If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was successful .
Last evaluation was ago and took 10 minutes, 17 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DelayEmbeddings ───────────── v1.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed PDMats ────────────────────── v0.9.10
Installed NearestNeighbors ──────────── v0.4.4
Installed TableTraits ───────────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed TransferEntropy ───────────── v0.4.3
Installed Conda ─────────────────────── v1.3.0
Installed CommonSubexpressions ──────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed Polynomials ───────────────── v0.6.0
Installed URIParser ─────────────────── v0.4.0
Installed SimpleDiffEq ──────────────── v0.6.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed DiffEqBase ────────────────── v6.7.0
Installed ErrorfreeArithmetic ───────── v0.4.0
Installed DocStringExtensions ───────── v0.8.1
Installed StatsFuns ─────────────────── v0.9.0
Installed Requires ──────────────────── v0.5.2
Installed SetRounding ───────────────── v0.2.0
Installed Simplices ─────────────────── v0.4.1
Installed Reexport ──────────────────── v0.2.0
Installed InplaceOps ────────────────── v0.3.0
Installed IntervalArithmetic ────────── v0.16.1
Installed Compat ────────────────────── v2.2.0
Installed PyCall ────────────────────── v1.91.2
Installed OffsetArrays ──────────────── v0.11.2
Installed ForwardDiff ───────────────── v0.10.7
Installed Rmath ─────────────────────── v0.5.1
Installed FunctionWrappers ──────────── v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed DynamicalSystemsBase ──────── v1.3.1
Installed CausalityToolsBase ────────── v0.7.0
Installed RecipesBase ───────────────── v0.7.0
Installed Combinatorics ─────────────── v1.0.0
Installed Roots ─────────────────────── v0.8.3
Installed PerronFrobenius ───────────── v0.6.0
Installed TreeViews ─────────────────── v0.3.0
Installed RecursiveFactorization ────── v0.1.0
Installed DiffRules ─────────────────── v0.1.0
Installed DataStructures ────────────── v0.17.6
Installed Parsers ───────────────────── v0.3.10
Installed IterativeSolvers ──────────── v0.8.1
Installed Distributions ─────────────── v0.21.9
Installed DiffEqDiffTools ───────────── v1.5.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed StaticArrays ──────────────── v0.12.1
Installed JSON ──────────────────────── v0.21.0
Installed ArrayInterface ────────────── v2.0.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed Ratios ────────────────────── v0.3.1
Installed NaNMath ───────────────────── v0.3.3
Installed FastRounding ──────────────── v0.2.0
Installed Parameters ────────────────── v0.12.0
Installed MuladdMacro ───────────────── v0.2.1
Installed DiffResults ───────────────── v0.0.4
Installed Interpolations ────────────── v0.12.5
Installed QuadGK ────────────────────── v2.1.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed VersionParsing ────────────── v1.1.3
Installed ChaosTools ────────────────── v1.6.1
Installed SpecialFunctions ──────────── v0.8.0
Installed Distances ─────────────────── v0.8.2
Installed MacroTools ────────────────── v0.5.2
Installed StateSpaceReconstruction ──── v0.4.2
Installed BinDeps ───────────────────── v0.8.10
Installed Arpack ────────────────────── v0.3.1
Installed CRlibm ────────────────────── v0.7.1
Updating `~/.julia/environments/v1.2/Project.toml`
[ea221983] + TransferEntropy v0.4.3
Updating `~/.julia/environments/v1.2/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[96374032] + CRlibm v0.7.1
[b1f25513] + CausalityToolsBase v0.7.0
[608a59af] + ChaosTools v1.6.1
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[5732040d] + DelayEmbeddings v1.2.0
[2b5f629d] + DiffEqBase v6.7.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[6e36e845] + DynamicalSystemsBase v1.3.1
[90fa49ef] + ErrorfreeArithmetic v0.4.0
[fa42c844] + FastRounding v0.2.0
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[505f98c9] + InplaceOps v0.3.0
[a98d9a8b] + Interpolations v0.12.5
[d1acc4aa] + IntervalArithmetic v0.16.1
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[260eed61] + PerronFrobenius v0.6.0
[f27b6e38] + Polynomials v0.6.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.1.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[f2b01f46] + Roots v0.8.3
