If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 11 minutes, 4 seconds.
Click here to download the log file.
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Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed Showoff ───────────────────── v0.3.1
Installed NearestNeighbors ──────────── v0.4.4
Installed TableTraits ───────────────── v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed DataFrames ────────────────── v0.19.4
Installed Stan ──────────────────────── v5.0.1
Installed PDMats ────────────────────── v0.9.10
Installed Contour ───────────────────── v0.5.1
Installed AbstractFFTs ──────────────── v0.5.0
Installed LineSearches ──────────────── v7.0.1
Installed CommonSubexpressions ──────── v0.2.0
Installed BinaryProvider ────────────── v0.5.8
Installed StatsBase ─────────────────── v0.32.0
Installed Colors ────────────────────── v0.9.6
Installed RangeArrays ───────────────── v0.3.1
Installed Conda ─────────────────────── v1.3.0
Installed Plots ─────────────────────── v0.28.2
Installed Measures ──────────────────── v0.3.0
Installed StanDiagnose ──────────────── v1.0.0
Installed StanBase ──────────────────── v1.0.0
Installed ElasticArrays ─────────────── v1.0.0
Installed StatsFuns ─────────────────── v0.9.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed DataValueInterfaces ───────── v1.0.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed DocStringExtensions ───────── v0.8.1
Installed NLSolversBase ─────────────── v7.5.0
Installed StanSamples ───────────────── v0.1.0
Installed Requires ──────────────────── v0.5.2
Installed PooledArrays ──────────────── v0.5.2
Installed Reexport ──────────────────── v0.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed OffsetArrays ──────────────── v0.11.2
Installed Compat ────────────────────── v2.2.0
Installed Widgets ───────────────────── v0.6.2
Installed Rmath ─────────────────────── v0.5.1
Installed ForwardDiff ───────────────── v0.10.7
Installed OrderedCollections ────────── v1.1.0
Installed Observables ───────────────── v0.2.3
Installed Tables ────────────────────── v0.2.11
Installed IterTools ─────────────────── v1.3.0
Installed Calculus ──────────────────── v0.5.1
Installed FilePathsBase ─────────────── v0.7.0
Installed RecipesBase ───────────────── v0.7.0
Installed KernelDensity ─────────────── v0.5.1
Installed WeakRefStrings ────────────── v0.6.1
Installed StanOptimize ──────────────── v1.0.0
Installed DataStructures ────────────── v0.17.6
Installed ArgCheck ──────────────────── v1.0.1
Installed Parsers ───────────────────── v0.3.10
Installed FixedPointNumbers ─────────── v0.6.1
Installed Distributions ─────────────── v0.21.9
Installed FillArrays ────────────────── v0.8.2
Installed DiffRules ─────────────────── v0.1.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed JSON ──────────────────────── v0.21.0
Installed StatsPlots ────────────────── v0.12.0
Installed NamedTupleTools ───────────── v0.12.0
Installed FFMPEG ────────────────────── v0.2.3
Installed ArrayInterface ────────────── v2.0.0
Installed Ratios ────────────────────── v0.3.1
Installed StaticArrays ──────────────── v0.12.1
Installed DiffResults ───────────────── v0.0.4
Installed StanDump ──────────────────── v0.2.0
Installed NaNMath ───────────────────── v0.3.3
Installed FFTW ──────────────────────── v1.1.0
Installed MCMCChains ────────────────── v0.4.0
Installed Interpolations ────────────── v0.12.5
Installed Documenter ────────────────── v0.24.2
Installed GeometryTypes ─────────────── v0.7.6
Installed CategoricalArrays ─────────── v0.7.3
Installed IntervalSets ──────────────── v0.3.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed DataValues ────────────────── v0.4.12
Installed WoodburyMatrices ──────────── v0.4.1
Installed StanVariational ───────────── v1.0.0
Installed PlotUtils ─────────────────── v0.6.1
Installed QuadGK ────────────────────── v2.1.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed Clustering ────────────────── v0.13.3
Installed AbstractMCMC ──────────────── v0.1.0
Installed LazyArrays ────────────────── v0.14.10
Installed VersionParsing ────────────── v1.1.3
Installed MacroTools ────────────────── v0.5.2
Installed Distances ─────────────────── v0.8.2
Installed StanSample ────────────────── v1.0.0
Installed StanRun ───────────────────── v0.2.1
Installed ColorTypes ────────────────── v0.8.0
Installed SpecialFunctions ──────────── v0.8.0
