If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was successful .
Last evaluation was ago and took 14 minutes, 51 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Missings ──────────────────── v0.4.3
Installed Showoff ───────────────────── v0.3.1
Installed Inflate ───────────────────── v0.1.1
Installed TableTraits ───────────────── v1.0.0
Installed FixedPolynomials ──────────── v0.4.0
Installed MbedTLS ───────────────────── v0.7.0
Installed ReactionNetworkImporters ──── v0.1.5
Installed DataFrames ────────────────── v0.19.4
Installed GenericSchur ──────────────── v0.3.0
Installed BinaryProvider ────────────── v0.5.8
Installed Contour ───────────────────── v0.5.1
Installed CommonSubexpressions ──────── v0.2.0
Installed ElasticArrays ─────────────── v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed Measures ──────────────────── v0.3.0
Installed Colors ────────────────────── v0.9.6
Installed Plots ─────────────────────── v0.28.2
Installed DynamicPolynomials ────────── v0.3.3
Installed Adapt ─────────────────────── v1.0.0
Installed Polynomials ───────────────── v0.6.0
Installed HomotopyContinuation ──────── v1.3.1
Installed DiffEqBase ────────────────── v6.7.0
Installed URIParser ─────────────────── v0.4.0
Installed DocStringExtensions ───────── v0.8.1
Installed ExponentialUtilities ──────── v1.5.1
Installed DataValueInterfaces ───────── v1.0.0
Installed SymEngine ─────────────────── v0.7.0
Installed MultivariatePolynomials ───── v0.3.2
Installed Requires ──────────────────── v0.5.2
Installed StaticPolynomials ─────────── v1.3.3
Installed PooledArrays ──────────────── v0.5.2
Installed DoubleFloats ──────────────── v1.0.1
Installed Reexport ──────────────────── v0.2.0
Installed TimerOutputs ──────────────── v0.5.3
Installed InvertedIndices ───────────── v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed Compat ────────────────────── v2.2.0
Installed VertexSafeGraphs ──────────── v0.1.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Tables ────────────────────── v0.2.11
Installed ForwardDiff ───────────────── v0.10.7
Installed IterTools ─────────────────── v1.3.0
Installed GenericSVD ────────────────── v0.2.2
Installed IniFile ───────────────────── v0.5.0
Installed IterableTables ────────────── v1.0.0
Installed TableShowUtils ────────────── v0.2.5
Installed TextParse ─────────────────── v0.9.1
Installed TableTraitsUtils ──────────── v1.0.1
Installed ProjectiveVectors ─────────── v1.1.2
Installed Roots ─────────────────────── v0.8.3
Installed RecipesBase ───────────────── v0.7.0
Installed DataStructures ────────────── v0.17.6
Installed TreeViews ─────────────────── v0.3.0
Installed WeakRefStrings ────────────── v0.6.1
Installed RandomNumbers ─────────────── v1.3.0
Installed DiffEqJump ────────────────── v6.3.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed IterativeSolvers ──────────── v0.8.1
Installed DiffRules ─────────────────── v0.1.0
Installed Parsers ───────────────────── v0.3.10
Installed LightGraphs ───────────────── v1.3.0
Installed RecursiveFactorization ────── v0.1.0
Installed Crayons ───────────────────── v4.0.1
Installed TranscodingStreams ────────── v0.9.5
Installed DiffEqDiffTools ───────────── v1.5.0
Installed FFMPEG ────────────────────── v0.2.3
Installed SparseDiffTools ───────────── v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed RecursiveArrayTools ───────── v1.2.0
Installed CodecZlib ─────────────────── v0.6.0
Installed ArrayInterface ────────────── v2.0.0
Installed Quadmath ──────────────────── v0.5.2
Installed StaticArrays ──────────────── v0.12.1
Installed DiffEqBiological ──────────── v4.1.0
Installed NaNMath ───────────────────── v0.3.3
Installed DiffResults ───────────────── v0.0.4
Installed HTTP ──────────────────────── v0.8.8
Installed Latexify ──────────────────── v0.12.3
Installed SimpleTraits ──────────────── v0.9.1
Installed PrettyTables ──────────────── v0.6.0
Installed MuladdMacro ───────────────── v0.2.1
Installed Parameters ────────────────── v0.12.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PoissonRandom ─────────────── v0.4.0
Installed GeometryTypes ─────────────── v0.7.6
Installed CategoricalArrays ─────────── v0.7.3
Installed SortingAlgorithms ─────────── v0.3.1
Installed DataValues ────────────────── v0.4.12
Installed PlotUtils ─────────────────── v0.6.1
Installed ColorTypes ────────────────── v0.8.0
Installed Formatting ────────────────── v0.4.1
Installed MacroTools ────────────────── v0.5.2
Installed CSVFiles ──────────────────── v0.16.1
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed SpecialFunctions ──────────── v0.8.0
Installed MixedSubdivisions ─────────── v1.0.0
Installed PlotThemes ────────────────── v1.0.0
Installed BinDeps ───────────────────── v0.8.10
