If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 27 seconds.
Click here to download the log file.
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Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed YAML ──────────────────────── v0.3.2
Installed DimensionalPlotRecipes ────── v1.0.0
Installed Inflate ───────────────────── v0.1.1
Installed TableTraits ───────────────── v1.0.0
Installed ComputationalResources ────── v0.3.0
Installed ReactionMechanismSimulator ── v0.1.0
Installed LineSearches ──────────────── v7.0.1
Installed CatIndices ────────────────── v0.2.0
Installed ConstructionBase ──────────── v1.0.0
Installed Colors ────────────────────── v0.9.6
Installed AbstractFFTs ──────────────── v0.4.1
Installed BinaryProvider ────────────── v0.5.8
Installed CommonSubexpressions ──────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed RangeArrays ───────────────── v0.3.1
Installed Conda ─────────────────────── v1.3.0
Installed Codecs ────────────────────── v0.5.0
Installed ImageMorphology ───────────── v0.1.1
Installed Adapt ─────────────────────── v1.0.0
Installed DiffEqBase ────────────────── v6.7.0
Installed MultiScaleArrays ──────────── v1.5.0
Installed Clp ───────────────────────── v0.6.2
Installed AxisAlgorithms ────────────── v1.0.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed URIParser ─────────────────── v0.4.0
Installed ResettableStacks ──────────── v1.0.0
Installed DocStringExtensions ───────── v0.8.1
Installed Requires ──────────────────── v0.5.2
Installed ExponentialUtilities ──────── v1.5.1
Installed NLSolversBase ─────────────── v7.5.0
Installed IdentityRanges ────────────── v0.3.0
Installed ImageDistances ────────────── v0.1.1
Installed Images ────────────────────── v0.17.3
Installed Reexport ──────────────────── v0.2.0
Installed ImageShow ─────────────────── v0.2.0
Installed OffsetArrays ──────────────── v0.11.2
Installed PyCall ────────────────────── v1.91.2
Installed Compat ────────────────────── v2.2.0
Installed MathProgBase ──────────────── v0.7.7
Installed GenericSVD ────────────────── v0.2.2
Installed ForwardDiff ───────────────── v0.10.7
Installed VertexSafeGraphs ──────────── v0.1.0
Installed OrderedCollections ────────── v1.1.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Calculus ──────────────────── v0.5.1
Installed CoordinateTransformations ─── v0.5.0
Installed IterTools ─────────────────── v1.3.0
Installed MappedArrays ──────────────── v0.2.2
Installed Roots ─────────────────────── v0.8.3
Installed TreeViews ─────────────────── v0.3.0
Installed ColorVectorSpace ──────────── v0.6.2
Installed RandomNumbers ─────────────── v1.3.0
Installed DataStructures ────────────── v0.17.6
Installed IterativeSolvers ──────────── v0.8.1
Installed RecipesBase ───────────────── v0.7.0
Installed DifferentialEquations ─────── v6.9.0
Installed ImageFiltering ────────────── v0.6.5
Installed ImageAxes ─────────────────── v0.6.1
Installed FixedPointNumbers ─────────── v0.5.3
Installed DiffEqJump ────────────────── v6.3.0
Installed LightGraphs ───────────────── v1.3.0
Installed Parsers ───────────────────── v0.3.10
Installed DiffEqDiffTools ───────────── v1.5.0
Installed FillArrays ────────────────── v0.8.2
Installed BandedMatrices ────────────── v0.14.2
Installed DiffRules ─────────────────── v0.1.0
Installed JSON ──────────────────────── v0.21.0
Installed Graphics ──────────────────── v0.4.0
Installed RecursiveFactorization ────── v0.1.0
Installed SparseDiffTools ───────────── v1.0.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed ImageMetadata ─────────────── v0.7.2
Installed Interpolations ────────────── v0.12.5
Installed ImageTransformations ──────── v0.8.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed ArrayInterface ────────────── v2.0.0
Installed Ratios ────────────────────── v0.3.1
Installed StaticArrays ──────────────── v0.12.1
Installed DiffEqFinancial ───────────── v2.2.1
Installed CustomUnitRanges ──────────── v0.2.0
Installed NaNMath ───────────────────── v0.3.3
Installed DiffResults ───────────────── v0.0.4
Installed MuladdMacro ───────────────── v0.2.1
Installed SimpleTraits ──────────────── v0.9.1
Installed PaddedViews ───────────────── v0.4.2
Installed IntervalSets ──────────────── v0.3.2
Installed FFTW ──────────────────────── v0.3.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed TiledIteration ────────────── v0.2.3
Installed ImageCore ─────────────────── v0.7.4
Installed MathOptInterface ──────────── v0.8.4
Installed DiffEqNoiseProcess ────────── v3.6.0
Installed PoissonRandom ─────────────── v0.4.0
Installed PyPlot ────────────────────── v2.8.2
Installed LinQuadOptInterface ───────── v0.6.0
Installed DelayDiffEq ───────────────── v5.18.0
Installed NLsolve ───────────────────── v4.2.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed Unitful ───────────────────── v0.18.0
Installed IndirectArrays ────────────── v0.5.0
Installed VersionParsing ────────────── v1.1.3
Installed SteadyStateDiffEq ─────────── v1.5.0
Installed Distances ─────────────────── v0.8.2
Installed DiffEqPhysics ─────────────── v3.3.0
Installed MacroTools ────────────────── v0.5.2
Installed ColorTypes ────────────────── v0.8.0
Installed StochasticDiffEq ──────────── v6.15.0