Installed PositiveFactorizations ────── v0.2.3
Installed GR ────────────────────────── v0.44.0
Installed PlotThemes ────────────────── v1.0.0
Installed AxisArrays ────────────────── v0.3.3
Installed BinDeps ───────────────────── v0.8.10
Installed Optim ─────────────────────── v0.19.5
Installed ProgressMeter ─────────────── v1.2.0
Installed Arpack ────────────────────── v0.3.1
Updating `~/.julia/environments/v1.2/Project.toml`
[682df890] + Stan v5.0.1
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v0.1.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.2
[fdbdab4c] + ElasticArrays v1.0.0
[c87230d0] + FFMPEG v0.2.3
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.6
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v0.4.0
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[d9ec5142] + NamedTupleTools v0.12.0
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[682df890] + Stan v5.0.1
[d0ee94f6] + StanBase v1.0.0
[fb13fc95] + StanDiagnose v1.0.0
[9713c8f3] + StanDump v0.2.0
[fbd8da12] + StanOptimize v1.0.0
[d49c3b98] + StanRun v0.2.1
[c1514b29] + StanSample v1.0.0
[52d0d7a9] + StanSamples v0.1.0
[6ede68ce] + StanVariational v1.0.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[f3b207a7] + StatsPlots v0.12.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing Stan
Resolving package versions...
Status `/tmp/jl_i5Asbq/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[80f14c24] AbstractMCMC v0.1.0
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.2
[fdbdab4c] ElasticArrays v1.0.0
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[28b8d3ca] GR v0.44.0
[4d00f742] GeometryTypes v0.7.6
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[c7f686f2] MCMCChains v0.4.0
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[d9ec5142] NamedTupleTools v0.12.0
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[682df890] Stan v5.0.1
[d0ee94f6] StanBase v1.0.0
[fb13fc95] StanDiagnose v1.0.0
[9713c8f3] StanDump v0.2.0
[fbd8da12] StanOptimize v1.0.0
[d49c3b98] StanRun v0.2.1
[c1514b29] StanSample v1.0.0
[52d0d7a9] StanSamples v0.1.0
[6ede68ce] StanVariational v1.0.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.12.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_h6EenB/kid.stan updated.
Examples/ARM/Ch03/Kid/kidscore.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
/tmp/jl_fHxNqy/bernoulli.stan updated.
Examples/Bernoulli/bernoulli.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] (::getfield(Core, Symbol("#kw#Type")))(::NamedTuple{(:method,),Tuple{StanSample.Sample}}, ::Type{SampleModel}, ::String, ::String) at ./none:0
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Bernoulli/bernoulli.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Bernoulli/bernoulli.jl:21
/tmp/jl_BtuTtw/binomial.stan updated.
Examples/Binomial/binomial.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Binomial/binomial.jl:30
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Binomial/binomial.jl:30
/tmp/jl_tCx3Pu/binormal.stan updated.
Examples/Binormal/binormal.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Binormal/binormal.jl:25
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Binormal/binormal.jl:25
/tmp/jl_v0zoqM/dyes.stan updated.
Examples/Dyes/dyes.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Dyes/dyes.jl:58
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Dyes/dyes.jl:58
/tmp/jl_JHdiKj/schools8.stan updated.
Examples/EightSchools/schools8.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/EightSchools/schools8.jl:33
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/EightSchools/schools8.jl:33
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_38gucp/diagnose.stan updated.
Examples_Stan_Methods/Diagnose/diagnose.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #DiagnoseModel#3(::StanDiagnose.Diagnose, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{DiagnoseModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanDiagnose/p8dbw/src/stanmodel/DiagnoseModel.jl:52
[8] (::getfield(Core, Symbol("#kw#Type")))(::NamedTuple{(:method,),Tuple{StanDiagnose.Diagnose}}, ::Type{DiagnoseModel}, ::String, ::String) at ./none:0
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
/tmp/jl_5Aqk5u/generate_quantities.stan updated.
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_HQLUje/optimize_1.stan updated.