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Sundials ──────────────────── v3.8.1
Installed ProgressMeter ─────────────── v1.2.0
Installed Nullables ─────────────────── v1.0.0
Installed FileIO ────────────────────── v1.1.0
Installed GR ────────────────────────── v0.44.0
Updating `~/.julia/environments/v1.2/Project.toml`
[b4db0fb7] + ReactionNetworkImporters v0.1.5
Updating `~/.julia/environments/v1.2/Manifest.toml`
[79e6a3ab] + Adapt v1.0.0
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[5d742f6a] + CSVFiles v0.16.1
[324d7699] + CategoricalArrays v0.7.3
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[d38c429a] + Contour v0.5.1
[a8cc5b0e] + Crayons v4.0.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[2b5f629d] + DiffEqBase v6.7.0
[eb300fae] + DiffEqBiological v4.1.0
[01453d9d] + DiffEqDiffTools v1.5.0
[c894b116] + DiffEqJump v6.3.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[ffbed154] + DocStringExtensions v0.8.1
[497a8b3b] + DoubleFloats v1.0.1
[7c1d4256] + DynamicPolynomials v0.3.3
[fdbdab4c] + ElasticArrays v1.0.0
[d4d017d3] + ExponentialUtilities v1.5.1
[c87230d0] + FFMPEG v0.2.3
[5789e2e9] + FileIO v1.1.0
[53c48c17] + FixedPointNumbers v0.6.1
[3dd14ad9] + FixedPolynomials v0.4.0
[59287772] + Formatting v0.4.1
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[28b8d3ca] + GR v0.44.0
[01680d73] + GenericSVD v0.2.2
[c145ed77] + GenericSchur v0.3.0
[4d00f742] + GeometryTypes v0.7.6
[cd3eb016] + HTTP v0.8.8
[f213a82b] + HomotopyContinuation v1.3.1
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[1c8ee90f] + IterableTables v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[23fbe1c1] + Latexify v0.12.3
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[291d046c] + MixedSubdivisions v1.0.0
[46d2c3a1] + MuladdMacro v0.2.1
[102ac46a] + MultivariatePolynomials v0.3.2
[77ba4419] + NaNMath v0.3.3
[4d1e1d77] + Nullables v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[1dea7af3] + OrdinaryDiffEq v5.25.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[e409e4f3] + PoissonRandom v0.4.0
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[08abe8d2] + PrettyTables v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[01f381cc] + ProjectiveVectors v1.1.2
[be4d8f0f] + Quadmath v0.5.2
[e6cf234a] + RandomNumbers v1.3.0
[b4db0fb7] + ReactionNetworkImporters v0.1.5
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.0.0
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[62e018b1] + StaticPolynomials v1.3.3
[2913bbd2] + StatsBase v0.32.0
[c3572dad] + Sundials v3.8.1
[123dc426] + SymEngine v0.7.0
[5e66a065] + TableShowUtils v0.2.5
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[e0df1984] + TextParse v0.9.1
[a759f4b9] + TimerOutputs v0.5.3
[3bb67fe8] + TranscodingStreams v0.9.5
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[19fa3120] + VertexSafeGraphs v0.1.0
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS ─────────→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building SymEngine ───────→ `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Building CodecZlib ───────→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building Sundials ────────→ `~/.julia/packages/Sundials/MllUG/deps/build.log`
Testing ReactionNetworkImporters
Status `/tmp/jl_mez3dS/Manifest.toml`
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[5d742f6a] CSVFiles v0.16.1
[324d7699] CategoricalArrays v0.7.3
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[d38c429a] Contour v0.5.1
[a8cc5b0e] Crayons v4.0.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[eb300fae] DiffEqBiological v4.1.0
[01453d9d] DiffEqDiffTools v1.5.0
[c894b116] DiffEqJump v6.3.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[ffbed154] DocStringExtensions v0.8.1
[497a8b3b] DoubleFloats v1.0.1
[7c1d4256] DynamicPolynomials v0.3.3
[fdbdab4c] ElasticArrays v1.0.0
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[5789e2e9] FileIO v1.1.0
[53c48c17] FixedPointNumbers v0.6.1
[3dd14ad9] FixedPolynomials v0.4.0
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[01680d73] GenericSVD v0.2.2
[c145ed77] GenericSchur v0.3.0
[4d00f742] GeometryTypes v0.7.6
[cd3eb016] HTTP v0.8.8
[f213a82b] HomotopyContinuation v1.3.1
[d25df0c9] Inflate v0.1.1
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[1c8ee90f] IterableTables v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[23fbe1c1] Latexify v0.12.3
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[739be429] MbedTLS v0.7.0
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[291d046c] MixedSubdivisions v1.0.0
[46d2c3a1] MuladdMacro v0.2.1
[102ac46a] MultivariatePolynomials v0.3.2
[77ba4419] NaNMath v0.3.3
[4d1e1d77] Nullables v1.0.0
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[e409e4f3] PoissonRandom v0.4.0