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed AxisArrays ────────────────── v0.3.3
Installed DiffEqCallbacks ───────────── v2.10.0
Installed FFTViews ──────────────────── v0.3.0
Installed SpecialFunctions ──────────── v0.8.0
Installed BoundaryValueDiffEq ───────── v2.3.0
Installed Rotations ─────────────────── v0.12.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Sundials ──────────────────── v3.8.1
Installed BinDeps ───────────────────── v0.8.10
Installed ProgressMeter ─────────────── v0.9.0
Installed FileIO ────────────────────── v1.1.0
Updating `~/.julia/environments/v1.2/Project.toml`
[c2d78dd2] + ReactionMechanismSimulator v0.1.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[79e6a3ab] + Adapt v1.0.0
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[aae01518] + BandedMatrices v0.14.2
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[764a87c0] + BoundaryValueDiffEq v2.3.0
[49dc2e85] + Calculus v0.5.1
[aafaddc9] + CatIndices v0.2.0
[e2554f3b] + Clp v0.6.2
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[c3611d14] + ColorVectorSpace v0.6.2
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[ed09eef8] + ComputationalResources v0.3.0
[8f4d0f93] + Conda v1.3.0
[187b0558] + ConstructionBase v1.0.0
[150eb455] + CoordinateTransformations v0.5.0
[dc8bdbbb] + CustomUnitRanges v0.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[bcd4f6db] + DelayDiffEq v5.18.0
[2b5f629d] + DiffEqBase v6.7.0
[459566f4] + DiffEqCallbacks v2.10.0
[01453d9d] + DiffEqDiffTools v1.5.0
[5a0ffddc] + DiffEqFinancial v2.2.1
[c894b116] + DiffEqJump v6.3.0
[77a26b50] + DiffEqNoiseProcess v3.6.0
[055956cb] + DiffEqPhysics v3.3.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[0c46a032] + DifferentialEquations v6.9.0
[c619ae07] + DimensionalPlotRecipes v1.0.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[d4d017d3] + ExponentialUtilities v1.5.1
[4f61f5a4] + FFTViews v0.3.0
[7a1cc6ca] + FFTW v0.3.0
[5789e2e9] + FileIO v1.1.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.5.3
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[01680d73] + GenericSVD v0.2.2
[a2bd30eb] + Graphics v0.4.0
[bbac6d45] + IdentityRanges v0.3.0
[2803e5a7] + ImageAxes v0.6.1
[a09fc81d] + ImageCore v0.7.4
[51556ac3] + ImageDistances v0.1.1
[6a3955dd] + ImageFiltering v0.6.5
[bc367c6b] + ImageMetadata v0.7.2
[787d08f9] + ImageMorphology v0.1.1
[4e3cecfd] + ImageShow v0.2.0
[02fcd773] + ImageTransformations v0.8.0
[916415d5] + Images v0.17.3
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[093fc24a] + LightGraphs v1.3.0
[f8899e07] + LinQuadOptInterface v0.6.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.2
[dbb5928d] + MappedArrays v0.2.2
[b8f27783] + MathOptInterface v0.8.4
[fdba3010] + MathProgBase v0.7.7
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[f9640e96] + MultiScaleArrays v1.5.0
[d41bc354] + NLSolversBase v7.5.0
[2774e3e8] + NLsolve v4.2.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[1dea7af3] + OrdinaryDiffEq v5.25.0
[5432bcbf] + PaddedViews v0.4.2
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[e409e4f3] + PoissonRandom v0.4.0
[92933f4c] + ProgressMeter v0.9.0
[438e738f] + PyCall v1.91.2
[d330b81b] + PyPlot v2.8.2
[e6cf234a] + RandomNumbers v1.3.0
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[c2d78dd2] + ReactionMechanismSimulator v0.1.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[ae5879a3] + ResettableStacks v1.0.0
[f2b01f46] + Roots v0.8.3
[6038ab10] + Rotations v0.12.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.0.0
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[9672c7b4] + SteadyStateDiffEq v1.5.0
[789caeaf] + StochasticDiffEq v6.15.0
[c3572dad] + Sundials v3.8.1
[3783bdb8] + TableTraits v1.0.0
[06e1c1a7] + TiledIteration v0.2.3
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[1986cc42] + Unitful v0.18.0
[81def892] + VersionParsing v1.1.3
[19fa3120] + VertexSafeGraphs v0.1.0
[efce3f68] + WoodburyMatrices v0.4.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building Clp ─────────────→ `~/.julia/packages/Clp/IBQzB/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/2okGQ/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Sundials ────────→ `~/.julia/packages/Sundials/MllUG/deps/build.log`
Testing ReactionMechanismSimulator
Status `/tmp/jl_fD20eW/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[aae01518] BandedMatrices v0.14.2
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[764a87c0] BoundaryValueDiffEq v2.3.0
[49dc2e85] Calculus v0.5.1
[aafaddc9] CatIndices v0.2.0
[e2554f3b] Clp v0.6.2
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[c3611d14] ColorVectorSpace v0.6.2
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[ed09eef8] ComputationalResources v0.3.0
[8f4d0f93] Conda v1.3.0
[187b0558] ConstructionBase v1.0.0
[150eb455] CoordinateTransformations v0.5.0
[dc8bdbbb] CustomUnitRanges v0.2.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[bcd4f6db] DelayDiffEq v5.18.0
[2b5f629d] DiffEqBase v6.7.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[5a0ffddc] DiffEqFinancial v2.2.1
[c894b116] DiffEqJump v6.3.0
[77a26b50] DiffEqNoiseProcess v3.6.0
[055956cb] DiffEqPhysics v3.3.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[0c46a032] DifferentialEquations v6.9.0
