v7.0.1
  [c7f686f2] MCMCChains v0.3.15
  [1914dd2f] MacroTools v0.5.2
  [dbb5928d] MappedArrays v0.2.2
  [442fdcdd] Measures v0.3.0
  [e1d29d7a] Missings v0.4.3
  [d41bc354] NLSolversBase v7.5.0
  [872c559c] NNlib v0.6.0
  [77ba4419] NaNMath v0.3.3
  [b8a86587] NearestNeighbors v0.4.4
  [510215fc] Observables v0.2.3
  [6fe1bfb0] OffsetArrays v0.11.2
  [429524aa] Optim v0.19.5
  [bac558e1] OrderedCollections v1.1.0
  [90014a1f] PDMats v0.9.10
  [d96e819e] Parameters v0.12.0
  [69de0a69] Parsers v0.3.10
  [ccf2f8ad] PlotThemes v1.0.0
  [995b91a9] PlotUtils v0.6.1
  [91a5bcdd] Plots v0.28.2
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [85a6dd25] PositiveFactorizations v0.2.3
  [92933f4c] ProgressMeter v1.2.0
  [1fd47b50] QuadGK v2.1.1
  [b3c3ace0] RangeArrays v0.3.1
  [c84ed2f1] Ratios v0.3.1
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v0.5.2
  [79098fc4] Rmath v0.6.0
  [f2b01f46] Roots v0.8.3
  [992d4aef] Showoff v0.3.1
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [4c63d2b9] StatsFuns v0.8.0
  [f3b207a7] StatsPlots v0.12.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [a759f4b9] TimerOutputs v0.5.3
  [9f7883ad] Tracker v0.2.5
  [fce5fe82] Turing v0.7.1
  [ead7e11d] TuringModels v1.0.0
  [30578b45] URIParser v0.4.0
  [81def892] VersionParsing v1.1.3
  [ea10d353] WeakRefStrings v0.6.1
  [cc8bc4a8] Widgets v0.6.2
  [efce3f68] WoodburyMatrices v0.4.1
  [e88e6eb3] Zygote v0.4.1
  [700de1a5] ZygoteRules v0.2.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [4607b0f0] SuiteSparse  [`@stdlib/SuiteSparse`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
┌ Warning: `lgamma(x::Real)` is deprecated, use `(logabsgamma(x))[1]` instead.
│   caller = lstirling_asym(::BigFloat) at misc.jl:56
└ @ StatsFuns ~/.julia/packages/StatsFuns/2QE7p/src/misc.jl:56
  Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
 Resolving package versions...
┌ Info: Found initial step size
└   ϵ = 3.2

Sampling   0%|                               |  ETA: 1:18:28[K
  iterations:                    1
  n_steps:                       1
  is_accept:                     true
  acceptance_rate:               0.0
  log_density:                   -6.3417958363948195
  hamiltonian_energy:            7.176854684291775
  hamiltonian_energy_error:      0.0
  max_hamiltonian_energy_error:  3.836734382827653e14
  tree_depth:                    0
  numerical_error:               true
  step_size:                     3.2
  nom_step_size:                 3.2
  mass_matrix:                   DiagEuclideanMetric([1.0, 1.0])
[A
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[K[A
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Sampling 100%|███████████████████████████████| Time: 0:00:05[K
  iterations:                    1000
  n_steps:                       3
  is_accept:                     true
  acceptance_rate:               0.7278752699305272
  log_density:                   -5.51173122990928
  hamiltonian_energy:            5.943366952370716
  hamiltonian_energy_error:      0.057462590324984575
  max_hamiltonian_energy_error:  1.4293329794890308
  tree_depth:                    1
  numerical_error:               false
  step_size:                     0.7177588680932081
  nom_step_size:                 0.7177588680932081
  mass_matrix:                   DiagEuclideanMetric([1.0, 1.0])
2-element Array{ChainDataFrame,1}

Summary Statistics

│ Row │ parameters                   │ mean      │ std         │ naive_se    │ mcse      │ ess     │ r_hat    │
│     │ Symbol                       │ Float64   │ Float64     │ Float64     │ Float64   │ Any     │ Any      │
├─────┼──────────────────────────────┼───────────┼─────────────┼─────────────┼───────────┼─────────┼──────────┤
│ 1   │ hamiltonian_energy_error     │ 0.0255887 │ 0.605567    │ 0.0270818   │ 0.0189698 │ 923.085 │ 0.998714 │
│ 2   │ m                            │ 1.14646   │ 0.819125    │ 0.0366324   │ 0.0543962 │ 224.359 │ 1.01244  │
│ 3   │ max_hamiltonian_energy_error │ 3.88465   │ 24.9367     │ 1.1152      │ 0.666567  │ 517.448 │ 0.999448 │
│ 4   │ nom_step_size                │ 0.717759  │ 5.00101e-15 │ 2.23652e-16 │ 0.0       │ 2.00803 │ 5.73306  │
│ 5   │ s                            │ 2.1076    │ 1.90935     │ 0.0853887   │ 0.187863  │ 207.106 │ 0.998534 │