Examples_Stan_Methods/Optimize/optimize.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #OptimizeModel#7(::StanOptimize.Optimize, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{OptimizeModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanOptimize/mdsrE/src/stanmodel/OptimizeModel.jl:52
[8] OptimizeModel(::String, ::String) at /root/.julia/packages/StanOptimize/mdsrE/src/stanmodel/OptimizeModel.jl:49
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Optimize/optimize.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Optimize/optimize.jl:21
/tmp/jl_fNhUSX/parse_and_interpolate.stan updated.
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_dvr9pq/variational.stan updated.
Examples_Stan_Methods/Variational/variational.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #VariationalModel#2(::StanVariational.Variational, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{VariationalModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanVariational/MMldI/src/stanmodel/VariationalModel.jl:52
[8] VariationalModel(::String, ::String) at /root/.julia/packages/StanVariational/MMldI/src/stanmodel/VariationalModel.jl:49
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Variational/variational.jl:24
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Variational/variational.jl:24
/tmp/jl_lZYEiT/diagnostics.stan updated.
Examples_Test_Cases/Diagnostics/diagnostics.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
/tmp/jl_Jgi6Vn/init_dict.stan updated.
Examples_Test_Cases/InitThetaDict/init_dict.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] (::getfield(Core, Symbol("#kw#Type")))(::NamedTuple{(:seed,),Tuple{StanBase.RandomSeed}}, ::Type{SampleModel}, ::String, ::String) at ./none:0
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
/tmp/jl_pFYN9S/init_dict_array.stan updated.
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] (::getfield(Core, Symbol("#kw#Type")))(::NamedTuple{(:seed,),Tuple{StanBase.RandomSeed}}, ::Type{SampleModel}, ::String, ::String) at ./none:0
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
/tmp/jl_pwC3Ho/init_file.stan updated.
Examples_Test_Cases/InitThetaFile/init_file.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
/tmp/jl_PruQyU/namedarray.stan updated.
Examples_Test_Cases/NamedArray/namedarray.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
/tmp/jl_JCUWIq/scalar.stan updated.
Examples_Test_Cases/ScalarObs/scalar.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
/tmp/jl_1o1Gi8/zerolengtharray.stan updated.
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::getfield(StanRun, Symbol("##1#2")))() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::getfield(Base, Symbol("##461#462")){getfield(StanRun, Symbol("##1#2"))})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] Type at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel(::String, ::String) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
Test Summary: | Error Total
Stan.jl v6.0 | 18 18
Examples/ARM/Ch03/Kid/kidscore.jl | 1 1
Examples/Bernoulli/bernoulli.jl | 1 1
Examples/Binomial/binomial.jl | 1 1
Examples/Binormal/binormal.jl | 1 1
Examples/Dyes/dyes.jl | 1 1
Examples/EightSchools/schools8.jl | 1 1
Examples_Stan_Methods/Diagnose/diagnose.jl | 1 1
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl | 1 1
Examples_Stan_Methods/Optimize/optimize.jl | 1 1
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl | 1 1
Examples_Stan_Methods/Variational/variational.jl | 1 1
Examples_Test_Cases/Diagnostics/diagnostics.jl | 1 1
Examples_Test_Cases/InitThetaDict/init_dict.jl | 1 1
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl | 1 1
Examples_Test_Cases/InitThetaFile/init_file.jl | 1 1
Examples_Test_Cases/NamedArray/namedarray.jl | 1 1
Examples_Test_Cases/ScalarObs/scalar.jl | 1 1
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 18 errored, 0 broken.