[c619ae07] DimensionalPlotRecipes v1.0.0
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.5.1
[4f61f5a4] FFTViews v0.3.0
[7a1cc6ca] FFTW v0.3.0
[5789e2e9] FileIO v1.1.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.5.3
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[01680d73] GenericSVD v0.2.2
[a2bd30eb] Graphics v0.4.0
[bbac6d45] IdentityRanges v0.3.0
[2803e5a7] ImageAxes v0.6.1
[a09fc81d] ImageCore v0.7.4
[51556ac3] ImageDistances v0.1.1
[6a3955dd] ImageFiltering v0.6.5
[bc367c6b] ImageMetadata v0.7.2
[787d08f9] ImageMorphology v0.1.1
[4e3cecfd] ImageShow v0.2.0
[02fcd773] ImageTransformations v0.8.0
[916415d5] Images v0.17.3
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[093fc24a] LightGraphs v1.3.0
[f8899e07] LinQuadOptInterface v0.6.0
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.2
[dbb5928d] MappedArrays v0.2.2
[b8f27783] MathOptInterface v0.8.4
[fdba3010] MathProgBase v0.7.7
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[f9640e96] MultiScaleArrays v1.5.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[77ba4419] NaNMath v0.3.3
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[5432bcbf] PaddedViews v0.4.2
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[e409e4f3] PoissonRandom v0.4.0
[92933f4c] ProgressMeter v0.9.0
[438e738f] PyCall v1.91.2
[d330b81b] PyPlot v2.8.2
[e6cf234a] RandomNumbers v1.3.0
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[c2d78dd2] ReactionMechanismSimulator v0.1.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[ae5879a3] ResettableStacks v1.0.0
[f2b01f46] Roots v0.8.3
[6038ab10] Rotations v0.12.0
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[789caeaf] StochasticDiffEq v6.15.0
[c3572dad] Sundials v3.8.1
[3783bdb8] TableTraits v1.0.0
[06e1c1a7] TiledIteration v0.2.3
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[1986cc42] Unitful v0.18.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[efce3f68] WoodburyMatrices v0.4.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: LoadError: LoadError: PyError (PyImport_ImportModule
The Python package rdkit.Chem could not be found by pyimport. Usually this means
that you did not install rdkit.Chem in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the rdkit.Chem module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the rdkit.Chem module, you can use `pyimport_conda("rdkit.Chem", PKG)`,
where PKG is the Anaconda package the contains the module rdkit.Chem,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'rdkit'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/rmstest.jl:5
[4] include at ./boot.jl:328 [inlined]
[5] include_relative(::Module, ::String) at ./loading.jl:1094
[6] include(::Module, ::String) at ./Base.jl:31
[7] include(::String) at ./client.jl:431
[8] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/RunTests.jl:1
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1094
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:431
[13] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/test/runtests.jl:2
[14] include at ./boot.jl:328 [inlined]
[15] include_relative(::Module, ::String) at ./loading.jl:1094
[16] include(::Module, ::String) at ./Base.jl:31
[17] include(::String) at ./client.jl:431
[18] top-level scope at none:5
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/rmstest.jl:5
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/RunTests.jl:1
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/test/runtests.jl:2
ERROR: Package ReactionMechanismSimulator errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 5 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed URIParser ─────────────────── v0.4.0
Installed Ratios ────────────────────── v0.3.1
Installed PaddedViews ───────────────── v0.4.2
Installed CoordinateTransformations ─── v0.5.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed ImageTransformations ──────── v0.8.0
Installed ReactionMechanismSimulator ── v0.1.0
Installed Sundials ──────────────────── v3.8.1
Installed YAML ──────────────────────── v0.3.2
Installed CatIndices ────────────────── v0.2.0
Installed DiffResults ───────────────── v0.0.4
Installed Clp ───────────────────────── v0.6.2
Installed ExponentialUtilities ──────── v1.5.1
Installed DataStructures ────────────── v0.17.6
Installed FFTViews ──────────────────── v0.3.0
Installed Unitful ───────────────────── v0.18.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed Rotations ─────────────────── v0.12.0
Installed NLsolve ───────────────────── v4.2.0
Installed Roots ─────────────────────── v0.8.3
Installed StaticArrays ──────────────── v0.12.1
Installed LineSearches ──────────────── v7.0.1
Installed FFTW ──────────────────────── v0.3.0
Installed FileIO ────────────────────── v1.1.0
Installed DocStringExtensions ───────── v0.8.1
Installed Compat ────────────────────── v2.2.0
Installed BinaryProvider ────────────── v0.5.8
Installed FunctionWrappers ──────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed ProgressMeter ─────────────── v0.9.0
Installed Parsers ───────────────────── v0.3.10
Installed BoundaryValueDiffEq ───────── v2.3.0
Installed Missings ──────────────────── v0.4.3
Installed IterTools ─────────────────── v1.3.0
Installed MacroTools ────────────────── v0.5.2