Quantiles

│ Row │ parameters                   │ 2.5%      │ 25.0%     │ 50.0%    │ 75.0%    │ 97.5%    │
│     │ Symbol                       │ Float64   │ Float64   │ Float64  │ Float64  │ Float64  │
├─────┼──────────────────────────────┼───────────┼───────────┼──────────┼──────────┼──────────┤
│ 1   │ hamiltonian_energy_error     │ -1.23037  │ -0.150986 │ 0.0      │ 0.163946 │ 1.3281   │
│ 2   │ m                            │ -0.401345 │ 0.680805  │ 1.15469  │ 1.67456  │ 2.69193  │
│ 3   │ max_hamiltonian_energy_error │ -1.08678  │ -0.153853 │ 0.405594 │ 1.43235  │ 27.6909  │
│ 4   │ nom_step_size                │ 0.717759  │ 0.717759  │ 0.717759 │ 0.717759 │ 0.717759 │
│ 5   │ s                            │ 0.57771   │ 1.09485   │ 1.66995  │ 2.47157  │ 6.60279  │
Test Summary: |
TuringModels  | No tests
   Testing TuringModels tests passed

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 17 minutes, 10 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed PlotThemes ────────────────── v1.0.0
 Installed KernelDensity ─────────────── v0.5.1
 Installed Ratios ────────────────────── v0.3.1
 Installed URIParser ─────────────────── v0.4.0
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed Arpack ────────────────────── v0.3.1
 Installed FiniteDifferences ─────────── v0.9.0
 Installed TuringModels ──────────────── v1.0.0
 Installed DiffResults ───────────────── v0.0.4
 Installed AxisAlgorithms ────────────── v1.0.0
 Installed DataStructures ────────────── v0.17.6
 Installed StatsPlots ────────────────── v0.12.0
 Installed NNlib ─────────────────────── v0.6.0
 Installed LazyArrays ────────────────── v0.14.10
 Installed Turing ────────────────────── v0.7.1
 Installed StaticArrays ──────────────── v0.12.1
 Installed FFTW ──────────────────────── v1.0.1
 Installed Tracker ───────────────────── v0.2.5
 Installed LineSearches ──────────────── v7.0.1
 Installed Roots ─────────────────────── v0.8.3
 Installed QuadGK ────────────────────── v2.1.1
 Installed Compat ────────────────────── v2.2.0
 Installed CategoricalArrays ─────────── v0.7.3
 Installed StatsFuns ─────────────────── v0.8.0
 Installed BinaryProvider ────────────── v0.5.8
 Installed MCMCChains ────────────────── v0.3.15
 Installed InvertedIndices ───────────── v1.0.0
 Installed CSV ───────────────────────── v0.5.18
 Installed Parsers ───────────────────── v0.3.10
 Installed NLSolversBase ─────────────── v7.5.0
 Installed ProgressMeter ─────────────── v1.2.0
 Installed Combinatorics ─────────────── v1.0.0
 Installed IterTools ─────────────────── v1.3.0
 Installed Missings ──────────────────── v0.4.3
 Installed NearestNeighbors ──────────── v0.4.4
 Installed MacroTools ────────────────── v0.5.2
 Installed Distributions ─────────────── v0.21.9
 Installed Rmath ─────────────────────── v0.6.0
 Installed Bijectors ─────────────────── v0.4.0
 Installed RangeArrays ───────────────── v0.3.1
 Installed TableTraits ───────────────── v1.0.0
 Installed Parameters ────────────────── v0.12.0
 Installed PositiveFactorizations ────── v0.2.3
 Installed FixedPointNumbers ─────────── v0.6.1
 Installed Observables ───────────────── v0.2.3
 Installed IntervalSets ──────────────── v0.3.2
 Installed Plots ─────────────────────── v0.28.2
 Installed SpecialFunctions ──────────── v0.8.0
 Installed ArgCheck ──────────────────── v1.0.1
 Installed ArrayLayouts ──────────────── v0.1.5
 Installed OrderedCollections ────────── v1.1.0
 Installed Showoff ───────────────────── v0.3.1
 Installed TimerOutputs ──────────────── v0.5.3
 Installed JSON ──────────────────────── v0.21.0
 Installed CommonSubexpressions ──────── v0.2.0
 Installed DistributionsAD ───────────── v0.1.1
 Installed PlotUtils ─────────────────── v0.6.1
 Installed InplaceOps ────────────────── v0.3.0
 Installed ColorTypes ────────────────── v0.8.0
 Installed BinDeps ───────────────────── v0.8.10
 Installed AdvancedHMC ───────────────── v0.2.14
 Installed RecipesBase ───────────────── v0.7.0
 Installed Interpolations ────────────── v0.12.5
 Installed DataAPI ───────────────────── v1.1.0
 Installed Distances ─────────────────── v0.8.2
 Installed Tables ────────────────────── v0.2.11
 Installed Polynomials ───────────────── v0.6.0
 Installed ForwardDiff ───────────────── v0.10.7
 Installed Libtask ───────────────────── v0.3.1
 Installed NaNMath ───────────────────── v0.3.3
 Installed DataValueInterfaces ───────── v1.0.0
 Installed IRTools ───────────────────── v0.3.0
 Installed Adapt ─────────────────────── v1.0.0
 Installed Zygote ────────────────────── v0.4.1