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[08abe8d2] PrettyTables v0.6.0
[92933f4c] ProgressMeter v1.2.0
[01f381cc] ProjectiveVectors v1.1.2
[be4d8f0f] Quadmath v0.5.2
[e6cf234a] RandomNumbers v1.3.0
[b4db0fb7] ReactionNetworkImporters v0.1.5
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[62e018b1] StaticPolynomials v1.3.3
[2913bbd2] StatsBase v0.32.0
[c3572dad] Sundials v3.8.1
[123dc426] SymEngine v0.7.0
[5e66a065] TableShowUtils v0.2.5
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[e0df1984] TextParse v0.9.1
[a759f4b9] TimerOutputs v0.5.3
[3bb67fe8] TranscodingStreams v0.9.5
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:35
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:35
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:36
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:36
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:36
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:36
Test Summary: | Pass Total
BNG Birth-Death Test | 2 2
477.557605 seconds (85.72 M allocations: 4.165 GiB, 0.84% gc time)
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:26
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:26
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:38
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:38
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:39
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:39
Test Summary: | Pass Total
BNG Repressilator Test | 2 2
4.382861 seconds (4.31 M allocations: 210.508 MiB, 3.47% gc time)
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:26
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:26
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:39
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:40
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:40
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:40
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:40
Test Summary: | Pass Total
BNG Higher Order Test | 2 2
3.755462 seconds (3.68 M allocations: 179.834 MiB, 8.25% gc time)
Test Summary: | Pass Total
Matrix Input Test | 6 6
15.820563 seconds (17.52 M allocations: 877.957 MiB, 3.57% gc time)
501.857995 seconds (111.69 M allocations: 5.427 GiB, 1.01% gc time)
Testing ReactionNetworkImporters tests passed
Results with Julia v1.3.0
Testing was successful .
Last evaluation was ago and took 16 minutes, 12 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed IniFile ───────────────────── v0.5.0
Installed PlotThemes ────────────────── v1.0.0
Installed TableShowUtils ────────────── v0.2.5
Installed SortingAlgorithms ─────────── v0.3.1
Installed Quadmath ──────────────────── v0.5.2
Installed IterableTables ────────────── v1.0.0
Installed Sundials ──────────────────── v3.8.1
Installed ReactionNetworkImporters ──── v0.1.5
Installed DiffResults ───────────────── v0.0.4
Installed ExponentialUtilities ──────── v1.5.1
Installed DataStructures ────────────── v0.17.6
Installed CSVFiles ──────────────────── v0.16.1
Installed DocStringExtensions ───────── v0.8.1
Installed Roots ─────────────────────── v0.8.3
Installed StaticArrays ──────────────── v0.12.1
Installed FileIO ────────────────────── v1.1.0
Installed CategoricalArrays ─────────── v0.7.3
Installed Compat ────────────────────── v2.2.0
Installed FunctionWrappers ──────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed Parsers ───────────────────── v0.3.10
Installed InvertedIndices ───────────── v1.0.0
Installed ProgressMeter ─────────────── v1.2.0
Installed IterTools ─────────────────── v1.3.0
Installed MacroTools ────────────────── v0.5.2
Installed MultivariatePolynomials ───── v0.3.2
Installed Missings ──────────────────── v0.4.3
Installed TreeViews ─────────────────── v0.3.0
Installed DiffEqBiological ──────────── v4.1.0
Installed TableTraits ───────────────── v1.0.0
Installed Plots ─────────────────────── v0.28.2
Installed FixedPointNumbers ─────────── v0.6.1
Installed StaticPolynomials ─────────── v1.3.3
Installed Parameters ────────────────── v0.12.0
Installed TimerOutputs ──────────────── v0.5.3
Installed OrderedCollections ────────── v1.1.0
Installed SpecialFunctions ──────────── v0.9.0
Installed Crayons ───────────────────── v4.0.1
Installed Showoff ───────────────────── v0.3.1
Installed JSON ──────────────────────── v0.21.0
Installed ColorTypes ────────────────── v0.8.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed PlotUtils ─────────────────── v0.6.1
Installed LightGraphs ───────────────── v1.3.0
Installed DynamicPolynomials ────────── v0.3.3
Installed Tables ────────────────────── v0.2.11
Installed DataAPI ───────────────────── v1.1.0
Installed CommonSubexpressions ──────── v0.2.0