Installed ImageDistances ────────────── v0.1.1
Installed TiledIteration ────────────── v0.2.3
Installed TreeViews ─────────────────── v0.3.0
Installed StochasticDiffEq ──────────── v6.15.0
Installed ImageFiltering ────────────── v0.6.5
Installed TableTraits ───────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed RangeArrays ───────────────── v0.3.1
Installed PyCall ────────────────────── v1.91.2
Installed IntervalSets ──────────────── v0.3.2
Installed OrderedCollections ────────── v1.1.0
Installed Images ────────────────────── v0.17.3
Installed FixedPointNumbers ─────────── v0.5.3
Installed IndirectArrays ────────────── v0.5.0
Installed SpecialFunctions ──────────── v0.8.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed ConstructionBase ──────────── v1.0.0
Installed MathOptInterface ──────────── v0.8.4
Installed BinDeps ───────────────────── v0.8.10
Installed CommonSubexpressions ──────── v0.2.0
Installed ColorTypes ────────────────── v0.8.0
Installed Interpolations ────────────── v0.12.5
Installed RecipesBase ───────────────── v0.7.0
Installed DifferentialEquations ─────── v6.9.0
Installed JSON ──────────────────────── v0.21.0
Installed LightGraphs ───────────────── v1.3.0
Installed DataAPI ───────────────────── v1.1.0
Installed Distances ─────────────────── v0.8.2
Installed LinQuadOptInterface ───────── v0.6.0
Installed Codecs ────────────────────── v0.5.0
Installed GenericSVD ────────────────── v0.2.2
Installed ImageCore ─────────────────── v0.7.4
Installed NaNMath ───────────────────── v0.3.3
Installed ForwardDiff ───────────────── v0.10.7
Installed ComputationalResources ────── v0.3.0
Installed Adapt ─────────────────────── v1.0.0
Installed ImageShow ─────────────────── v0.2.0
Installed PyPlot ────────────────────── v2.8.2
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffEqFinancial ───────────── v2.2.1
Installed Colors ────────────────────── v0.9.6
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed SparseDiffTools ───────────── v1.0.0
Installed ImageMetadata ─────────────── v0.7.2
Installed DiffRules ─────────────────── v0.1.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed PoissonRandom ─────────────── v0.4.0
Installed Calculus ──────────────────── v0.5.1
Installed MathProgBase ──────────────── v0.7.7
Installed ArnoldiMethod ─────────────── v0.0.4
Installed ArrayInterface ────────────── v2.0.0
Installed Conda ─────────────────────── v1.3.0
Installed ColorVectorSpace ──────────── v0.6.2
Installed Graphics ──────────────────── v0.4.0
Installed DiffEqBase ────────────────── v6.7.0
Installed Inflate ───────────────────── v0.1.1
Installed SteadyStateDiffEq ─────────── v1.5.0
Installed VersionParsing ────────────── v1.1.3
Installed ResettableStacks ──────────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed DimensionalPlotRecipes ────── v1.0.0
Installed DiffEqNoiseProcess ────────── v3.6.0
Installed DiffEqJump ────────────────── v6.3.0
Installed MuladdMacro ───────────────── v0.2.1
Installed DelayDiffEq ───────────────── v5.18.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed BandedMatrices ────────────── v0.14.2
Installed SimpleTraits ──────────────── v0.9.1
Installed ImageAxes ─────────────────── v0.6.1
Installed MappedArrays ──────────────── v0.2.2
Installed RecursiveArrayTools ───────── v1.2.0
Installed CustomUnitRanges ──────────── v0.2.0
Installed ImageMorphology ───────────── v0.1.1
Installed RandomNumbers ─────────────── v1.3.0
Installed RecursiveFactorization ────── v0.1.0
Installed VertexSafeGraphs ──────────── v0.1.0
Installed DiffEqPhysics ─────────────── v3.3.0
Installed OffsetArrays ──────────────── v0.11.2
Installed FillArrays ────────────────── v0.8.2
Installed AxisArrays ────────────────── v0.3.3
Installed Reexport ──────────────────── v0.2.0
Installed IterativeSolvers ──────────── v0.8.1
Installed IdentityRanges ────────────── v0.3.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed AbstractFFTs ──────────────── v0.4.1
Installed StatsBase ─────────────────── v0.32.0
Installed MultiScaleArrays ──────────── v1.5.0
Installed DiffEqCallbacks ───────────── v2.10.0
Updating `~/.julia/environments/v1.3/Project.toml`
[c2d78dd2] + ReactionMechanismSimulator v0.1.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[79e6a3ab] + Adapt v1.0.0
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[aae01518] + BandedMatrices v0.14.2
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[764a87c0] + BoundaryValueDiffEq v2.3.0
[49dc2e85] + Calculus v0.5.1
[aafaddc9] + CatIndices v0.2.0
[e2554f3b] + Clp v0.6.2
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[c3611d14] + ColorVectorSpace v0.6.2
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[ed09eef8] + ComputationalResources v0.3.0
[8f4d0f93] + Conda v1.3.0
[187b0558] + ConstructionBase v1.0.0
[150eb455] + CoordinateTransformations v0.5.0
[dc8bdbbb] + CustomUnitRanges v0.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[bcd4f6db] + DelayDiffEq v5.18.0
[2b5f629d] + DiffEqBase v6.7.0
[459566f4] + DiffEqCallbacks v2.10.0
[01453d9d] + DiffEqDiffTools v1.5.0
[5a0ffddc] + DiffEqFinancial v2.2.1
[c894b116] + DiffEqJump v6.3.0
[77a26b50] + DiffEqNoiseProcess v3.6.0
[055956cb] + DiffEqPhysics v3.3.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[0c46a032] + DifferentialEquations v6.9.0