 Installed Optim ─────────────────────── v0.19.5
 Installed DataValues ────────────────── v0.4.12
 Installed DiffRules ─────────────────── v0.1.0
 Installed Calculus ──────────────────── v0.5.1
 Installed DiffEqDiffTools ───────────── v1.5.0
 Installed Colors ────────────────────── v0.9.6
 Installed Requires ──────────────────── v0.5.2
 Installed ArrayInterface ────────────── v2.0.0
 Installed Conda ─────────────────────── v1.3.0
 Installed VersionParsing ────────────── v1.1.3
 Installed FilePathsBase ─────────────── v0.7.0
 Installed Measures ──────────────────── v0.3.0
 Installed Widgets ───────────────────── v0.6.2
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed Contour ───────────────────── v0.5.1
 Installed GR ────────────────────────── v0.44.0
 Installed GeometryTypes ─────────────── v0.7.6
 Installed WeakRefStrings ────────────── v0.6.1
 Installed MappedArrays ──────────────── v0.2.2
 Installed PooledArrays ──────────────── v0.5.2
 Installed FFMPEG ────────────────────── v0.2.3
 Installed OffsetArrays ──────────────── v0.11.2
 Installed FillArrays ────────────────── v0.8.2
 Installed DataFrames ────────────────── v0.19.4
 Installed PDMats ────────────────────── v0.9.10
 Installed AxisArrays ────────────────── v0.3.3
 Installed Clustering ────────────────── v0.13.3
 Installed StatsBase ─────────────────── v0.32.0
 Installed AbstractFFTs ──────────────── v0.4.1
 Installed WoodburyMatrices ──────────── v0.4.1
 Installed ZygoteRules ───────────────── v0.2.0
 Installed Reexport ──────────────────── v0.2.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [ead7e11d] + TuringModels v1.0.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [621f4979] + AbstractFFTs v0.4.1
  [79e6a3ab] + Adapt v1.0.0
  [0bf59076] + AdvancedHMC v0.2.14
  [dce04be8] + ArgCheck v1.0.1
  [7d9fca2a] + Arpack v0.3.1
  [4fba245c] + ArrayInterface v2.0.0
  [4c555306] + ArrayLayouts v0.1.5
  [13072b0f] + AxisAlgorithms v1.0.0
  [39de3d68] + AxisArrays v0.3.3
  [76274a88] + Bijectors v0.4.0
  [9e28174c] + BinDeps v0.8.10
  [b99e7846] + BinaryProvider v0.5.8
  [336ed68f] + CSV v0.5.18
  [49dc2e85] + Calculus v0.5.1
  [324d7699] + CategoricalArrays v0.7.3
  [aaaa29a8] + Clustering v0.13.3
  [3da002f7] + ColorTypes v0.8.0
  [5ae59095] + Colors v0.9.6
  [861a8166] + Combinatorics v1.0.0
  [bbf7d656] + CommonSubexpressions v0.2.0
  [34da2185] + Compat v2.2.0
  [8f4d0f93] + Conda v1.3.0
  [d38c429a] + Contour v0.5.1
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.12
  [01453d9d] + DiffEqDiffTools v1.5.0
  [163ba53b] + DiffResults v0.0.4
  [b552c78f] + DiffRules v0.1.0
  [b4f34e82] + Distances v0.8.2
  [31c24e10] + Distributions v0.21.9
  [ced4e74d] + DistributionsAD v0.1.1
  [c87230d0] + FFMPEG v0.2.3
  [7a1cc6ca] + FFTW v1.0.1
  [48062228] + FilePathsBase v0.7.0
  [1a297f60] + FillArrays v0.8.2
  [26cc04aa] + FiniteDifferences v0.9.0
  [53c48c17] + FixedPointNumbers v0.6.1
  [f6369f11] + ForwardDiff v0.10.7
  [28b8d3ca] + GR v0.44.0
  [4d00f742] + GeometryTypes v0.7.6
  [7869d1d1] + IRTools v0.3.0
  [505f98c9] + InplaceOps v0.3.0
  [a98d9a8b] + Interpolations v0.12.5
  [8197267c] + IntervalSets v0.3.2
  [41ab1584] + InvertedIndices v1.0.0
  [c8e1da08] + IterTools v1.3.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [5ab0869b] + KernelDensity v0.5.1
  [5078a376] + LazyArrays v0.14.10
  [6f1fad26] + Libtask v0.3.1
  [d3d80556] + LineSearches v7.0.1
  [c7f686f2] + MCMCChains v0.3.15
  [1914dd2f] + MacroTools v0.5.2
  [dbb5928d] + MappedArrays v0.2.2
  [442fdcdd] + Measures v0.3.0
  [e1d29d7a] + Missings v0.4.3
  [d41bc354] + NLSolversBase v7.5.0
  [872c559c] + NNlib v0.6.0
  [77ba4419] + NaNMath v0.3.3
  [b8a86587] + NearestNeighbors v0.4.4
  [510215fc] + Observables v0.2.3
  [6fe1bfb0] + OffsetArrays v0.11.2
  [429524aa] + Optim v0.19.5
  [bac558e1] + OrderedCollections v1.1.0
  [90014a1f] + PDMats v0.9.10
  [d96e819e] + Parameters v0.12.0
  [69de0a69] + Parsers v0.3.10
  [ccf2f8ad] + PlotThemes v1.0.0
  [995b91a9] + PlotUtils v0.6.1
  [91a5bcdd] + Plots v0.28.2
  [f27b6e38] + Polynomials v0.6.0
  [2dfb63ee] + PooledArrays v0.5.2
  [85a6dd25] + PositiveFactorizations v0.2.3
  [92933f4c] + ProgressMeter v1.2.0
  [1fd47b50] + QuadGK v2.1.1
  [b3c3ace0] + RangeArrays v0.3.1
  [c84ed2f1] + Ratios v0.3.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v0.5.2
  [79098fc4] + Rmath v0.6.0
  [f2b01f46] + Roots v0.8.3
  [992d4aef] + Showoff v0.3.1
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.8.0
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.8.0