[3cc68bcd] + SetRounding v0.2.0
[05bca326] + SimpleDiffEq v0.6.0
[d5428e67] + Simplices v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[1441a9f6] + StateSpaceReconstruction v0.4.2
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[ea221983] + TransferEntropy v0.4.3
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building CRlibm ──────────→ `~/.julia/packages/CRlibm/2S9DB/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing TransferEntropy
Status `/tmp/jl_9qbqv9/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[96374032] CRlibm v0.7.1
[b1f25513] CausalityToolsBase v0.7.0
[608a59af] ChaosTools v1.6.1
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[5732040d] DelayEmbeddings v1.2.0
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[6e36e845] DynamicalSystemsBase v1.3.1
[90fa49ef] ErrorfreeArithmetic v0.4.0
[fa42c844] FastRounding v0.2.0
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[d1acc4aa] IntervalArithmetic v0.16.1
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[260eed61] PerronFrobenius v0.6.0
[f27b6e38] Polynomials v0.6.0
[438e738f] PyCall v1.91.2
[1fd47b50] QuadGK v2.1.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[3cc68bcd] SetRounding v0.2.0
[05bca326] SimpleDiffEq v0.6.0
[d5428e67] Simplices v0.4.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[ea221983] TransferEntropy v0.4.3
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Resolving package versions...
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Resolving package versions...
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /root/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.3.1 | py37h7c811a0_0 14.0 MB
------------------------------------------------------------
Total: 14.0 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.3.1-py37h7c811a0_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: using DelayEmbeddings.AbstractEmbedding in module PerronFrobenius conflicts with an existing identifier.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Test Summary: | Pass Total
Visitation frequency estimator | 15 15
Test Summary: | Pass Total
kNN (Kraskov) estimator | 100 100
Test Summary: | Pass Total
Transfer operator grid estimator | 30 30
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = reshape_simplices(::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at reshape_simplices.jl:38
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/reshape_simplices.jl:38
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:144
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:144
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:145
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:145
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:146
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:146
Testing TransferEntropy tests passed
Results with Julia v1.3.0
Testing was successful .
Last evaluation was ago and took 9 minutes, 42 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed URIParser ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed FastRounding ──────────────── v0.2.0
Installed DiffResults ───────────────── v0.0.4
Installed Arpack ────────────────────── v0.3.1
Installed DataStructures ────────────── v0.17.6
Installed TransferEntropy ───────────── v0.4.3
Installed AxisAlgorithms ────────────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed Roots ─────────────────────── v0.8.3
Installed QuadGK ────────────────────── v2.1.1
Installed FunctionWrappers ──────────── v1.0.0
Installed StaticArrays ──────────────── v0.12.1
Installed DocStringExtensions ───────── v0.8.1
Installed StatsFuns ─────────────────── v0.9.0
Installed Parsers ───────────────────── v0.3.10
Installed NearestNeighbors ──────────── v0.4.4
Installed Combinatorics ─────────────── v1.0.0
Installed MacroTools ────────────────── v0.5.2
Installed Missings ──────────────────── v0.4.3
Installed Simplices ─────────────────── v0.4.1
Installed Distributions ─────────────── v0.21.9
Installed TreeViews ─────────────────── v0.3.0
Installed Rmath ─────────────────────── v0.5.1
Installed Parameters ────────────────── v0.12.0
Installed TableTraits ───────────────── v1.0.0
Installed PyCall ────────────────────── v1.91.2
Installed OrderedCollections ────────── v1.1.0
Installed SpecialFunctions ──────────── v0.8.0