[c619ae07] + DimensionalPlotRecipes v1.0.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[d4d017d3] + ExponentialUtilities v1.5.1
[4f61f5a4] + FFTViews v0.3.0
[7a1cc6ca] + FFTW v0.3.0
[5789e2e9] + FileIO v1.1.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.5.3
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[01680d73] + GenericSVD v0.2.2
[a2bd30eb] + Graphics v0.4.0
[bbac6d45] + IdentityRanges v0.3.0
[2803e5a7] + ImageAxes v0.6.1
[a09fc81d] + ImageCore v0.7.4
[51556ac3] + ImageDistances v0.1.1
[6a3955dd] + ImageFiltering v0.6.5
[bc367c6b] + ImageMetadata v0.7.2
[787d08f9] + ImageMorphology v0.1.1
[4e3cecfd] + ImageShow v0.2.0
[02fcd773] + ImageTransformations v0.8.0
[916415d5] + Images v0.17.3
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[093fc24a] + LightGraphs v1.3.0
[f8899e07] + LinQuadOptInterface v0.6.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.2
[dbb5928d] + MappedArrays v0.2.2
[b8f27783] + MathOptInterface v0.8.4
[fdba3010] + MathProgBase v0.7.7
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[f9640e96] + MultiScaleArrays v1.5.0
[d41bc354] + NLSolversBase v7.5.0
[2774e3e8] + NLsolve v4.2.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[1dea7af3] + OrdinaryDiffEq v5.25.0
[5432bcbf] + PaddedViews v0.4.2
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[e409e4f3] + PoissonRandom v0.4.0
[92933f4c] + ProgressMeter v0.9.0
[438e738f] + PyCall v1.91.2
[d330b81b] + PyPlot v2.8.2
[e6cf234a] + RandomNumbers v1.3.0
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[c2d78dd2] + ReactionMechanismSimulator v0.1.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[ae5879a3] + ResettableStacks v1.0.0
[f2b01f46] + Roots v0.8.3
[6038ab10] + Rotations v0.12.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.0.0
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[9672c7b4] + SteadyStateDiffEq v1.5.0
[789caeaf] + StochasticDiffEq v6.15.0
[c3572dad] + Sundials v3.8.1
[3783bdb8] + TableTraits v1.0.0
[06e1c1a7] + TiledIteration v0.2.3
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[1986cc42] + Unitful v0.18.0
[81def892] + VersionParsing v1.1.3
[19fa3120] + VertexSafeGraphs v0.1.0
[efce3f68] + WoodburyMatrices v0.4.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Sundials ────────→ `~/.julia/packages/Sundials/MllUG/deps/build.log`
Building Clp ─────────────→ `~/.julia/packages/Clp/IBQzB/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/2okGQ/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing ReactionMechanismSimulator
Status `/tmp/jl_ePT1V1/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[aae01518] BandedMatrices v0.14.2
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[764a87c0] BoundaryValueDiffEq v2.3.0
[49dc2e85] Calculus v0.5.1
[aafaddc9] CatIndices v0.2.0
[e2554f3b] Clp v0.6.2
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[c3611d14] ColorVectorSpace v0.6.2
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[ed09eef8] ComputationalResources v0.3.0
[8f4d0f93] Conda v1.3.0
[187b0558] ConstructionBase v1.0.0
[150eb455] CoordinateTransformations v0.5.0
[dc8bdbbb] CustomUnitRanges v0.2.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[bcd4f6db] DelayDiffEq v5.18.0
[2b5f629d] DiffEqBase v6.7.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[5a0ffddc] DiffEqFinancial v2.2.1
[c894b116] DiffEqJump v6.3.0
[77a26b50] DiffEqNoiseProcess v3.6.0
[055956cb] DiffEqPhysics v3.3.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[0c46a032] DifferentialEquations v6.9.0
[c619ae07] DimensionalPlotRecipes v1.0.0
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.5.1
[4f61f5a4] FFTViews v0.3.0
[7a1cc6ca] FFTW v0.3.0
[5789e2e9] FileIO v1.1.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.5.3
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[01680d73] GenericSVD v0.2.2
[a2bd30eb] Graphics v0.4.0
[bbac6d45] IdentityRanges v0.3.0
[2803e5a7] ImageAxes v0.6.1
[a09fc81d] ImageCore v0.7.4
[51556ac3] ImageDistances v0.1.1
[6a3955dd] ImageFiltering v0.6.5
[bc367c6b] ImageMetadata v0.7.2
[787d08f9] ImageMorphology v0.1.1
[4e3cecfd] ImageShow v0.2.0
[02fcd773] ImageTransformations v0.8.0
[916415d5] Images v0.17.3
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[093fc24a] LightGraphs v1.3.0
[f8899e07] LinQuadOptInterface v0.6.0
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.2
[dbb5928d] MappedArrays v0.2.2
[b8f27783] MathOptInterface v0.8.4
[fdba3010] MathProgBase v0.7.7
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[f9640e96] MultiScaleArrays v1.5.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[77ba4419] NaNMath v0.3.3
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[5432bcbf] PaddedViews v0.4.2
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[e409e4f3] PoissonRandom v0.4.0
[92933f4c] ProgressMeter v0.9.0
[438e738f] PyCall v1.91.2
[d330b81b] PyPlot v2.8.2
[e6cf234a] RandomNumbers v1.3.0
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[c2d78dd2] ReactionMechanismSimulator v0.1.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[ae5879a3] ResettableStacks v1.0.0
[f2b01f46] Roots v0.8.3
[6038ab10] Rotations v0.12.0
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[789caeaf] StochasticDiffEq v6.15.0