  [f3b207a7] + StatsPlots v0.12.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [a759f4b9] + TimerOutputs v0.5.3
  [9f7883ad] + Tracker v0.2.5
  [fce5fe82] + Turing v0.7.1
  [ead7e11d] + TuringModels v1.0.0
  [30578b45] + URIParser v0.4.0
  [81def892] + VersionParsing v1.1.3
  [ea10d353] + WeakRefStrings v0.6.1
  [cc8bc4a8] + Widgets v0.6.2
  [efce3f68] + WoodburyMatrices v0.4.1
  [e88e6eb3] + Zygote v0.4.1
  [700de1a5] + ZygoteRules v0.2.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
  Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
  Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
  Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
  Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
  Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
  Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
  Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
   Testing TuringModels
    Status `/tmp/jl_CTkIGe/Manifest.toml`
  [621f4979] AbstractFFTs v0.4.1
  [79e6a3ab] Adapt v1.0.0
  [0bf59076] AdvancedHMC v0.2.14
  [dce04be8] ArgCheck v1.0.1
  [7d9fca2a] Arpack v0.3.1
  [4fba245c] ArrayInterface v2.0.0
  [4c555306] ArrayLayouts v0.1.5
  [13072b0f] AxisAlgorithms v1.0.0
  [39de3d68] AxisArrays v0.3.3
  [76274a88] Bijectors v0.4.0
  [9e28174c] BinDeps v0.8.10
  [b99e7846] BinaryProvider v0.5.8
  [336ed68f] CSV v0.5.18
  [49dc2e85] Calculus v0.5.1
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [3da002f7] ColorTypes v0.8.0
  [5ae59095] Colors v0.9.6
  [861a8166] Combinatorics v1.0.0
  [bbf7d656] CommonSubexpressions v0.2.0
  [34da2185] Compat v2.2.0
  [8f4d0f93] Conda v1.3.0
  [d38c429a] Contour v0.5.1
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [e7dc6d0d] DataValues v0.4.12
  [01453d9d] DiffEqDiffTools v1.5.0
  [163ba53b] DiffResults v0.0.4
  [b552c78f] DiffRules v0.1.0
  [b4f34e82] Distances v0.8.2
  [31c24e10] Distributions v0.21.9
  [ced4e74d] DistributionsAD v0.1.1
  [c87230d0] FFMPEG v0.2.3
  [7a1cc6ca] FFTW v1.0.1
  [48062228] FilePathsBase v0.7.0
  [1a297f60] FillArrays v0.8.2
  [26cc04aa] FiniteDifferences v0.9.0
  [53c48c17] FixedPointNumbers v0.6.1
  [f6369f11] ForwardDiff v0.10.7
  [28b8d3ca] GR v0.44.0
  [4d00f742] GeometryTypes v0.7.6
  [7869d1d1] IRTools v0.3.0
  [505f98c9] InplaceOps v0.3.0
  [a98d9a8b] Interpolations v0.12.5
  [8197267c] IntervalSets v0.3.2
  [41ab1584] InvertedIndices v1.0.0
  [c8e1da08] IterTools v1.3.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [5ab0869b] KernelDensity v0.5.1
  [5078a376] LazyArrays v0.14.10
  [6f1fad26] Libtask v0.3.1
  [d3d80556] LineSearches v7.0.1
  [c7f686f2] MCMCChains v0.3.15
  [1914dd2f] MacroTools v0.5.2
  [dbb5928d] MappedArrays v0.2.2
  [442fdcdd] Measures v0.3.0
  [e1d29d7a] Missings v0.4.3
  [d41bc354] NLSolversBase v7.5.0
  [872c559c] NNlib v0.6.0
  [77ba4419] NaNMath v0.3.3
  [b8a86587] NearestNeighbors v0.4.4
  [510215fc] Observables v0.2.3
  [6fe1bfb0] OffsetArrays v0.11.2
  [429524aa] Optim v0.19.5
  [bac558e1] OrderedCollections v1.1.0
  [90014a1f] PDMats v0.9.10
  [d96e819e] Parameters v0.12.0
  [69de0a69] Parsers v0.3.10
  [ccf2f8ad] PlotThemes v1.0.0
  [995b91a9] PlotUtils v0.6.1
  [91a5bcdd] Plots v0.28.2
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [85a6dd25] PositiveFactorizations v0.2.3
  [92933f4c] ProgressMeter v1.2.0
  [1fd47b50] QuadGK v2.1.1
  [b3c3ace0] RangeArrays v0.3.1
  [c84ed2f1] Ratios v0.3.1
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v0.5.2
  [79098fc4] Rmath v0.6.0
  [f2b01f46] Roots v0.8.3
  [992d4aef] Showoff v0.3.1
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [4c63d2b9] StatsFuns v0.8.0
  [f3b207a7] StatsPlots v0.12.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [a759f4b9] TimerOutputs v0.5.3
  [9f7883ad] Tracker v0.2.5
  [fce5fe82] Turing v0.7.1
  [ead7e11d] TuringModels v1.0.0
  [30578b45] URIParser v0.4.0
  [81def892] VersionParsing v1.1.3
  [ea10d353] WeakRefStrings v0.6.1
  [cc8bc4a8] Widgets v0.6.2
  [efce3f68] WoodburyMatrices v0.4.1
  [e88e6eb3] Zygote v0.4.1
  [700de1a5] ZygoteRules v0.2.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [4607b0f0] SuiteSparse  [`@stdlib/SuiteSparse`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
┌ Warning: `lgamma(x::Real)` is deprecated, use `(logabsgamma(x))[1]` instead.
│   caller = lstirling_asym(::BigFloat) at misc.jl:56
└ @ StatsFuns ~/.julia/packages/StatsFuns/2QE7p/src/misc.jl:56
  Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
 Resolving package versions...
┌ Info: Found initial step size
└   ϵ = 1.6