Installed RecipesBase ───────────────── v0.7.0
Installed DoubleFloats ──────────────── v1.0.1
Installed HomotopyContinuation ──────── v1.3.1
Installed MbedTLS ───────────────────── v0.7.0
Installed Polynomials ───────────────── v0.6.0
Installed NaNMath ───────────────────── v0.3.3
Installed ForwardDiff ───────────────── v0.10.7
Installed GenericSVD ────────────────── v0.2.2
Installed FixedPolynomials ──────────── v0.4.0
Installed Adapt ─────────────────────── v1.0.0
Installed Nullables ─────────────────── v1.0.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DataValues ────────────────── v0.4.12
Installed SparseDiffTools ───────────── v1.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed GenericSchur ──────────────── v0.3.0
Installed DiffRules ─────────────────── v0.1.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed Colors ────────────────────── v0.9.6
Installed TextParse ─────────────────── v0.9.1
Installed PoissonRandom ─────────────── v0.4.0
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed ArrayInterface ────────────── v2.0.0
Installed MixedSubdivisions ─────────── v1.0.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed DiffEqJump ────────────────── v6.3.0
Installed Measures ──────────────────── v0.3.0
Installed Inflate ───────────────────── v0.1.1
Installed DiffEqBase ────────────────── v6.7.0
Installed ElasticArrays ─────────────── v1.0.0
Installed ProjectiveVectors ─────────── v1.1.2
Installed Requires ──────────────────── v0.5.2
Installed CodecZlib ─────────────────── v0.6.0
Installed Contour ───────────────────── v0.5.1
Installed MuladdMacro ───────────────── v0.2.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed HTTP ──────────────────────── v0.8.8
Installed SimpleTraits ──────────────── v0.9.1
Installed GR ────────────────────────── v0.44.0
Installed Latexify ──────────────────── v0.12.3
Installed PooledArrays ──────────────── v0.5.2
Installed RecursiveArrayTools ───────── v1.2.0
Installed RandomNumbers ─────────────── v1.3.0
Installed GeometryTypes ─────────────── v0.7.6
Installed WeakRefStrings ────────────── v0.6.1
Installed VertexSafeGraphs ──────────── v0.1.0
Installed FFMPEG ────────────────────── v0.2.3
Installed TranscodingStreams ────────── v0.9.5
Installed DataFrames ────────────────── v0.19.4
Installed RecursiveFactorization ────── v0.1.0
Installed Reexport ──────────────────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed Formatting ────────────────── v0.4.1
Installed IterativeSolvers ──────────── v0.8.1
Installed SymEngine ─────────────────── v0.7.0
Installed PrettyTables ──────────────── v0.6.0
Updating `~/.julia/environments/v1.3/Project.toml`
[b4db0fb7] + ReactionNetworkImporters v0.1.5
Updating `~/.julia/environments/v1.3/Manifest.toml`
[79e6a3ab] + Adapt v1.0.0
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.0.0
[b99e7846] + BinaryProvider v0.5.8
[5d742f6a] + CSVFiles v0.16.1
[324d7699] + CategoricalArrays v0.7.3
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[d38c429a] + Contour v0.5.1
[a8cc5b0e] + Crayons v4.0.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[2b5f629d] + DiffEqBase v6.7.0
[eb300fae] + DiffEqBiological v4.1.0
[01453d9d] + DiffEqDiffTools v1.5.0
[c894b116] + DiffEqJump v6.3.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[ffbed154] + DocStringExtensions v0.8.1
[497a8b3b] + DoubleFloats v1.0.1
[7c1d4256] + DynamicPolynomials v0.3.3
[fdbdab4c] + ElasticArrays v1.0.0
[d4d017d3] + ExponentialUtilities v1.5.1
[c87230d0] + FFMPEG v0.2.3
[5789e2e9] + FileIO v1.1.0
[53c48c17] + FixedPointNumbers v0.6.1
[3dd14ad9] + FixedPolynomials v0.4.0
[59287772] + Formatting v0.4.1
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[28b8d3ca] + GR v0.44.0
[01680d73] + GenericSVD v0.2.2
[c145ed77] + GenericSchur v0.3.0
[4d00f742] + GeometryTypes v0.7.6
[cd3eb016] + HTTP v0.8.8
[f213a82b] + HomotopyContinuation v1.3.1
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[1c8ee90f] + IterableTables v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[23fbe1c1] + Latexify v0.12.3
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[291d046c] + MixedSubdivisions v1.0.0
[46d2c3a1] + MuladdMacro v0.2.1
[102ac46a] + MultivariatePolynomials v0.3.2
[77ba4419] + NaNMath v0.3.3
[4d1e1d77] + Nullables v1.0.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[1dea7af3] + OrdinaryDiffEq v5.25.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[e409e4f3] + PoissonRandom v0.4.0
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[08abe8d2] + PrettyTables v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[01f381cc] + ProjectiveVectors v1.1.2
[be4d8f0f] + Quadmath v0.5.2
[e6cf234a] + RandomNumbers v1.3.0
[b4db0fb7] + ReactionNetworkImporters v0.1.5
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.0.0