in expression starting at /root/.julia/packages/Stan/80aQT/test/runtests.jl:30
ERROR: Package Stan errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 19 minutes, 15 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed PlotThemes ────────────────── v1.0.0
Installed KernelDensity ─────────────── v0.5.1
Installed Ratios ────────────────────── v0.3.1
Installed URIParser ─────────────────── v0.4.0
Installed StanDump ──────────────────── v0.2.0
Installed DiffResults ───────────────── v0.0.4
Installed Arpack ────────────────────── v0.3.1
Installed Stan ──────────────────────── v5.0.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed LazyArrays ────────────────── v0.14.10
Installed StaticArrays ──────────────── v0.12.1
Installed DataStructures ────────────── v0.17.6
Installed AxisAlgorithms ────────────── v1.0.0
Installed StatsPlots ────────────────── v0.12.0
Installed LineSearches ──────────────── v7.0.1
Installed FFTW ──────────────────────── v1.1.0
Installed DocStringExtensions ───────── v0.8.1
Installed CategoricalArrays ─────────── v0.7.3
Installed StatsFuns ─────────────────── v0.9.0
Installed Compat ────────────────────── v2.2.0
Installed QuadGK ────────────────────── v2.1.1
Installed StanVariational ───────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed InvertedIndices ───────────── v1.0.0
Installed MCMCChains ────────────────── v0.4.0
Installed ProgressMeter ─────────────── v1.2.0
Installed NLSolversBase ─────────────── v7.5.0
Installed NamedTupleTools ───────────── v0.12.0
Installed CSV ───────────────────────── v0.5.18
Installed IterTools ─────────────────── v1.3.0
Installed Parsers ───────────────────── v0.3.10
Installed NearestNeighbors ──────────── v0.4.4
Installed Missings ──────────────────── v0.4.3
Installed Rmath ─────────────────────── v0.5.1
Installed MacroTools ────────────────── v0.5.2
Installed Distributions ─────────────── v0.21.9
Installed TableTraits ───────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed RangeArrays ───────────────── v0.3.1
Installed PositiveFactorizations ────── v0.2.3
Installed Plots ─────────────────────── v0.28.2
Installed SpecialFunctions ──────────── v0.8.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed Observables ───────────────── v0.2.3
Installed OrderedCollections ────────── v1.1.0
Installed IntervalSets ──────────────── v0.3.2
Installed AbstractMCMC ──────────────── v0.1.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed ArgCheck ──────────────────── v1.0.1
Installed CommonSubexpressions ──────── v0.2.0
Installed Showoff ───────────────────── v0.3.1
Installed BinDeps ───────────────────── v0.8.10
Installed JSON ──────────────────────── v0.21.0
Installed PlotUtils ─────────────────── v0.6.1
Installed ColorTypes ────────────────── v0.8.0
Installed DataAPI ───────────────────── v1.1.0
Installed Distances ─────────────────── v0.8.2
Installed RecipesBase ───────────────── v0.7.0
Installed Tables ────────────────────── v0.2.11
Installed ForwardDiff ───────────────── v0.10.7
Installed Interpolations ────────────── v0.12.5
Installed NaNMath ───────────────────── v0.3.3
Installed StanSamples ───────────────── v0.1.0
Installed Optim ─────────────────────── v0.19.5
Installed DataValues ────────────────── v0.4.12
Installed DataValueInterfaces ───────── v1.0.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffRules ─────────────────── v0.1.0
Installed Calculus ──────────────────── v0.5.1
Installed Documenter ────────────────── v0.24.2
Installed Colors ────────────────────── v0.9.6
Installed ArrayInterface ────────────── v2.0.0
Installed Conda ─────────────────────── v1.3.0
Installed StanDiagnose ──────────────── v1.0.0
Installed VersionParsing ────────────── v1.1.3
Installed Measures ──────────────────── v0.3.0
Installed ElasticArrays ─────────────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed StanRun ───────────────────── v0.2.1
Installed FilePathsBase ─────────────── v0.7.0
Installed Widgets ───────────────────── v0.6.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Contour ───────────────────── v0.5.1
Installed StanSample ────────────────── v1.0.0
Installed GeometryTypes ─────────────── v0.7.6
Installed WeakRefStrings ────────────── v0.6.1
Installed PooledArrays ──────────────── v0.5.2
Installed DataFrames ────────────────── v0.19.4
Installed OffsetArrays ──────────────── v0.11.2
Installed FillArrays ────────────────── v0.8.2
Installed GR ────────────────────────── v0.44.0
Installed Reexport ──────────────────── v0.2.0
Installed FFMPEG ────────────────────── v0.2.3
Installed PDMats ────────────────────── v0.9.10
Installed StanBase ──────────────────── v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed AxisArrays ────────────────── v0.3.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed AbstractFFTs ──────────────── v0.5.0
Installed Clustering ────────────────── v0.13.3
Installed StanOptimize ──────────────── v1.0.0
Updating `~/.julia/environments/v1.3/Project.toml`
[682df890] + Stan v5.0.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v0.1.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.2
[fdbdab4c] + ElasticArrays v1.0.0
[c87230d0] + FFMPEG v0.2.3
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.6
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v0.4.0
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[d9ec5142] + NamedTupleTools v0.12.0
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[682df890] + Stan v5.0.1
[d0ee94f6] + StanBase v1.0.0
[fb13fc95] + StanDiagnose v1.0.0
[9713c8f3] + StanDump v0.2.0
[fbd8da12] + StanOptimize v1.0.0
[d49c3b98] + StanRun v0.2.1
[c1514b29] + StanSample v1.0.0
[52d0d7a9] + StanSamples v0.1.0
[6ede68ce] + StanVariational v1.0.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[f3b207a7] + StatsPlots v0.12.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing Stan
Resolving package versions...