Sampling   0%|                               |  ETA: 1:15:23[K
  iterations:                    1
  n_steps:                       1
  is_accept:                     true
  acceptance_rate:               3.1654824812316204e-203
  log_density:                   -7.871337080896936
  hamiltonian_energy:            8.058216105234443
  hamiltonian_energy_error:      0.0
  max_hamiltonian_energy_error:  466.27246839108614
  tree_depth:                    1
  numerical_error:               false
  step_size:                     1.6
  nom_step_size:                 1.6
  mass_matrix:                   DiagEuclideanMetric([1.0, 1.0])
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Sampling 100%|███████████████████████████████| Time: 0:00:05[K
  iterations:                    1000
  n_steps:                       3
  is_accept:                     true
  acceptance_rate:               0.2765203891235822
  log_density:                   -4.681642666668928
  hamiltonian_energy:            5.655163551012248
  hamiltonian_energy_error:      0.0
  max_hamiltonian_energy_error:  3.5988397601932265
  tree_depth:                    2
  numerical_error:               false
  step_size:                     0.7094198418047365
  nom_step_size:                 0.7094198418047365
  mass_matrix:                   DiagEuclideanMetric([1.0, 1.0])
2-element Array{ChainDataFrame,1}

Summary Statistics

│ Row │ parameters                   │ mean       │ std         │ naive_se    │ mcse       │ ess     │ r_hat    │
│     │ Symbol                       │ Float64    │ Float64     │ Float64     │ Float64    │ Any     │ Any      │
├─────┼──────────────────────────────┼────────────┼─────────────┼─────────────┼────────────┼─────────┼──────────┤
│ 1   │ hamiltonian_energy_error     │ -0.0256282 │ 0.530097    │ 0.0237067   │ 0.00799665 │ 783.372 │ 0.998264 │
│ 2   │ m                            │ 1.21682    │ 0.746494    │ 0.0333842   │ 0.0782407  │ 286.005 │ 1.00219  │
│ 3   │ max_hamiltonian_energy_error │ 4.39526    │ 24.8891     │ 1.11308     │ 1.52619    │ 532.858 │ 0.998325 │
│ 4   │ nom_step_size                │ 0.70942    │ 4.11194e-15 │ 1.83892e-16 │ 0.0        │ 2.00803 │ 1.09627  │
│ 5   │ s                            │ 1.81451    │ 1.24442     │ 0.0556519   │ 0.100516   │ 273.885 │ 1.00518  │

Quantiles

│ Row │ parameters                   │ 2.5%      │ 25.0%     │ 50.0%    │ 75.0%    │ 97.5%   │
│     │ Symbol                       │ Float64   │ Float64   │ Float64  │ Float64  │ Float64 │
├─────┼──────────────────────────────┼───────────┼───────────┼──────────┼──────────┼─────────┤
│ 1   │ hamiltonian_energy_error     │ -1.20156  │ -0.197736 │ 0.0      │ 0.102828 │ 1.18376 │
│ 2   │ m                            │ -0.378819 │ 0.774382  │ 1.22644  │ 1.68465  │ 2.65012 │
│ 3   │ max_hamiltonian_energy_error │ -1.4078   │ -0.233626 │ 0.264241 │ 1.64812  │ 33.7419 │
│ 4   │ nom_step_size                │ 0.70942   │ 0.70942   │ 0.70942  │ 0.70942  │ 0.70942 │
│ 5   │ s                            │ 0.569697  │ 0.946985  │ 1.40169  │ 2.30509  │ 5.19633 │
Test Summary: |
TuringModels  | No tests
   Testing TuringModels tests passed