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[62e018b1] + StaticPolynomials v1.3.3
[2913bbd2] + StatsBase v0.32.0
[c3572dad] + Sundials v3.8.1
[123dc426] + SymEngine v0.7.0
[5e66a065] + TableShowUtils v0.2.5
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[e0df1984] + TextParse v0.9.1
[a759f4b9] + TimerOutputs v0.5.3
[3bb67fe8] + TranscodingStreams v0.9.5
[a2a6695c] + TreeViews v0.3.0
[19fa3120] + VertexSafeGraphs v0.1.0
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Sundials ─→ `~/.julia/packages/Sundials/MllUG/deps/build.log`
Building GR ───────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ───→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building SymEngine → `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Testing ReactionNetworkImporters
Status `/tmp/jl_vHCRDh/Manifest.toml`
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[b99e7846] BinaryProvider v0.5.8
[5d742f6a] CSVFiles v0.16.1
[324d7699] CategoricalArrays v0.7.3
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[d38c429a] Contour v0.5.1
[a8cc5b0e] Crayons v4.0.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[eb300fae] DiffEqBiological v4.1.0
[01453d9d] DiffEqDiffTools v1.5.0
[c894b116] DiffEqJump v6.3.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[ffbed154] DocStringExtensions v0.8.1
[497a8b3b] DoubleFloats v1.0.1
[7c1d4256] DynamicPolynomials v0.3.3
[fdbdab4c] ElasticArrays v1.0.0
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[5789e2e9] FileIO v1.1.0
[53c48c17] FixedPointNumbers v0.6.1
[3dd14ad9] FixedPolynomials v0.4.0
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[01680d73] GenericSVD v0.2.2
[c145ed77] GenericSchur v0.3.0
[4d00f742] GeometryTypes v0.7.6
[cd3eb016] HTTP v0.8.8
[f213a82b] HomotopyContinuation v1.3.1
[d25df0c9] Inflate v0.1.1
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[1c8ee90f] IterableTables v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[23fbe1c1] Latexify v0.12.3
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[739be429] MbedTLS v0.7.0
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[291d046c] MixedSubdivisions v1.0.0
[46d2c3a1] MuladdMacro v0.2.1
[102ac46a] MultivariatePolynomials v0.3.2
[77ba4419] NaNMath v0.3.3
[4d1e1d77] Nullables v1.0.0
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[e409e4f3] PoissonRandom v0.4.0
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[08abe8d2] PrettyTables v0.6.0
[92933f4c] ProgressMeter v1.2.0
[01f381cc] ProjectiveVectors v1.1.2
[be4d8f0f] Quadmath v0.5.2
[e6cf234a] RandomNumbers v1.3.0
[b4db0fb7] ReactionNetworkImporters v0.1.5
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[62e018b1] StaticPolynomials v1.3.3
[2913bbd2] StatsBase v0.32.0
[c3572dad] Sundials v3.8.1
[123dc426] SymEngine v0.7.0
[5e66a065] TableShowUtils v0.2.5
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[e0df1984] TextParse v0.9.1
[a759f4b9] TimerOutputs v0.5.3
[3bb67fe8] TranscodingStreams v0.9.5
[a2a6695c] TreeViews v0.3.0
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:35
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:35
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:36
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:36
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:36
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:36
Test Summary: | Pass Total
BNG Birth-Death Test | 2 2
525.723326 seconds (92.86 M allocations: 4.492 GiB, 0.74% gc time)
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:26
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:26
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:38
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:38
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:39
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:39
Test Summary: | Pass Total
BNG Repressilator Test | 2 2
5.743154 seconds (5.21 M allocations: 249.080 MiB, 1.29% gc time)
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:26
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:26
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:39
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:40
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:40
Test Summary: | Pass Total
BNG Higher Order Test | 2 2
4.772396 seconds (3.54 M allocations: 170.318 MiB, 1.83% gc time)
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:40
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:40
Test Summary: | Pass Total
Matrix Input Test | 6 6
20.478088 seconds (16.32 M allocations: 810.740 MiB, 2.11% gc time)
557.107038 seconds (118.35 M allocations: 5.713 GiB, 0.81% gc time)
Testing ReactionNetworkImporters tests passed
Results with Julia v1.3.1-pre-7704df0a5a
Testing was successful .