Installed CRlibm ────────────────────── v0.7.1
Installed DynamicalSystemsBase ──────── v1.3.1
Installed DelayEmbeddings ───────────── v1.2.0
Installed CausalityToolsBase ────────── v0.7.0
Installed CommonSubexpressions ──────── v0.2.0
Installed SetRounding ───────────────── v0.2.0
Installed BinDeps ───────────────────── v0.8.10
Installed InplaceOps ────────────────── v0.3.0
Installed JSON ──────────────────────── v0.21.0
Installed Interpolations ────────────── v0.12.5
Installed RecipesBase ───────────────── v0.7.0
Installed DataAPI ───────────────────── v1.1.0
Installed Distances ─────────────────── v0.8.2
Installed ForwardDiff ───────────────── v0.10.7
Installed NaNMath ───────────────────── v0.3.3
Installed PerronFrobenius ───────────── v0.6.0
Installed Polynomials ───────────────── v0.6.0
Installed IntervalArithmetic ────────── v0.16.1
Installed SimpleDiffEq ──────────────── v0.6.0
Installed ErrorfreeArithmetic ───────── v0.4.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffRules ─────────────────── v0.1.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed ArrayInterface ────────────── v2.0.0
Installed Requires ──────────────────── v0.5.2
Installed Conda ─────────────────────── v1.3.0
Installed ChaosTools ────────────────── v1.6.1
Installed DiffEqBase ────────────────── v6.7.0
Installed VersionParsing ────────────── v1.1.3
Installed MuladdMacro ───────────────── v0.2.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PDMats ────────────────────── v0.9.10
Installed RecursiveFactorization ────── v0.1.0
Installed OffsetArrays ──────────────── v0.11.2
Installed WoodburyMatrices ──────────── v0.4.1
Installed StatsBase ─────────────────── v0.32.0
Installed Reexport ──────────────────── v0.2.0
Installed IterativeSolvers ──────────── v0.8.1
Installed StateSpaceReconstruction ──── v0.4.2
Installed BinaryProvider ────────────── v0.5.8
Updating `~/.julia/environments/v1.3/Project.toml`
[ea221983] + TransferEntropy v0.4.3
Updating `~/.julia/environments/v1.3/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[96374032] + CRlibm v0.7.1
[b1f25513] + CausalityToolsBase v0.7.0
[608a59af] + ChaosTools v1.6.1
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[5732040d] + DelayEmbeddings v1.2.0
[2b5f629d] + DiffEqBase v6.7.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[6e36e845] + DynamicalSystemsBase v1.3.1
[90fa49ef] + ErrorfreeArithmetic v0.4.0
[fa42c844] + FastRounding v0.2.0
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[505f98c9] + InplaceOps v0.3.0
[a98d9a8b] + Interpolations v0.12.5
[d1acc4aa] + IntervalArithmetic v0.16.1
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[260eed61] + PerronFrobenius v0.6.0
[f27b6e38] + Polynomials v0.6.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.1.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[f2b01f46] + Roots v0.8.3
[3cc68bcd] + SetRounding v0.2.0
[05bca326] + SimpleDiffEq v0.6.0
[d5428e67] + Simplices v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[1441a9f6] + StateSpaceReconstruction v0.4.2
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[ea221983] + TransferEntropy v0.4.3
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building CRlibm ──────────→ `~/.julia/packages/CRlibm/2S9DB/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing TransferEntropy
Status `/tmp/jl_xQJ8ma/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[96374032] CRlibm v0.7.1
[b1f25513] CausalityToolsBase v0.7.0
[608a59af] ChaosTools v1.6.1
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[5732040d] DelayEmbeddings v1.2.0
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[6e36e845] DynamicalSystemsBase v1.3.1
[90fa49ef] ErrorfreeArithmetic v0.4.0
[fa42c844] FastRounding v0.2.0
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[d1acc4aa] IntervalArithmetic v0.16.1
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[260eed61] PerronFrobenius v0.6.0
[f27b6e38] Polynomials v0.6.0
[438e738f] PyCall v1.91.2
[1fd47b50] QuadGK v2.1.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[3cc68bcd] SetRounding v0.2.0
[05bca326] SimpleDiffEq v0.6.0
[d5428e67] Simplices v0.4.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[ea221983] TransferEntropy v0.4.3
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Resolving package versions...