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 18 minutes, 4 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed Ratios ────────────────────── v0.3.1
 Installed ColorTypes ────────────────── v0.8.0
 Installed Plots ─────────────────────── v0.28.2
 Installed GeometryTypes ─────────────── v0.7.6
 Installed FiniteDifferences ─────────── v0.9.0
 Installed Colors ────────────────────── v0.9.6
 Installed DataValues ────────────────── v0.4.12
 Installed TuringModels ──────────────── v1.0.0
 Installed Optim ─────────────────────── v0.19.5
 Installed Conda ─────────────────────── v1.3.0
 Installed Adapt ─────────────────────── v1.0.0
 Installed Zygote ────────────────────── v0.4.1
 Installed DataStructures ────────────── v0.17.6
 Installed QuadGK ────────────────────── v2.1.1
 Installed ArrayLayouts ──────────────── v0.1.5
 Installed WeakRefStrings ────────────── v0.6.1
 Installed NaNMath ───────────────────── v0.3.3
 Installed Bijectors ─────────────────── v0.4.0
 Installed SpecialFunctions ──────────── v0.8.0
 Installed Tables ────────────────────── v0.2.11
 Installed Polynomials ───────────────── v0.6.0
 Installed DataFrames ────────────────── v0.19.4
 Installed LazyArrays ────────────────── v0.14.10
 Installed ArgCheck ──────────────────── v1.0.1
 Installed Compat ────────────────────── v2.2.0
 Installed BinDeps ───────────────────── v0.8.10
 Installed StaticArrays ──────────────── v0.12.1
 Installed MappedArrays ──────────────── v0.2.2
 Installed StatsPlots ────────────────── v0.12.0
 Installed FixedPointNumbers ─────────── v0.6.1
 Installed IterTools ─────────────────── v1.3.0
 Installed Roots ─────────────────────── v0.8.3
 Installed MacroTools ────────────────── v0.5.2
 Installed DiffResults ───────────────── v0.0.4
 Installed StatsBase ─────────────────── v0.32.0
 Installed Showoff ───────────────────── v0.3.1
 Installed ForwardDiff ───────────────── v0.10.7
 Installed AxisAlgorithms ────────────── v1.0.0
 Installed OffsetArrays ──────────────── v0.11.2
 Installed LineSearches ──────────────── v7.0.1
 Installed FillArrays ────────────────── v0.8.2
 Installed Libtask ───────────────────── v0.3.1
 Installed Arpack ────────────────────── v0.3.1
 Installed Calculus ──────────────────── v0.5.1
 Installed ZygoteRules ───────────────── v0.2.0
 Installed URIParser ─────────────────── v0.4.0
 Installed Missings ──────────────────── v0.4.3
 Installed AxisArrays ────────────────── v0.3.3
 Installed FFTW ──────────────────────── v1.0.1
 Installed TableTraits ───────────────── v1.0.0
 Installed CommonSubexpressions ──────── v0.2.0
 Installed AdvancedHMC ───────────────── v0.2.14
 Installed PooledArrays ──────────────── v0.5.2
 Installed Widgets ───────────────────── v0.6.2
 Installed BinaryProvider ────────────── v0.5.8
 Installed StatsFuns ─────────────────── v0.8.0
 Installed FilePathsBase ─────────────── v0.7.0
 Installed InplaceOps ────────────────── v0.3.0
 Installed NLSolversBase ─────────────── v7.5.0
 Installed ProgressMeter ─────────────── v1.2.0
 Installed Parameters ────────────────── v0.12.0
 Installed Measures ──────────────────── v0.3.0
 Installed InvertedIndices ───────────── v1.0.0
 Installed Rmath ─────────────────────── v0.6.0
 Installed DiffRules ─────────────────── v0.1.0
 Installed FFMPEG ────────────────────── v0.2.3
 Installed IntervalSets ──────────────── v0.3.2
 Installed NNlib ─────────────────────── v0.6.0
 Installed Requires ──────────────────── v0.5.2
 Installed Interpolations ────────────── v0.12.5
 Installed AbstractFFTs ──────────────── v0.4.1
 Installed Distances ─────────────────── v0.8.2
 Installed ArrayInterface ────────────── v2.0.0
 Installed DataValueInterfaces ───────── v1.0.0
 Installed Combinatorics ─────────────── v1.0.0
 Installed PlotUtils ─────────────────── v0.6.1
 Installed KernelDensity ─────────────── v0.5.1
 Installed PositiveFactorizations ────── v0.2.3