Last evaluation was ago and took 17 minutes, 12 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed ColorTypes ────────────────── v0.8.0
Installed GeometryTypes ─────────────── v0.7.6
Installed Plots ─────────────────────── v0.28.2
Installed DataStructures ────────────── v0.17.6
Installed Colors ────────────────────── v0.9.6
Installed ReactionNetworkImporters ──── v0.1.5
Installed DataValues ────────────────── v0.4.12
Installed LightGraphs ───────────────── v1.3.0
Installed FunctionWrappers ──────────── v1.0.0
Installed WeakRefStrings ────────────── v0.6.1
Installed NaNMath ───────────────────── v0.3.3
Installed Adapt ─────────────────────── v1.0.0
Installed Tables ────────────────────── v0.2.11
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed SparseDiffTools ───────────── v1.0.0
Installed IterativeSolvers ──────────── v0.8.1
Installed Polynomials ───────────────── v0.6.0
Installed Formatting ────────────────── v0.4.1
Installed GenericSchur ──────────────── v0.3.0
Installed SpecialFunctions ──────────── v0.9.0
Installed DataFrames ────────────────── v0.19.4
Installed SymEngine ─────────────────── v0.7.0
Installed MbedTLS ───────────────────── v0.7.0
Installed Quadmath ──────────────────── v0.5.2
Installed Compat ────────────────────── v2.2.0
Installed MultivariatePolynomials ───── v0.3.2
Installed IterTools ─────────────────── v1.3.0
Installed ProjectiveVectors ─────────── v1.1.2
Installed FixedPointNumbers ─────────── v0.6.1
Installed StaticArrays ──────────────── v0.12.1
Installed MacroTools ────────────────── v0.5.2
Installed Roots ─────────────────────── v0.8.3
Installed DiffEqBiological ──────────── v4.1.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed ElasticArrays ─────────────── v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed Showoff ───────────────────── v0.3.1
Installed Inflate ───────────────────── v0.1.1
Installed DiffResults ───────────────── v0.0.4
Installed ExponentialUtilities ──────── v1.5.1
Installed ForwardDiff ───────────────── v0.10.7
Installed FileIO ────────────────────── v1.1.0
Installed HTTP ──────────────────────── v0.8.8
Installed PooledArrays ──────────────── v0.5.2
Installed CodecZlib ─────────────────── v0.6.0
Installed CommonSubexpressions ──────── v0.2.0
Installed TableTraits ───────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed Sundials ──────────────────── v3.8.1
Installed BinaryProvider ────────────── v0.5.8
Installed DocStringExtensions ───────── v0.8.1
Installed TranscodingStreams ────────── v0.9.5
Installed TableTraitsUtils ──────────── v1.0.1
Installed ProgressMeter ─────────────── v1.2.0
Installed MuladdMacro ───────────────── v0.2.1
Installed InvertedIndices ───────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed HomotopyContinuation ──────── v1.3.1
Installed PrettyTables ──────────────── v0.6.0
Installed FFMPEG ────────────────────── v0.2.3
Installed Measures ──────────────────── v0.3.0
Installed PoissonRandom ─────────────── v0.4.0
Installed ArrayInterface ────────────── v2.0.0
Installed Crayons ───────────────────── v4.0.1
Installed TextParse ─────────────────── v0.9.1
Installed DiffRules ─────────────────── v0.1.0
Installed Requires ──────────────────── v0.5.2
Installed IniFile ───────────────────── v0.5.0
Installed SimpleTraits ──────────────── v0.9.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed IterableTables ────────────── v1.0.0
Installed DoubleFloats ──────────────── v1.0.1
Installed GenericSVD ────────────────── v0.2.2
Installed DataValueInterfaces ───────── v1.0.0
Installed RecursiveFactorization ────── v0.1.0
Installed PlotUtils ─────────────────── v0.6.1
Installed Reexport ──────────────────── v0.2.0
Installed Contour ───────────────────── v0.5.1
Installed CSVFiles ──────────────────── v0.16.1
Installed TableShowUtils ────────────── v0.2.5
Installed RecipesBase ───────────────── v0.7.0
Installed DiffEqBase ────────────────── v6.7.0
Installed PlotThemes ────────────────── v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed VertexSafeGraphs ──────────── v0.1.0