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Resolving package versions...
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /root/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.3.1 | py37h7c811a0_0 14.0 MB
------------------------------------------------------------
Total: 14.0 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.3.1-py37h7c811a0_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: using DelayEmbeddings.AbstractEmbedding in module PerronFrobenius conflicts with an existing identifier.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Test Summary: | Pass Total
Visitation frequency estimator | 15 15
Test Summary: | Pass Total
kNN (Kraskov) estimator | 100 100
Test Summary: | Pass Total
Transfer operator grid estimator | 30 30
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = reshape_simplices(::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at reshape_simplices.jl:38
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/reshape_simplices.jl:38
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:144
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:144
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:145
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:145
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:146
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:146
Testing TransferEntropy tests passed
Results with Julia v1.3.1-pre-7704df0a5a
Testing was successful .
Last evaluation was ago and took 10 minutes, 6 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed FastRounding ──────────────── v0.2.0
Installed SetRounding ───────────────── v0.2.0
Installed Conda ─────────────────────── v1.3.0
Installed PyCall ────────────────────── v1.91.2
Installed QuadGK ────────────────────── v2.1.1
Installed DataStructures ────────────── v0.17.6
Installed TransferEntropy ───────────── v0.4.3
Installed FunctionWrappers ──────────── v1.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed CausalityToolsBase ────────── v0.7.0
Installed DynamicalSystemsBase ──────── v1.3.1
Installed ErrorfreeArithmetic ───────── v0.4.0
Installed IterativeSolvers ──────────── v0.8.1
Installed SpecialFunctions ──────────── v0.8.0
Installed Polynomials ───────────────── v0.6.0
Installed Compat ────────────────────── v2.2.0
Installed BinDeps ───────────────────── v0.8.10
Installed MacroTools ────────────────── v0.5.2
Installed DiffResults ───────────────── v0.0.4
Installed StaticArrays ──────────────── v0.12.1
Installed Roots ─────────────────────── v0.8.3
Installed StatsBase ─────────────────── v0.32.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed ForwardDiff ───────────────── v0.10.7
Installed CommonSubexpressions ──────── v0.2.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed Missings ──────────────────── v0.4.3
Installed OffsetArrays ──────────────── v0.11.2
Installed StatsFuns ─────────────────── v0.9.0
Installed Arpack ────────────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed MuladdMacro ───────────────── v0.2.1
Installed IntervalArithmetic ────────── v0.16.1
Installed InplaceOps ────────────────── v0.3.0
Installed DocStringExtensions ───────── v0.8.1
Installed Parameters ────────────────── v0.12.0
Installed ChaosTools ────────────────── v1.6.1
Installed Rmath ─────────────────────── v0.5.1
Installed Requires ──────────────────── v0.5.2
Installed Interpolations ────────────── v0.12.5
Installed Distances ─────────────────── v0.8.2
Installed DiffRules ─────────────────── v0.1.0
Installed ArrayInterface ────────────── v2.0.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed SimpleDiffEq ──────────────── v0.6.0
Installed RecursiveFactorization ────── v0.1.0
Installed Reexport ──────────────────── v0.2.0
Installed Combinatorics ─────────────── v1.0.0
Installed Simplices ─────────────────── v0.4.1
Installed Distributions ─────────────── v0.21.9
Installed RecipesBase ───────────────── v0.7.0
Installed DiffEqBase ────────────────── v6.7.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed JSON ──────────────────────── v0.21.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PDMats ────────────────────── v0.9.10
Installed DataAPI ───────────────────── v1.1.0
Installed OrderedCollections ────────── v1.1.0
Installed PerronFrobenius ───────────── v0.6.0
Installed Parsers ───────────────────── v0.3.10
Installed NearestNeighbors ──────────── v0.4.4