 Installed Distributions ─────────────── v0.21.9
 Installed RangeArrays ───────────────── v0.3.1
 Installed Reexport ──────────────────── v0.2.0
 Installed PlotThemes ────────────────── v1.0.0
 Installed Contour ───────────────────── v0.5.1
 Installed CategoricalArrays ─────────── v0.7.3
 Installed Turing ────────────────────── v0.7.1
 Installed RecipesBase ───────────────── v0.7.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed WoodburyMatrices ──────────── v0.4.1
 Installed Clustering ────────────────── v0.13.3
 Installed Tracker ───────────────────── v0.2.5
 Installed DataAPI ───────────────────── v1.1.0
 Installed IRTools ───────────────────── v0.3.0
 Installed PDMats ────────────────────── v0.9.10
 Installed JSON ──────────────────────── v0.21.0
 Installed NearestNeighbors ──────────── v0.4.4
 Installed OrderedCollections ────────── v1.1.0
 Installed MCMCChains ────────────────── v0.3.15
 Installed Parsers ───────────────────── v0.3.10
 Installed DiffEqDiffTools ───────────── v1.5.0
 Installed CSV ───────────────────────── v0.5.18
 Installed VersionParsing ────────────── v1.1.3
 Installed Observables ───────────────── v0.2.3
 Installed GR ────────────────────────── v0.44.0
 Installed TimerOutputs ──────────────── v0.5.3
 Installed DistributionsAD ───────────── v0.1.1
 Installed SortingAlgorithms ─────────── v0.3.1
  Updating `~/.julia/environments/v1.3/Project.toml`
  [ead7e11d] + TuringModels v1.0.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [621f4979] + AbstractFFTs v0.4.1
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  [dce04be8] + ArgCheck v1.0.1
  [7d9fca2a] + Arpack v0.3.1
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  [49dc2e85] + Calculus v0.5.1
  [324d7699] + CategoricalArrays v0.7.3
  [aaaa29a8] + Clustering v0.13.3
  [3da002f7] + ColorTypes v0.8.0
  [5ae59095] + Colors v0.9.6
  [861a8166] + Combinatorics v1.0.0
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  [34da2185] + Compat v2.2.0
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  [8197267c] + IntervalSets v0.3.2
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  [5078a376] + LazyArrays v0.14.10
  [6f1fad26] + Libtask v0.3.1
  [d3d80556] + LineSearches v7.0.1
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  [e88e6eb3] + Zygote v0.4.1
  [700de1a5] + ZygoteRules v0.2.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
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  Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
  Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
  Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
  Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
  Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
  Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
  Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
  Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
   Testing TuringModels
    Status `/tmp/jl_j3z7us/Manifest.toml`
  [621f4979] AbstractFFTs v0.4.1
  [79e6a3ab] Adapt v1.0.0
  [0bf59076] AdvancedHMC v0.2.14
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  [9f7883ad] Tracker v0.2.5
  [fce5fe82] Turing v0.7.1
  [ead7e11d] TuringModels v1.0.0
  [30578b45] URIParser v0.4.0
  [81def892] VersionParsing v1.1.3
  [ea10d353] WeakRefStrings v0.6.1
  [cc8bc4a8] Widgets v0.6.2
  [efce3f68] WoodburyMatrices v0.4.1
  [e88e6eb3] Zygote v0.4.1
  [700de1a5] ZygoteRules v0.2.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [4607b0f0] SuiteSparse  [`@stdlib/SuiteSparse`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
┌ Warning: `lgamma(x::Real)` is deprecated, use `(logabsgamma(x))[1]` instead.
│   caller = lstirling_asym(::BigFloat) at misc.jl:56
└ @ StatsFuns ~/.julia/packages/StatsFuns/2QE7p/src/misc.jl:56
  Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
 Resolving package versions...
┌ Info: Found initial step size
└   ϵ = 3.2