[c3572dad] Sundials v3.8.1
[3783bdb8] TableTraits v1.0.0
[06e1c1a7] TiledIteration v0.2.3
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[1986cc42] Unitful v0.18.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[efce3f68] WoodburyMatrices v0.4.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: LoadError: LoadError: PyError (PyImport_ImportModule
The Python package rdkit.Chem could not be found by pyimport. Usually this means
that you did not install rdkit.Chem in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the rdkit.Chem module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the rdkit.Chem module, you can use `pyimport_conda("rdkit.Chem", PKG)`,
where PKG is the Anaconda package the contains the module rdkit.Chem,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'rdkit'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/rmstest.jl:5
[4] include at ./boot.jl:328 [inlined]
[5] include_relative(::Module, ::String) at ./loading.jl:1105
[6] include(::Module, ::String) at ./Base.jl:31
[7] include(::String) at ./client.jl:424
[8] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/RunTests.jl:1
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/test/runtests.jl:2
[14] include at ./boot.jl:328 [inlined]
[15] include_relative(::Module, ::String) at ./loading.jl:1105
[16] include(::Module, ::String) at ./Base.jl:31
[17] include(::String) at ./client.jl:424
[18] top-level scope at none:6
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/rmstest.jl:5
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/RunTests.jl:1
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/test/runtests.jl:2
ERROR: Package ReactionMechanismSimulator errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 7 seconds.
Click here to download the log file.
Click here to show the log contents.
Installed Ratios ────────────────────── v0.3.1
Installed BoundaryValueDiffEq ───────── v2.3.0
Installed ColorTypes ────────────────── v0.8.0
Installed Conda ─────────────────────── v1.3.0
Installed ConstructionBase ──────────── v1.0.0
Installed ReactionMechanismSimulator ── v0.1.0
Installed Colors ────────────────────── v0.9.6
Installed LightGraphs ───────────────── v1.3.0
Installed Adapt ─────────────────────── v1.0.0
Installed CoordinateTransformations ─── v0.5.0
Installed PyCall ────────────────────── v1.91.2
Installed Clp ───────────────────────── v0.6.2
Installed Graphics ──────────────────── v0.4.0
Installed IndirectArrays ────────────── v0.5.0
Installed Unitful ───────────────────── v0.18.0
Installed DataStructures ────────────── v0.17.6
Installed FunctionWrappers ──────────── v1.0.0
Installed TiledIteration ────────────── v0.2.3
Installed ArrayLayouts ──────────────── v0.1.5
Installed SparseDiffTools ───────────── v1.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed IterativeSolvers ──────────── v0.8.1
Installed DifferentialEquations ─────── v6.9.0
Installed ImageDistances ────────────── v0.1.1
Installed ImageShow ─────────────────── v0.2.0
Installed SpecialFunctions ──────────── v0.8.0
Installed DiffEqPhysics ─────────────── v3.3.0
Installed IdentityRanges ────────────── v0.3.0
Installed StochasticDiffEq ──────────── v6.15.0
Installed Compat ────────────────────── v2.2.0
Installed ImageCore ─────────────────── v0.7.4
Installed BandedMatrices ────────────── v0.14.2
Installed BinDeps ───────────────────── v0.8.10
Installed StaticArrays ──────────────── v0.12.1
Installed MappedArrays ──────────────── v0.2.2
Installed IterTools ─────────────────── v1.3.0
Installed ResettableStacks ──────────── v1.0.0
Installed Roots ─────────────────────── v0.8.3
Installed MacroTools ────────────────── v0.5.2
Installed LaTeXStrings ──────────────── v1.0.3
Installed MultiScaleArrays ──────────── v1.5.0
Installed FixedPointNumbers ─────────── v0.5.3
Installed Inflate ───────────────────── v0.1.1
Installed DiffResults ───────────────── v0.0.4
Installed StatsBase ─────────────────── v0.32.0
Installed FillArrays ────────────────── v0.8.2
Installed AxisAlgorithms ────────────── v1.0.0
Installed OffsetArrays ──────────────── v0.11.2
Installed ForwardDiff ───────────────── v0.10.7
Installed LineSearches ──────────────── v7.0.1
Installed FileIO ────────────────────── v1.1.0
Installed Calculus ──────────────────── v0.5.1
Installed DimensionalPlotRecipes ────── v1.0.0
Installed ExponentialUtilities ──────── v1.5.1
Installed URIParser ─────────────────── v0.4.0
Installed CustomUnitRanges ──────────── v0.2.0
Installed FFTW ──────────────────────── v0.3.0
Installed AxisArrays ────────────────── v0.3.3
Installed TableTraits ───────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed CommonSubexpressions ──────── v0.2.0
Installed ComputationalResources ────── v0.3.0
Installed YAML ──────────────────────── v0.3.2
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed FFTViews ──────────────────── v0.3.0
Installed DelayDiffEq ───────────────── v5.18.0
Installed Sundials ──────────────────── v3.8.1
Installed LinQuadOptInterface ───────── v0.6.0
Installed DiffEqFinancial ───────────── v2.2.1
Installed SteadyStateDiffEq ─────────── v1.5.0
Installed ImageFiltering ────────────── v0.6.5
Installed BinaryProvider ────────────── v0.5.8