Installed DiffEqJump ────────────────── v6.3.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Latexify ──────────────────── v0.12.3
Installed RandomNumbers ─────────────── v1.3.0
Installed StaticPolynomials ─────────── v1.3.3
Installed DataAPI ───────────────────── v1.1.0
Installed DynamicPolynomials ────────── v0.3.3
Installed JSON ──────────────────────── v0.21.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Parsers ───────────────────── v0.3.10
Installed TreeViews ─────────────────── v0.3.0
Installed OrderedCollections ────────── v1.1.0
Installed FixedPolynomials ──────────── v0.4.0
Installed GR ────────────────────────── v0.44.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed TimerOutputs ──────────────── v0.5.3
Installed Nullables ─────────────────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed MixedSubdivisions ─────────── v1.0.0
Updating `~/.julia/environments/v1.3/Project.toml`
[b4db0fb7] + ReactionNetworkImporters v0.1.5
Updating `~/.julia/environments/v1.3/Manifest.toml`
[79e6a3ab] + Adapt v1.0.0
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.0.0
[b99e7846] + BinaryProvider v0.5.8
[5d742f6a] + CSVFiles v0.16.1
[324d7699] + CategoricalArrays v0.7.3
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[d38c429a] + Contour v0.5.1
[a8cc5b0e] + Crayons v4.0.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[2b5f629d] + DiffEqBase v6.7.0
[eb300fae] + DiffEqBiological v4.1.0
[01453d9d] + DiffEqDiffTools v1.5.0
[c894b116] + DiffEqJump v6.3.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[ffbed154] + DocStringExtensions v0.8.1
[497a8b3b] + DoubleFloats v1.0.1
[7c1d4256] + DynamicPolynomials v0.3.3
[fdbdab4c] + ElasticArrays v1.0.0
[d4d017d3] + ExponentialUtilities v1.5.1
[c87230d0] + FFMPEG v0.2.3
[5789e2e9] + FileIO v1.1.0
[53c48c17] + FixedPointNumbers v0.6.1
[3dd14ad9] + FixedPolynomials v0.4.0
[59287772] + Formatting v0.4.1
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[28b8d3ca] + GR v0.44.0
[01680d73] + GenericSVD v0.2.2
[c145ed77] + GenericSchur v0.3.0
[4d00f742] + GeometryTypes v0.7.6
[cd3eb016] + HTTP v0.8.8
[f213a82b] + HomotopyContinuation v1.3.1
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[1c8ee90f] + IterableTables v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[23fbe1c1] + Latexify v0.12.3
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[291d046c] + MixedSubdivisions v1.0.0
[46d2c3a1] + MuladdMacro v0.2.1
[102ac46a] + MultivariatePolynomials v0.3.2
[77ba4419] + NaNMath v0.3.3
[4d1e1d77] + Nullables v1.0.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[1dea7af3] + OrdinaryDiffEq v5.25.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[e409e4f3] + PoissonRandom v0.4.0
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[08abe8d2] + PrettyTables v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[01f381cc] + ProjectiveVectors v1.1.2
[be4d8f0f] + Quadmath v0.5.2
[e6cf234a] + RandomNumbers v1.3.0
[b4db0fb7] + ReactionNetworkImporters v0.1.5
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.0.0
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[62e018b1] + StaticPolynomials v1.3.3
[2913bbd2] + StatsBase v0.32.0
[c3572dad] + Sundials v3.8.1
[123dc426] + SymEngine v0.7.0
[5e66a065] + TableShowUtils v0.2.5
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[e0df1984] + TextParse v0.9.1
[a759f4b9] + TimerOutputs v0.5.3
[3bb67fe8] + TranscodingStreams v0.9.5
[a2a6695c] + TreeViews v0.3.0
[19fa3120] + VertexSafeGraphs v0.1.0
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building GR ───────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ───→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building SymEngine → `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building Sundials ─→ `~/.julia/packages/Sundials/MllUG/deps/build.log`
Testing ReactionNetworkImporters
Status `/tmp/jl_GCw89H/Manifest.toml`
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[b99e7846] BinaryProvider v0.5.8
[5d742f6a] CSVFiles v0.16.1
[324d7699] CategoricalArrays v0.7.3