Status `/tmp/jl_FhyMBh/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[80f14c24] AbstractMCMC v0.1.0
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
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[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
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[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
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[c87230d0] FFMPEG v0.2.3
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[28b8d3ca] GR v0.44.0
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[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[c7f686f2] MCMCChains v0.4.0
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[d9ec5142] NamedTupleTools v0.12.0
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[682df890] Stan v5.0.1
[d0ee94f6] StanBase v1.0.0
[fb13fc95] StanDiagnose v1.0.0
[9713c8f3] StanDump v0.2.0
[fbd8da12] StanOptimize v1.0.0
[d49c3b98] StanRun v0.2.1
[c1514b29] StanSample v1.0.0
[52d0d7a9] StanSamples v0.1.0
[6ede68ce] StanVariational v1.0.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.12.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_13Hk7s/kid.stan updated.
Examples/ARM/Ch03/Kid/kidscore.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
/tmp/jl_vYdLZO/bernoulli.stan updated.
Examples/Bernoulli/bernoulli.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Bernoulli/bernoulli.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Bernoulli/bernoulli.jl:21
/tmp/jl_tIoD3a/binomial.stan updated.
Examples/Binomial/binomial.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Binomial/binomial.jl:30
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Binomial/binomial.jl:30
/tmp/jl_bI0Eix/binormal.stan updated.
Examples/Binormal/binormal.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Binormal/binormal.jl:25
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Binormal/binormal.jl:25
/tmp/jl_3wsZd4/dyes.stan updated.
Examples/Dyes/dyes.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Dyes/dyes.jl:58
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Dyes/dyes.jl:58
/tmp/jl_bkPaJB/schools8.stan updated.
Examples/EightSchools/schools8.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/EightSchools/schools8.jl:33
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/EightSchools/schools8.jl:33
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_b5Jt3f/diagnose.stan updated.
Examples_Stan_Methods/Diagnose/diagnose.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #DiagnoseModel#3(::StanDiagnose.Diagnose, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{DiagnoseModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanDiagnose/p8dbw/src/stanmodel/DiagnoseModel.jl:52
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
/tmp/jl_BcO1GU/generate_quantities.stan updated.
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_F7LQxB/optimize_1.stan updated.
Examples_Stan_Methods/Optimize/optimize.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #OptimizeModel#7(::StanOptimize.Optimize, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{OptimizeModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanOptimize/mdsrE/src/stanmodel/OptimizeModel.jl:52
[8] OptimizeModel at /root/.julia/packages/StanOptimize/mdsrE/src/stanmodel/OptimizeModel.jl:49 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Optimize/optimize.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Optimize/optimize.jl:21
/tmp/jl_Fgb5zi/parse_and_interpolate.stan updated.
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_rkMl80/variational.stan updated.
Examples_Stan_Methods/Variational/variational.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #VariationalModel#2(::StanVariational.Variational, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{VariationalModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanVariational/MMldI/src/stanmodel/VariationalModel.jl:52
[8] VariationalModel at /root/.julia/packages/StanVariational/MMldI/src/stanmodel/VariationalModel.jl:49 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Variational/variational.jl:24
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Variational/variational.jl:24
/tmp/jl_j7lxRJ/diagnostics.stan updated.
Examples_Test_Cases/Diagnostics/diagnostics.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
/tmp/jl_fUP6yt/init_dict.stan updated.
Examples_Test_Cases/InitThetaDict/init_dict.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
/tmp/jl_puKXCd/init_dict_array.stan updated.
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
/tmp/jl_l7WmWX/init_file.stan updated.
Examples_Test_Cases/InitThetaFile/init_file.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
/tmp/jl_B58orI/namedarray.stan updated.