Installed DocStringExtensions ───────── v0.8.1
Installed MuladdMacro ───────────────── v0.2.1
Installed ProgressMeter ─────────────── v0.9.0
Installed Rotations ─────────────────── v0.12.0
Installed Parameters ────────────────── v0.12.0
Installed MathOptInterface ──────────── v0.8.4
Installed Interpolations ────────────── v0.12.5
Installed DiffEqCallbacks ───────────── v2.10.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Codecs ────────────────────── v0.5.0
Installed IntervalSets ──────────────── v0.3.2
Installed DiffRules ─────────────────── v0.1.0
Installed PoissonRandom ─────────────── v0.4.0
Installed CatIndices ────────────────── v0.2.0
Installed PyPlot ────────────────────── v2.8.2
Installed Requires ──────────────────── v0.5.2
Installed AbstractFFTs ──────────────── v0.4.1
Installed Distances ─────────────────── v0.8.2
Installed ArrayInterface ────────────── v2.0.0
Installed Images ────────────────────── v0.17.3
Installed PaddedViews ───────────────── v0.4.2
Installed SimpleTraits ──────────────── v0.9.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed ColorVectorSpace ──────────── v0.6.2
Installed GenericSVD ────────────────── v0.2.2
Installed MathProgBase ──────────────── v0.7.7
Installed RecursiveFactorization ────── v0.1.0
Installed Reexport ──────────────────── v0.2.0
Installed RangeArrays ───────────────── v0.3.1
Installed RecipesBase ───────────────── v0.7.0
Installed DiffEqBase ────────────────── v6.7.0
Installed ImageMetadata ─────────────── v0.7.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed VertexSafeGraphs ──────────── v0.1.0
Installed DiffEqJump ────────────────── v6.3.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed DataAPI ───────────────────── v1.1.0
Installed ImageAxes ─────────────────── v0.6.1
Installed JSON ──────────────────────── v0.21.0
Installed RandomNumbers ─────────────── v1.3.0
Installed ImageMorphology ───────────── v0.1.1
Installed OrderedCollections ────────── v1.1.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Parsers ───────────────────── v0.3.10
Installed TreeViews ─────────────────── v0.3.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed VersionParsing ────────────── v1.1.3
Installed ImageTransformations ──────── v0.8.0
Installed DiffEqNoiseProcess ────────── v3.6.0
Installed NLsolve ───────────────────── v4.2.0
Updating `~/.julia/environments/v1.3/Project.toml`
[c2d78dd2] + ReactionMechanismSimulator v0.1.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[79e6a3ab] + Adapt v1.0.0
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[aae01518] + BandedMatrices v0.14.2
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[764a87c0] + BoundaryValueDiffEq v2.3.0
[49dc2e85] + Calculus v0.5.1
[aafaddc9] + CatIndices v0.2.0
[e2554f3b] + Clp v0.6.2
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[c3611d14] + ColorVectorSpace v0.6.2
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[ed09eef8] + ComputationalResources v0.3.0
[8f4d0f93] + Conda v1.3.0
[187b0558] + ConstructionBase v1.0.0
[150eb455] + CoordinateTransformations v0.5.0
[dc8bdbbb] + CustomUnitRanges v0.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[bcd4f6db] + DelayDiffEq v5.18.0
[2b5f629d] + DiffEqBase v6.7.0
[459566f4] + DiffEqCallbacks v2.10.0
[01453d9d] + DiffEqDiffTools v1.5.0
[5a0ffddc] + DiffEqFinancial v2.2.1
[c894b116] + DiffEqJump v6.3.0
[77a26b50] + DiffEqNoiseProcess v3.6.0
[055956cb] + DiffEqPhysics v3.3.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[0c46a032] + DifferentialEquations v6.9.0
[c619ae07] + DimensionalPlotRecipes v1.0.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[d4d017d3] + ExponentialUtilities v1.5.1
[4f61f5a4] + FFTViews v0.3.0
[7a1cc6ca] + FFTW v0.3.0
[5789e2e9] + FileIO v1.1.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.5.3
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[01680d73] + GenericSVD v0.2.2
[a2bd30eb] + Graphics v0.4.0
[bbac6d45] + IdentityRanges v0.3.0
[2803e5a7] + ImageAxes v0.6.1
[a09fc81d] + ImageCore v0.7.4
[51556ac3] + ImageDistances v0.1.1
[6a3955dd] + ImageFiltering v0.6.5
[bc367c6b] + ImageMetadata v0.7.2
[787d08f9] + ImageMorphology v0.1.1
[4e3cecfd] + ImageShow v0.2.0
[02fcd773] + ImageTransformations v0.8.0
[916415d5] + Images v0.17.3
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[093fc24a] + LightGraphs v1.3.0
[f8899e07] + LinQuadOptInterface v0.6.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.2
[dbb5928d] + MappedArrays v0.2.2
[b8f27783] + MathOptInterface v0.8.4
[fdba3010] + MathProgBase v0.7.7
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[f9640e96] + MultiScaleArrays v1.5.0
[d41bc354] + NLSolversBase v7.5.0
[2774e3e8] + NLsolve v4.2.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[1dea7af3] + OrdinaryDiffEq v5.25.0
[5432bcbf] + PaddedViews v0.4.2
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[e409e4f3] + PoissonRandom v0.4.0
[92933f4c] + ProgressMeter v0.9.0
[438e738f] + PyCall v1.91.2
[d330b81b] + PyPlot v2.8.2
[e6cf234a] + RandomNumbers v1.3.0
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[c2d78dd2] + ReactionMechanismSimulator v0.1.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[ae5879a3] + ResettableStacks v1.0.0
[f2b01f46] + Roots v0.8.3