Sampling   0%|                               |  ETA: 1:16:58[K
  iterations:                    1
  n_steps:                       1
  is_accept:                     true
  acceptance_rate:               0.0
  log_density:                   -7.2753164847793865
  hamiltonian_energy:            8.022153683300695
  hamiltonian_energy_error:      0.0
  max_hamiltonian_energy_error:  5.181905159509677e14
  tree_depth:                    0
  numerical_error:               true
  step_size:                     3.2
  nom_step_size:                 3.2
  mass_matrix:                   DiagEuclideanMetric([1.0, 1.0])
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Sampling 100%|███████████████████████████████| Time: 0:00:05[K
  iterations:                    1000
  n_steps:                       3
  is_accept:                     true
  acceptance_rate:               1.0
  log_density:                   -4.938729000937724
  hamiltonian_energy:            5.042935541951398
  hamiltonian_energy_error:      -0.1336480042770889
  max_hamiltonian_energy_error:  -0.24878190262156874
  tree_depth:                    2
  numerical_error:               false
  step_size:                     0.6865149341236864
  nom_step_size:                 0.6865149341236864
  mass_matrix:                   DiagEuclideanMetric([1.0, 1.0])
2-element Array{ChainDataFrame,1}

Summary Statistics

│ Row │ parameters                   │ mean      │ std         │ naive_se    │ mcse      │ ess     │ r_hat    │
│     │ Symbol                       │ Float64   │ Float64     │ Float64     │ Float64   │ Any     │ Any      │
├─────┼──────────────────────────────┼───────────┼─────────────┼─────────────┼───────────┼─────────┼──────────┤
│ 1   │ hamiltonian_energy_error     │ 0.0212011 │ 0.553288    │ 0.0247438   │ 0.0234271 │ 1509.68 │ 0.998017 │
│ 2   │ m                            │ 1.10142   │ 0.878132    │ 0.0392712   │ 0.0782837 │ 114.043 │ 1.02716  │
│ 3   │ max_hamiltonian_energy_error │ 499.251   │ 11086.6     │ 495.806     │ 495.3     │ 512.439 │ 0.999999 │
│ 4   │ nom_step_size                │ 0.686515  │ 5.22327e-15 │ 2.33592e-16 │ 0.0       │ 2.00803 │ 1.10913  │
│ 5   │ s                            │ 2.2027    │ 1.95382     │ 0.0873777   │ 0.0599475 │ 148.309 │ 0.999365 │

Quantiles

│ Row │ parameters                   │ 2.5%     │ 25.0%     │ 50.0%    │ 75.0%    │ 97.5%    │
│     │ Symbol                       │ Float64  │ Float64   │ Float64  │ Float64  │ Float64  │
├─────┼──────────────────────────────┼──────────┼───────────┼──────────┼──────────┼──────────┤
│ 1   │ hamiltonian_energy_error     │ -1.07497 │ -0.134441 │ 0.0      │ 0.187453 │ 1.36522  │
│ 2   │ m                            │ -1.12765 │ 0.66966   │ 1.17657  │ 1.67706  │ 2.5692   │
│ 3   │ max_hamiltonian_energy_error │ -1.12252 │ -0.171624 │ 0.280583 │ 1.09925  │ 28.0532  │
│ 4   │ nom_step_size                │ 0.686515 │ 0.686515  │ 0.686515 │ 0.686515 │ 0.686515 │
│ 5   │ s                            │ 0.564547 │ 1.05282   │ 1.61289  │ 2.60748  │ 7.53329  │
Test Summary: |
TuringModels  | No tests
   Testing TuringModels tests passed