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[d38c429a] Contour v0.5.1
[a8cc5b0e] Crayons v4.0.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[eb300fae] DiffEqBiological v4.1.0
[01453d9d] DiffEqDiffTools v1.5.0
[c894b116] DiffEqJump v6.3.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[ffbed154] DocStringExtensions v0.8.1
[497a8b3b] DoubleFloats v1.0.1
[7c1d4256] DynamicPolynomials v0.3.3
[fdbdab4c] ElasticArrays v1.0.0
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[5789e2e9] FileIO v1.1.0
[53c48c17] FixedPointNumbers v0.6.1
[3dd14ad9] FixedPolynomials v0.4.0
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[01680d73] GenericSVD v0.2.2
[c145ed77] GenericSchur v0.3.0
[4d00f742] GeometryTypes v0.7.6
[cd3eb016] HTTP v0.8.8
[f213a82b] HomotopyContinuation v1.3.1
[d25df0c9] Inflate v0.1.1
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[1c8ee90f] IterableTables v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[23fbe1c1] Latexify v0.12.3
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[739be429] MbedTLS v0.7.0
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[291d046c] MixedSubdivisions v1.0.0
[46d2c3a1] MuladdMacro v0.2.1
[102ac46a] MultivariatePolynomials v0.3.2
[77ba4419] NaNMath v0.3.3
[4d1e1d77] Nullables v1.0.0
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[e409e4f3] PoissonRandom v0.4.0
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[08abe8d2] PrettyTables v0.6.0
[92933f4c] ProgressMeter v1.2.0
[01f381cc] ProjectiveVectors v1.1.2
[be4d8f0f] Quadmath v0.5.2
[e6cf234a] RandomNumbers v1.3.0
[b4db0fb7] ReactionNetworkImporters v0.1.5
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[62e018b1] StaticPolynomials v1.3.3
[2913bbd2] StatsBase v0.32.0
[c3572dad] Sundials v3.8.1
[123dc426] SymEngine v0.7.0
[5e66a065] TableShowUtils v0.2.5
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[e0df1984] TextParse v0.9.1
[a759f4b9] TimerOutputs v0.5.3
[3bb67fe8] TranscodingStreams v0.9.5
[a2a6695c] TreeViews v0.3.0
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:35
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:35
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:36
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:36
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_nullrxs_odes.jl:36
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_nullrxs_odes.jl:36
Test Summary: | Pass Total
BNG Birth-Death Test | 2 2
588.425188 seconds (92.66 M allocations: 4.463 GiB, 0.87% gc time)
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:26
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:26
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:38
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:38
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:39
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_repressilator_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_repressilator_odes.jl:39
Test Summary: | Pass Total
BNG Repressilator Test | 2 2
9.110916 seconds (5.22 M allocations: 249.436 MiB, 2.42% gc time)
getting gdat file...done
Parsing parameters...done
Adding parameters...done
Parsing species...done
Adding species...done
Parsing and adding reactions...done
Parsing groups...done
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:26
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:26
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:39
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:39
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:40
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:40
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_higherorder_odes.jl:40
└ @ Core ~/.julia/packages/ReactionNetworkImporters/nZg9K/test/test_higherorder_odes.jl:40
Test Summary: | Pass Total
BNG Higher Order Test | 2 2
6.415895 seconds (3.54 M allocations: 170.301 MiB, 1.99% gc time)
Test Summary: | Pass Total
Matrix Input Test | 6 6
27.637575 seconds (16.32 M allocations: 810.753 MiB, 2.15% gc time)
632.363262 seconds (118.15 M allocations: 5.685 GiB, 0.97% gc time)
Testing ReactionNetworkImporters tests passed