Installed DiffEqDiffTools ───────────── v1.5.0
Installed TreeViews ─────────────────── v0.3.0
Installed VersionParsing ────────────── v1.1.3
Installed CRlibm ────────────────────── v0.7.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed DelayEmbeddings ───────────── v1.2.0
Installed StateSpaceReconstruction ──── v0.4.2
Updating `~/.julia/environments/v1.3/Project.toml`
[ea221983] + TransferEntropy v0.4.3
Updating `~/.julia/environments/v1.3/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[96374032] + CRlibm v0.7.1
[b1f25513] + CausalityToolsBase v0.7.0
[608a59af] + ChaosTools v1.6.1
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[5732040d] + DelayEmbeddings v1.2.0
[2b5f629d] + DiffEqBase v6.7.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[6e36e845] + DynamicalSystemsBase v1.3.1
[90fa49ef] + ErrorfreeArithmetic v0.4.0
[fa42c844] + FastRounding v0.2.0
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[505f98c9] + InplaceOps v0.3.0
[a98d9a8b] + Interpolations v0.12.5
[d1acc4aa] + IntervalArithmetic v0.16.1
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[260eed61] + PerronFrobenius v0.6.0
[f27b6e38] + Polynomials v0.6.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.1.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[f2b01f46] + Roots v0.8.3
[3cc68bcd] + SetRounding v0.2.0
[05bca326] + SimpleDiffEq v0.6.0
[d5428e67] + Simplices v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[1441a9f6] + StateSpaceReconstruction v0.4.2
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[ea221983] + TransferEntropy v0.4.3
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building CRlibm ──────────→ `~/.julia/packages/CRlibm/2S9DB/deps/build.log`
Testing TransferEntropy
Status `/tmp/jl_N9GQum/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[96374032] CRlibm v0.7.1
[b1f25513] CausalityToolsBase v0.7.0
[608a59af] ChaosTools v1.6.1
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[5732040d] DelayEmbeddings v1.2.0
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[6e36e845] DynamicalSystemsBase v1.3.1
[90fa49ef] ErrorfreeArithmetic v0.4.0
[fa42c844] FastRounding v0.2.0
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[d1acc4aa] IntervalArithmetic v0.16.1
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[260eed61] PerronFrobenius v0.6.0
[f27b6e38] Polynomials v0.6.0
[438e738f] PyCall v1.91.2
[1fd47b50] QuadGK v2.1.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[3cc68bcd] SetRounding v0.2.0
[05bca326] SimpleDiffEq v0.6.0
[d5428e67] Simplices v0.4.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[ea221983] TransferEntropy v0.4.3
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Resolving package versions...
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Resolving package versions...
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /root/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.3.1 | py37h7c811a0_0 14.0 MB
------------------------------------------------------------
Total: 14.0 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.3.1-py37h7c811a0_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: using DelayEmbeddings.AbstractEmbedding in module PerronFrobenius conflicts with an existing identifier.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /root/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Test Summary: | Pass Total
Visitation frequency estimator | 15 15
Test Summary: | Pass Total
kNN (Kraskov) estimator | 100 100
Test Summary: | Pass Total
Transfer operator grid estimator | 30 30
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = reshape_simplices(::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at reshape_simplices.jl:38
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/reshape_simplices.jl:38
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:144
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:144
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:145
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:145
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = #transferoperator_triangulation_approx#21(::Int64, ::Bool, ::typeof(transferoperator_triangulation_approx), ::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at transferoperator_triangulation_approximate.jl:146
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:146
Testing TransferEntropy tests passed