If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 7 minutes, 52 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed Showoff ───────────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed LineSearches ──────────────── v7.0.1
Installed CSV ───────────────────────── v0.5.18
Installed DataFrames ────────────────── v0.19.4
Installed StanSample ────────────────── v1.0.1
Installed PDMats ────────────────────── v0.9.10
Installed AbstractFFTs ──────────────── v0.5.0
Installed BinaryProvider ────────────── v0.5.8
Installed CommonSubexpressions ──────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed StanBase ──────────────────── v1.0.2
Installed Conda ─────────────────────── v1.3.0
Installed RangeArrays ───────────────── v0.3.1
Installed DocStringExtensions ───────── v0.8.1
Installed ArrayLayouts ──────────────── v0.1.5
Installed URIParser ─────────────────── v0.4.0
Installed ElasticArrays ─────────────── v1.0.0
Installed StatsFuns ─────────────────── v0.9.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed StanSamples ───────────────── v0.1.0
Installed InvertedIndices ───────────── v1.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed Reexport ──────────────────── v0.2.0
Installed PooledArrays ──────────────── v0.5.2
Installed ForwardDiff ───────────────── v0.10.7
Installed Compat ────────────────────── v2.2.0
Installed OffsetArrays ──────────────── v0.11.2
Installed Rmath ─────────────────────── v0.5.1
Installed Tables ────────────────────── v0.2.11
Installed OrderedCollections ────────── v1.1.0
Installed FilePathsBase ─────────────── v0.7.0
Installed Calculus ──────────────────── v0.5.1
Installed IterTools ─────────────────── v1.3.0
Installed RecipesBase ───────────────── v0.7.0
Installed KernelDensity ─────────────── v0.5.1
Installed WeakRefStrings ────────────── v0.6.1
Installed DataStructures ────────────── v0.17.6
Installed FillArrays ────────────────── v0.8.2
Installed ArgCheck ──────────────────── v1.0.1
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Parsers ───────────────────── v0.3.10
Installed DiffRules ─────────────────── v0.1.0
Installed Distributions ─────────────── v0.21.9
Installed JSON ──────────────────────── v0.21.0
Installed NamedTupleTools ───────────── v0.12.0
Installed StanDump ──────────────────── v0.2.0
Installed ArrayInterface ────────────── v2.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed Ratios ────────────────────── v0.3.1
Installed StaticArrays ──────────────── v0.12.1
Installed Parameters ────────────────── v0.12.0
Installed DiffResults ───────────────── v0.0.4
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed MCMCChains ────────────────── v0.3.15
Installed IntervalSets ──────────────── v0.3.2
Installed FFTW ──────────────────────── v1.1.0
Installed CategoricalArrays ─────────── v0.7.3
Installed Interpolations ────────────── v0.12.5
Installed QuadGK ────────────────────── v2.1.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed VersionParsing ────────────── v1.1.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed PositiveFactorizations ────── v0.2.3
Installed MacroTools ────────────────── v0.5.2
Installed StanRun ───────────────────── v0.2.1
Installed LazyArrays ────────────────── v0.14.10
Installed SpecialFunctions ──────────── v0.8.0
Installed AxisArrays ────────────────── v0.3.3
Installed BinDeps ───────────────────── v0.8.10
Installed Optim ─────────────────────── v0.19.5
Installed Arpack ────────────────────── v0.3.1
Updating `~/.julia/environments/v1.2/Project.toml`
[c1514b29] + StanSample v1.0.1
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[fdbdab4c] + ElasticArrays v1.0.0
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[f6369f11] + ForwardDiff v0.10.7
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v0.3.15
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[d9ec5142] + NamedTupleTools v0.12.0
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[d0ee94f6] + StanBase v1.0.2
[9713c8f3] + StanDump v0.2.0
[d49c3b98] + StanRun v0.2.1
[c1514b29] + StanSample v1.0.1
[52d0d7a9] + StanSamples v0.1.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing StanSample
Resolving package versions...