Examples_Test_Cases/NamedArray/namedarray.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
/tmp/jl_7H7mdt/scalar.stan updated.
Examples_Test_Cases/ScalarObs/scalar.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
/tmp/jl_pWQuwe/zerolengtharray.stan updated.
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
Test Summary: | Error Total
Stan.jl v6.0 | 18 18
Examples/ARM/Ch03/Kid/kidscore.jl | 1 1
Examples/Bernoulli/bernoulli.jl | 1 1
Examples/Binomial/binomial.jl | 1 1
Examples/Binormal/binormal.jl | 1 1
Examples/Dyes/dyes.jl | 1 1
Examples/EightSchools/schools8.jl | 1 1
Examples_Stan_Methods/Diagnose/diagnose.jl | 1 1
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl | 1 1
Examples_Stan_Methods/Optimize/optimize.jl | 1 1
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl | 1 1
Examples_Stan_Methods/Variational/variational.jl | 1 1
Examples_Test_Cases/Diagnostics/diagnostics.jl | 1 1
Examples_Test_Cases/InitThetaDict/init_dict.jl | 1 1
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl | 1 1
Examples_Test_Cases/InitThetaFile/init_file.jl | 1 1
Examples_Test_Cases/NamedArray/namedarray.jl | 1 1
Examples_Test_Cases/ScalarObs/scalar.jl | 1 1
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 18 errored, 0 broken.
in expression starting at /root/.julia/packages/Stan/80aQT/test/runtests.jl:30
ERROR: Package Stan errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 9 minutes, 54 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed ColorTypes ────────────────── v0.8.0
Installed Conda ─────────────────────── v1.3.0
Installed GeometryTypes ─────────────── v0.7.6
Installed Plots ─────────────────────── v0.28.2
Installed Colors ────────────────────── v0.9.6
Installed DataValues ────────────────── v0.4.12
Installed Stan ──────────────────────── v5.0.1
Installed DataStructures ────────────── v0.17.6
Installed NaNMath ───────────────────── v0.3.3
Installed WeakRefStrings ────────────── v0.6.1
Installed QuadGK ────────────────────── v2.1.1
Installed Optim ─────────────────────── v0.19.5
Installed ArrayLayouts ──────────────── v0.1.5
Installed Tables ────────────────────── v0.2.11
Installed StanOptimize ──────────────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed ArgCheck ──────────────────── v1.0.1
Installed DataFrames ────────────────── v0.19.4
Installed SpecialFunctions ──────────── v0.8.0
Installed LazyArrays ────────────────── v0.14.10
Installed BinDeps ───────────────────── v0.8.10
Installed IterTools ─────────────────── v1.3.0
Installed StaticArrays ──────────────── v0.12.1
Installed StatsPlots ────────────────── v0.12.0
Installed DiffResults ───────────────── v0.0.4
Installed FixedPointNumbers ─────────── v0.6.1
Installed FillArrays ────────────────── v0.8.2
Installed StatsBase ─────────────────── v0.32.0
Installed MacroTools ────────────────── v0.5.2
Installed Showoff ───────────────────── v0.3.1
Installed StanRun ───────────────────── v0.2.1
Installed AxisAlgorithms ────────────── v1.0.0
Installed ElasticArrays ─────────────── v1.0.0
Installed ForwardDiff ───────────────── v0.10.7
Installed AbstractMCMC ──────────────── v0.1.0
Installed OffsetArrays ──────────────── v0.11.2
Installed LineSearches ──────────────── v7.0.1
Installed StanBase ──────────────────── v1.0.0
Installed Arpack ────────────────────── v0.3.1
Installed Calculus ──────────────────── v0.5.1
Installed URIParser ─────────────────── v0.4.0
Installed AxisArrays ────────────────── v0.3.3
Installed TableTraits ───────────────── v1.0.0
Installed StanDiagnose ──────────────── v1.0.0
Installed FFTW ──────────────────────── v1.1.0
Installed Missings ──────────────────── v0.4.3
Installed CommonSubexpressions ──────── v0.2.0
Installed StanSamples ───────────────── v0.1.0
Installed PooledArrays ──────────────── v0.5.2
Installed Widgets ───────────────────── v0.6.2
Installed StanDump ──────────────────── v0.2.0
Installed DocStringExtensions ───────── v0.8.1
Installed StatsFuns ─────────────────── v0.9.0
Installed BinaryProvider ────────────── v0.5.8
Installed FilePathsBase ─────────────── v0.7.0
Installed ProgressMeter ─────────────── v1.2.0
Installed StanSample ────────────────── v1.0.0