[6038ab10] + Rotations v0.12.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.0.0
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[9672c7b4] + SteadyStateDiffEq v1.5.0
[789caeaf] + StochasticDiffEq v6.15.0
[c3572dad] + Sundials v3.8.1
[3783bdb8] + TableTraits v1.0.0
[06e1c1a7] + TiledIteration v0.2.3
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[1986cc42] + Unitful v0.18.0
[81def892] + VersionParsing v1.1.3
[19fa3120] + VertexSafeGraphs v0.1.0
[efce3f68] + WoodburyMatrices v0.4.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building Clp ─────────────→ `~/.julia/packages/Clp/IBQzB/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/2okGQ/deps/build.log`
Building Sundials ────────→ `~/.julia/packages/Sundials/MllUG/deps/build.log`
Testing ReactionMechanismSimulator
Status `/tmp/jl_CTn4mp/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[aae01518] BandedMatrices v0.14.2
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[764a87c0] BoundaryValueDiffEq v2.3.0
[49dc2e85] Calculus v0.5.1
[aafaddc9] CatIndices v0.2.0
[e2554f3b] Clp v0.6.2
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[c3611d14] ColorVectorSpace v0.6.2
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[ed09eef8] ComputationalResources v0.3.0
[8f4d0f93] Conda v1.3.0
[187b0558] ConstructionBase v1.0.0
[150eb455] CoordinateTransformations v0.5.0
[dc8bdbbb] CustomUnitRanges v0.2.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[bcd4f6db] DelayDiffEq v5.18.0
[2b5f629d] DiffEqBase v6.7.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[5a0ffddc] DiffEqFinancial v2.2.1
[c894b116] DiffEqJump v6.3.0
[77a26b50] DiffEqNoiseProcess v3.6.0
[055956cb] DiffEqPhysics v3.3.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[0c46a032] DifferentialEquations v6.9.0
[c619ae07] DimensionalPlotRecipes v1.0.0
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.5.1
[4f61f5a4] FFTViews v0.3.0
[7a1cc6ca] FFTW v0.3.0
[5789e2e9] FileIO v1.1.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.5.3
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[01680d73] GenericSVD v0.2.2
[a2bd30eb] Graphics v0.4.0
[bbac6d45] IdentityRanges v0.3.0
[2803e5a7] ImageAxes v0.6.1
[a09fc81d] ImageCore v0.7.4
[51556ac3] ImageDistances v0.1.1
[6a3955dd] ImageFiltering v0.6.5
[bc367c6b] ImageMetadata v0.7.2
[787d08f9] ImageMorphology v0.1.1
[4e3cecfd] ImageShow v0.2.0
[02fcd773] ImageTransformations v0.8.0
[916415d5] Images v0.17.3
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.0.3
[093fc24a] LightGraphs v1.3.0
[f8899e07] LinQuadOptInterface v0.6.0
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.2
[dbb5928d] MappedArrays v0.2.2
[b8f27783] MathOptInterface v0.8.4
[fdba3010] MathProgBase v0.7.7
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[f9640e96] MultiScaleArrays v1.5.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[77ba4419] NaNMath v0.3.3
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[5432bcbf] PaddedViews v0.4.2
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[e409e4f3] PoissonRandom v0.4.0
[92933f4c] ProgressMeter v0.9.0
[438e738f] PyCall v1.91.2
[d330b81b] PyPlot v2.8.2
[e6cf234a] RandomNumbers v1.3.0
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[c2d78dd2] ReactionMechanismSimulator v0.1.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[ae5879a3] ResettableStacks v1.0.0
[f2b01f46] Roots v0.8.3
[6038ab10] Rotations v0.12.0
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[789caeaf] StochasticDiffEq v6.15.0
[c3572dad] Sundials v3.8.1
[3783bdb8] TableTraits v1.0.0
[06e1c1a7] TiledIteration v0.2.3
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[1986cc42] Unitful v0.18.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[efce3f68] WoodburyMatrices v0.4.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: LoadError: LoadError: PyError (PyImport_ImportModule
The Python package rdkit.Chem could not be found by pyimport. Usually this means
that you did not install rdkit.Chem in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the rdkit.Chem module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the rdkit.Chem module, you can use `pyimport_conda("rdkit.Chem", PKG)`,
where PKG is the Anaconda package the contains the module rdkit.Chem,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'rdkit'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/rmstest.jl:5
[4] include at ./boot.jl:328 [inlined]
[5] include_relative(::Module, ::String) at ./loading.jl:1105
[6] include(::Module, ::String) at ./Base.jl:31
[7] include(::String) at ./client.jl:424
[8] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/RunTests.jl:1
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/test/runtests.jl:2
[14] include at ./boot.jl:328 [inlined]
[15] include_relative(::Module, ::String) at ./loading.jl:1105
[16] include(::Module, ::String) at ./Base.jl:31
[17] include(::String) at ./client.jl:424
[18] top-level scope at none:6
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/rmstest.jl:5
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/src/RunTests.jl:1
in expression starting at /root/.julia/packages/ReactionMechanismSimulator/2Y0hL/test/runtests.jl:2
ERROR: Package ReactionMechanismSimulator errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10