Status `/tmp/jl_PCtlDb/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[fdbdab4c] ElasticArrays v1.0.0
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[f6369f11] ForwardDiff v0.10.7
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[c7f686f2] MCMCChains v0.3.15
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[d9ec5142] NamedTupleTools v0.12.0
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[d0ee94f6] StanBase v1.0.2
[9713c8f3] StanDump v0.2.0
[d49c3b98] StanRun v0.2.1
[c1514b29] StanSample v1.0.1
[52d0d7a9] StanSamples v0.1.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/zZgFS/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/zZgFS/src/StanBase.jl:58
Testing: original_stanrun_test/test_stanrun.jl.
StanRun cmdstan run and results: Error During Test at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:3
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel(::String) at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82
[7] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:11
[8] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[9] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:5
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/runtests.jl:13
[15] include at ./boot.jl:328 [inlined]
[16] include_relative(::Module, ::String) at ./loading.jl:1094
[17] include(::Module, ::String) at ./Base.jl:31
[18] include(::String) at ./client.jl:431
[19] top-level scope at none:5
[20] eval(::Module, ::Any) at ./boot.jl:330
[21] exec_options(::Base.JLOptions) at ./client.jl:271
[22] _start() at ./client.jl:464
Test Summary: | Error Total
StanRun cmdstan run and results | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:3
in expression starting at /root/.julia/packages/StanSample/h8XeW/test/runtests.jl:11
ERROR: Package StanSample errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 9 minutes, 53 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed KernelDensity ─────────────── v0.5.1
Installed Ratios ────────────────────── v0.3.1
Installed URIParser ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed StanDump ──────────────────── v0.2.0
Installed DiffResults ───────────────── v0.0.4
Installed Arpack ────────────────────── v0.3.1
Installed StanSample ────────────────── v1.0.1
Installed DataStructures ────────────── v0.17.6
Installed LazyArrays ────────────────── v0.14.10
Installed LineSearches ──────────────── v7.0.1
Installed DocStringExtensions ───────── v0.8.1
Installed AxisAlgorithms ────────────── v1.0.0
Installed FFTW ──────────────────────── v1.1.0
Installed StaticArrays ──────────────── v0.12.1
Installed Compat ────────────────────── v2.2.0
Installed StatsFuns ─────────────────── v0.9.0
Installed QuadGK ────────────────────── v2.1.1
Installed BinaryProvider ────────────── v0.5.8
Installed CategoricalArrays ─────────── v0.7.3
Installed MCMCChains ────────────────── v0.3.15
Installed InvertedIndices ───────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed NamedTupleTools ───────────── v0.12.0
Installed NLSolversBase ─────────────── v7.5.0
Installed IterTools ─────────────────── v1.3.0
Installed Missings ──────────────────── v0.4.3
Installed Distributions ─────────────── v0.21.9
Installed MacroTools ────────────────── v0.5.2
Installed CSV ───────────────────────── v0.5.18
Installed Rmath ─────────────────────── v0.5.1
Installed RangeArrays ───────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed PositiveFactorizations ────── v0.2.3
Installed Parameters ────────────────── v0.12.0
Installed IntervalSets ──────────────── v0.3.2
Installed OrderedCollections ────────── v1.1.0
Installed SpecialFunctions ──────────── v0.8.0
Installed ArgCheck ──────────────────── v1.0.1
Installed ArrayLayouts ──────────────── v0.1.5
Installed JSON ──────────────────────── v0.21.0
Installed CommonSubexpressions ──────── v0.2.0
Installed Showoff ───────────────────── v0.3.1
Installed DataAPI ───────────────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed RecipesBase ───────────────── v0.7.0
Installed NaNMath ───────────────────── v0.3.3
Installed StanSamples ───────────────── v0.1.0
Installed BinDeps ───────────────────── v0.8.10
Installed ForwardDiff ───────────────── v0.10.7
Installed DataValueInterfaces ───────── v1.0.0
Installed Interpolations ────────────── v0.12.5
Installed Optim ─────────────────────── v0.19.5
Installed DiffEqDiffTools ───────────── v1.5.0
Installed ArrayInterface ────────────── v2.0.0
Installed ElasticArrays ─────────────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed DiffRules ─────────────────── v0.1.0
Installed Calculus ──────────────────── v0.5.1
Installed Conda ─────────────────────── v1.3.0
Installed VersionParsing ────────────── v1.1.3
Installed StanRun ───────────────────── v0.2.1
Installed FilePathsBase ─────────────── v0.7.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed WeakRefStrings ────────────── v0.6.1
Installed OffsetArrays ──────────────── v0.11.2
Installed FillArrays ────────────────── v0.8.2
Installed DataFrames ────────────────── v0.19.4
Installed PDMats ────────────────────── v0.9.10
Installed StanBase ──────────────────── v1.0.2
Installed WoodburyMatrices ──────────── v0.4.1
Installed StatsBase ─────────────────── v0.32.0
Installed Reexport ──────────────────── v0.2.0
Installed AxisArrays ────────────────── v0.3.3
Installed AbstractFFTs ──────────────── v0.5.0
Updating `~/.julia/environments/v1.3/Project.toml`
[c1514b29] + StanSample v1.0.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[fdbdab4c] + ElasticArrays v1.0.0
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[f6369f11] + ForwardDiff v0.10.7
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v0.3.15
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[d9ec5142] + NamedTupleTools v0.12.0
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[d0ee94f6] + StanBase v1.0.2
[9713c8f3] + StanDump v0.2.0
[d49c3b98] + StanRun v0.2.1
[c1514b29] + StanSample v1.0.1
[52d0d7a9] + StanSamples v0.1.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing StanSample
Resolving package versions...