Installed StanVariational ───────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Rmath ─────────────────────── v0.5.1
Installed Interpolations ────────────── v0.12.5
Installed Parameters ────────────────── v0.12.0
Installed InvertedIndices ───────────── v1.0.0
Installed Measures ──────────────────── v0.3.0
Installed DiffRules ─────────────────── v0.1.0
Installed FFMPEG ────────────────────── v0.2.3
Installed AbstractFFTs ──────────────── v0.5.0
Installed Requires ──────────────────── v0.5.2
Installed IntervalSets ──────────────── v0.3.2
Installed ArrayInterface ────────────── v2.0.0
Installed Distances ─────────────────── v0.8.2
Installed NamedTupleTools ───────────── v0.12.0
Installed DataValueInterfaces ───────── v1.0.0
Installed PositiveFactorizations ────── v0.2.3
Installed Reexport ──────────────────── v0.2.0
Installed KernelDensity ─────────────── v0.5.1
Installed Distributions ─────────────── v0.21.9
Installed PlotUtils ─────────────────── v0.6.1
Installed RangeArrays ───────────────── v0.3.1
Installed RecipesBase ───────────────── v0.7.0
Installed CategoricalArrays ─────────── v0.7.3
Installed Contour ───────────────────── v0.5.1
Installed PlotThemes ────────────────── v1.0.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed Clustering ────────────────── v0.13.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed JSON ──────────────────────── v0.21.0
Installed DataAPI ───────────────────── v1.1.0
Installed Documenter ────────────────── v0.24.2
Installed PDMats ────────────────────── v0.9.10
Installed MCMCChains ────────────────── v0.4.0
Installed Parsers ───────────────────── v0.3.10
Installed GR ────────────────────────── v0.44.0
Installed NearestNeighbors ──────────── v0.4.4
Installed DiffEqDiffTools ───────────── v1.5.0
Installed OrderedCollections ────────── v1.1.0
Installed VersionParsing ────────────── v1.1.3
Installed SortingAlgorithms ─────────── v0.3.1
Installed Observables ───────────────── v0.2.3
Updating `~/.julia/environments/v1.3/Project.toml`
[682df890] + Stan v5.0.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
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[10745b16] + Statistics
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Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing Stan
Resolving package versions...
Status `/tmp/jl_YNAzVw/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[80f14c24] AbstractMCMC v0.1.0
[dce04be8] ArgCheck v1.0.1
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[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[682df890] Stan v5.0.1
[d0ee94f6] StanBase v1.0.0
[fb13fc95] StanDiagnose v1.0.0
[9713c8f3] StanDump v0.2.0
[fbd8da12] StanOptimize v1.0.0
[d49c3b98] StanRun v0.2.1
[c1514b29] StanSample v1.0.0
[52d0d7a9] StanSamples v0.1.0
[6ede68ce] StanVariational v1.0.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.12.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_5AMUyo/kid.stan updated.
Examples/ARM/Ch03/Kid/kidscore.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
/tmp/jl_9TV6jO/bernoulli.stan updated.
Examples/Bernoulli/bernoulli.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Bernoulli/bernoulli.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Bernoulli/bernoulli.jl:21
/tmp/jl_Tuemke/binomial.stan updated.
Examples/Binomial/binomial.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Binomial/binomial.jl:30
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Binomial/binomial.jl:30
/tmp/jl_7gDrxE/binormal.stan updated.
Examples/Binormal/binormal.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Binormal/binormal.jl:25
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Binormal/binormal.jl:25
/tmp/jl_ZGF48d/dyes.stan updated.
Examples/Dyes/dyes.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/Dyes/dyes.jl:58
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/Dyes/dyes.jl:58
/tmp/jl_7JYMgO/schools8.stan updated.
Examples/EightSchools/schools8.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples/EightSchools/schools8.jl:33
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples/EightSchools/schools8.jl:33
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_bsoH3x/diagnose.stan updated.