Status `/tmp/jl_FZ4ljj/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[fdbdab4c] ElasticArrays v1.0.0
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[f6369f11] ForwardDiff v0.10.7
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[c7f686f2] MCMCChains v0.3.15
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[d9ec5142] NamedTupleTools v0.12.0
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[d0ee94f6] StanBase v1.0.2
[9713c8f3] StanDump v0.2.0
[d49c3b98] StanRun v0.2.1
[c1514b29] StanSample v1.0.1
[52d0d7a9] StanSamples v0.1.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/zZgFS/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/zZgFS/src/StanBase.jl:58
Testing: original_stanrun_test/test_stanrun.jl.
StanRun cmdstan run and results: Error During Test at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:3
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel(::String) at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82
[7] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:11
[8] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[9] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:5
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/runtests.jl:13
[15] include at ./boot.jl:328 [inlined]
[16] include_relative(::Module, ::String) at ./loading.jl:1105
[17] include(::Module, ::String) at ./Base.jl:31
[18] include(::String) at ./client.jl:424
[19] top-level scope at none:6
[20] eval(::Module, ::Any) at ./boot.jl:330
[21] exec_options(::Base.JLOptions) at ./client.jl:263
[22] _start() at ./client.jl:460
Test Summary: | Error Total
StanRun cmdstan run and results | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:3
in expression starting at /root/.julia/packages/StanSample/h8XeW/test/runtests.jl:11
ERROR: Package StanSample errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 7 minutes, 24 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed WeakRefStrings ────────────── v0.6.1
Installed ArrayLayouts ──────────────── v0.1.5
Installed Conda ─────────────────────── v1.3.0
Installed QuadGK ────────────────────── v2.1.1
Installed DataStructures ────────────── v0.17.6
Installed StanSample ────────────────── v1.0.1
Installed Optim ─────────────────────── v0.19.5
Installed Tables ────────────────────── v0.2.11
Installed NaNMath ───────────────────── v0.3.3
Installed ArgCheck ──────────────────── v1.0.1
Installed StaticArrays ──────────────── v0.12.1
Installed LazyArrays ────────────────── v0.14.10
Installed Compat ────────────────────── v2.2.0
Installed DataFrames ────────────────── v0.19.4
Installed BinDeps ───────────────────── v0.8.10
Installed SpecialFunctions ──────────── v0.8.0
Installed DiffResults ───────────────── v0.0.4
Installed IterTools ─────────────────── v1.3.0
Installed StatsBase ─────────────────── v0.32.0
Installed MacroTools ────────────────── v0.5.2
Installed StanRun ───────────────────── v0.2.1
Installed Showoff ───────────────────── v0.3.1
Installed FillArrays ────────────────── v0.8.2
Installed ElasticArrays ─────────────── v1.0.0
Installed OffsetArrays ──────────────── v0.11.2
Installed ForwardDiff ───────────────── v0.10.7
Installed Arpack ────────────────────── v0.3.1
Installed StanBase ──────────────────── v1.0.2
Installed Calculus ──────────────────── v0.5.1
Installed AxisAlgorithms ────────────── v1.0.0
Installed LineSearches ──────────────── v7.0.1
Installed Missings ──────────────────── v0.4.3
Installed URIParser ─────────────────── v0.4.0
Installed FFTW ──────────────────────── v1.1.0
Installed AxisArrays ────────────────── v0.3.3
Installed TableTraits ───────────────── v1.0.0
Installed CommonSubexpressions ──────── v0.2.0
Installed PooledArrays ──────────────── v0.5.2
Installed StanSamples ───────────────── v0.1.0
Installed StanDump ──────────────────── v0.2.0
Installed StatsFuns ─────────────────── v0.9.0
Installed DocStringExtensions ───────── v0.8.1
Installed BinaryProvider ────────────── v0.5.8
Installed Rmath ─────────────────────── v0.5.1
Installed FilePathsBase ─────────────── v0.7.0
Installed Parameters ────────────────── v0.12.0
Installed InvertedIndices ───────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Interpolations ────────────── v0.12.5
Installed DiffRules ─────────────────── v0.1.0
Installed IntervalSets ──────────────── v0.3.2
Installed Requires ──────────────────── v0.5.2
Installed AbstractFFTs ──────────────── v0.5.0
Installed ArrayInterface ────────────── v2.0.0
Installed NamedTupleTools ───────────── v0.12.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Distributions ─────────────── v0.21.9
Installed KernelDensity ─────────────── v0.5.1
Installed PositiveFactorizations ────── v0.2.3
Installed Reexport ──────────────────── v0.2.0
Installed RangeArrays ───────────────── v0.3.1
Installed RecipesBase ───────────────── v0.7.0
Installed CategoricalArrays ─────────── v0.7.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed CSV ───────────────────────── v0.5.18
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed DataAPI ───────────────────── v1.1.0
Installed PDMats ────────────────────── v0.9.10
Installed MCMCChains ────────────────── v0.3.15
Installed Parsers ───────────────────── v0.3.10
Installed DiffEqDiffTools ───────────── v1.5.0
Installed OrderedCollections ────────── v1.1.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed VersionParsing ────────────── v1.1.3
Updating `~/.julia/environments/v1.3/Project.toml`
[c1514b29] + StanSample v1.0.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[fdbdab4c] + ElasticArrays v1.0.0
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[f6369f11] + ForwardDiff v0.10.7
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v0.3.15
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[d9ec5142] + NamedTupleTools v0.12.0
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[d0ee94f6] + StanBase v1.0.2
[9713c8f3] + StanDump v0.2.0
[d49c3b98] + StanRun v0.2.1
[c1514b29] + StanSample v1.0.1
[52d0d7a9] + StanSamples v0.1.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing StanSample
Resolving package versions...
Status `/tmp/jl_BTqLbs/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[fdbdab4c] ElasticArrays v1.0.0
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[f6369f11] ForwardDiff v0.10.7
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[c7f686f2] MCMCChains v0.3.15
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[d9ec5142] NamedTupleTools v0.12.0
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[d0ee94f6] StanBase v1.0.2
[9713c8f3] StanDump v0.2.0
[d49c3b98] StanRun v0.2.1
[c1514b29] StanSample v1.0.1
[52d0d7a9] StanSamples v0.1.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/zZgFS/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/zZgFS/src/StanBase.jl:58
Testing: original_stanrun_test/test_stanrun.jl.
StanRun cmdstan run and results: Error During Test at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:3
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel(::String) at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82
[7] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:11
[8] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[9] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:5
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/StanSample/h8XeW/test/runtests.jl:13
[15] include at ./boot.jl:328 [inlined]
[16] include_relative(::Module, ::String) at ./loading.jl:1105
[17] include(::Module, ::String) at ./Base.jl:31
[18] include(::String) at ./client.jl:424
[19] top-level scope at none:6
[20] eval(::Module, ::Any) at ./boot.jl:330
[21] exec_options(::Base.JLOptions) at ./client.jl:263
[22] _start() at ./client.jl:460
Test Summary: | Error Total
StanRun cmdstan run and results | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/StanSample/h8XeW/test/original_stanrun_test/test_stanrun.jl:3
in expression starting at /root/.julia/packages/StanSample/h8XeW/test/runtests.jl:11
ERROR: Package StanSample errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10