Examples_Stan_Methods/Diagnose/diagnose.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #DiagnoseModel#3(::StanDiagnose.Diagnose, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{DiagnoseModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanDiagnose/p8dbw/src/stanmodel/DiagnoseModel.jl:52
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
/tmp/jl_lsY44h/generate_quantities.stan updated.
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_JBwMT4/optimize_1.stan updated.
Examples_Stan_Methods/Optimize/optimize.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #OptimizeModel#7(::StanOptimize.Optimize, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{OptimizeModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanOptimize/mdsrE/src/stanmodel/OptimizeModel.jl:52
[8] OptimizeModel at /root/.julia/packages/StanOptimize/mdsrE/src/stanmodel/OptimizeModel.jl:49 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Optimize/optimize.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Optimize/optimize.jl:21
/tmp/jl_b5v3UR/parse_and_interpolate.stan updated.
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
WARNING: Method definition #findall(Any, typeof(Base.findall), Union{Base.Regex, AbstractString}, AbstractString) in module Base overwritten in module StanBase.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition findall(Union{Base.Regex, AbstractString}, AbstractString) in module Base at regex.jl:345 overwritten in module StanBase at /root/.julia/packages/StanBase/uoK8W/src/utils/findall.jl:20.
** incremental compilation may be fatally broken for this module **
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/uoK8W/src/StanBase.jl:58
/tmp/jl_FjpFbN/variational.stan updated.
Examples_Stan_Methods/Variational/variational.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #VariationalModel#2(::StanVariational.Variational, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{VariationalModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanVariational/MMldI/src/stanmodel/VariationalModel.jl:52
[8] VariationalModel at /root/.julia/packages/StanVariational/MMldI/src/stanmodel/VariationalModel.jl:49 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Variational/variational.jl:24
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Stan_Methods/Variational/variational.jl:24
/tmp/jl_Zn6dEI/diagnostics.stan updated.
Examples_Test_Cases/Diagnostics/diagnostics.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
/tmp/jl_hzJRYE/init_dict.stan updated.
Examples_Test_Cases/InitThetaDict/init_dict.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
/tmp/jl_Z0PMBB/init_dict_array.stan updated.
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] Type at ./none:0 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
/tmp/jl_ZiWcqy/init_file.stan updated.
Examples_Test_Cases/InitThetaFile/init_file.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
/tmp/jl_vg2Qpv/namedarray.stan updated.
Examples_Test_Cases/NamedArray/namedarray.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
/tmp/jl_rD9GCs/scalar.stan updated.
Examples_Test_Cases/ScalarObs/scalar.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
/tmp/jl_jZndcq/zerolengtharray.stan updated.
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl: Error During Test at /root/.julia/packages/Stan/80aQT/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /root/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] #SampleModel#6(::StanSample.Sample, ::StanBase.RandomSeed, ::StanBase.Init, ::StanBase.Output, ::String, ::Type{SampleModel}, ::String, ::String, ::Array{Int64,1}) at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /root/.julia/packages/StanSample/OJtKP/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:35
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/Stan/80aQT/test/runtests.jl:32
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/Stan/80aQT/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
Test Summary: | Error Total
Stan.jl v6.0 | 18 18
Examples/ARM/Ch03/Kid/kidscore.jl | 1 1
Examples/Bernoulli/bernoulli.jl | 1 1
Examples/Binomial/binomial.jl | 1 1
Examples/Binormal/binormal.jl | 1 1
Examples/Dyes/dyes.jl | 1 1
Examples/EightSchools/schools8.jl | 1 1
Examples_Stan_Methods/Diagnose/diagnose.jl | 1 1
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl | 1 1
Examples_Stan_Methods/Optimize/optimize.jl | 1 1
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl | 1 1
Examples_Stan_Methods/Variational/variational.jl | 1 1
Examples_Test_Cases/Diagnostics/diagnostics.jl | 1 1
Examples_Test_Cases/InitThetaDict/init_dict.jl | 1 1
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl | 1 1
Examples_Test_Cases/InitThetaFile/init_file.jl | 1 1
Examples_Test_Cases/NamedArray/namedarray.jl | 1 1
Examples_Test_Cases/ScalarObs/scalar.jl | 1 1
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 18 errored, 0 broken.
in expression starting at /root/.julia/packages/Stan/80aQT/test/runtests.jl:30
ERROR: Package Stan errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10