If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful: testing failed for unknown reasons.
Last evaluation was ago and took 3 minutes, 11 seconds.
Resolving package versions...
Installed PyDSTool ──────────────────── v0.5.0
Installed Requires ──────────────────── v0.5.2
Installed Conda ─────────────────────── v1.3.0
Installed Compat ────────────────────── v2.2.0
Installed TableTraits ───────────────── v1.0.0
Installed PyCall ────────────────────── v1.91.2
Installed DocStringExtensions ───────── v0.8.1
Installed DiffEqBase ────────────────── v5.20.1
Installed FunctionWrappers ──────────── v1.0.0
Installed RecipesBase ───────────────── v0.7.0
Installed Parsers ───────────────────── v0.3.10
Installed OrderedCollections ────────── v1.1.0
Installed TreeViews ─────────────────── v0.3.0
Installed DataStructures ────────────── v0.17.6
Installed Roots ─────────────────────── v0.8.3
Installed IterativeSolvers ──────────── v0.8.1
Installed RecursiveFactorization ────── v0.1.0
Installed JSON ──────────────────────── v0.21.0
Installed Parameters ────────────────── v0.12.0
Installed StaticArrays ──────────────── v0.12.1
Installed ArrayInterface ────────────── v1.2.1
Installed MuladdMacro ───────────────── v0.2.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed VersionParsing ────────────── v1.1.3
Installed MacroTools ────────────────── v0.5.2
Updating `~/.julia/environments/v1.2/Project.toml`
[7186c646] + PyDSTool v0.5.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[4fba245c] + ArrayInterface v1.2.1
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.6
[2b5f629d] + DiffEqBase v5.20.1
[ffbed154] + DocStringExtensions v0.8.1
[069b7b12] + FunctionWrappers v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[46d2c3a1] + MuladdMacro v0.2.1
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[438e738f] + PyCall v1.91.2
[7186c646] + PyDSTool v0.5.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[a2a6695c] + TreeViews v0.3.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Testing PyDSTool
Resolving package versions...
Installed URIParser ────────────── v0.4.0
Installed ParameterizedFunctions ─ v4.2.1
Installed SymEngine ────────────── v0.7.0
Installed SpecialFunctions ─────── v0.8.0
Installed BinDeps ──────────────── v0.8.10
Installed BinaryProvider ───────── v0.5.8
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building SymEngine ───────→ `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Status `/tmp/jl_Xwaq0S/Manifest.toml`
[4fba245c] ArrayInterface v1.2.1
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[864edb3b] DataStructures v0.17.6
[2b5f629d] DiffEqBase v5.20.1
[ffbed154] DocStringExtensions v0.8.1
[069b7b12] FunctionWrappers v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.2
[46d2c3a1] MuladdMacro v0.2.1
[bac558e1] OrderedCollections v1.1.0
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[438e738f] PyCall v1.91.2
[7186c646] PyDSTool v0.5.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: `getindex(o::PyObject, s::AbstractString)` is deprecated in favor of dot overloading (`getproperty`) so elements should now be accessed as e.g. `o."s"` instead of `o["s"]`.
│ caller = __init__() at PyDSTool.jl:23
└ @ PyDSTool ~/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:23
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package _pydstool_jl_hack could not be found by pyimport. Usually this means
that you did not install _pydstool_jl_hack in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the _pydstool_jl_hack module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the _pydstool_jl_hack module, you can use `pyimport_conda("_pydstool_jl_hack", PKG)`,
where PKG is the Anaconda package the contains the module _pydstool_jl_hack,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
File "/root/.julia/packages/PyDSTool/nreJ8/src/_pydstool_jl_hack.py", line 1, in <module>
import scipy.special
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] __init__() at /root/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:24
[3] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:685
[4] _require_from_serialized(::String) at ./loading.jl:736
[5] _require(::Base.PkgId) at ./loading.jl:1023
[6] require(::Base.PkgId) at ./loading.jl:911
[7] require(::Module, ::Symbol) at ./loading.jl:906
[8] include at ./boot.jl:328 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1094
[10] include(::Module, ::String) at ./Base.jl:31
[11] include(::String) at ./client.jl:431
[12] top-level scope at none:5
during initialization of module PyDSTool
in expression starting at /root/.julia/packages/PyDSTool/nreJ8/test/runtests.jl:1
caused by [exception 1]
PyError (PyImport_ImportModule
The Python package PyDSTool could not be found by pyimport. Usually this means
that you did not install PyDSTool in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the PyDSTool module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the PyDSTool module, you can use `pyimport_conda("PyDSTool", PKG)`,
where PKG is the Anaconda package the contains the module PyDSTool,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'PyDSTool'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] __init__() at /root/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:11
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:685
[5] _require_from_serialized(::String) at ./loading.jl:736
[6] _require(::Base.PkgId) at ./loading.jl:1023
[7] require(::Base.PkgId) at ./loading.jl:911
[8] require(::Module, ::Symbol) at ./loading.jl:906
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1094
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:431
[13] top-level scope at none:5
ERROR: Package PyDSTool errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful: testing failed for unknown reasons.
Last evaluation was ago and took 3 minutes, 10 seconds.
Resolving package versions...
Installed PyDSTool ──────────────────── v0.5.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed Roots ─────────────────────── v0.8.3
Installed Compat ────────────────────── v2.2.0
Installed DataStructures ────────────── v0.17.6
Installed StaticArrays ──────────────── v0.12.1
Installed DocStringExtensions ───────── v0.8.1
Installed MacroTools ────────────────── v0.5.2
Installed TreeViews ─────────────────── v0.3.0
Installed OrderedCollections ────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed Parameters ────────────────── v0.12.0
Installed RecipesBase ───────────────── v0.7.0
Installed PyCall ────────────────────── v1.91.2
Installed TableTraits ───────────────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed VersionParsing ────────────── v1.1.3
Installed ArrayInterface ────────────── v1.2.1
Installed Conda ─────────────────────── v1.3.0
Installed MuladdMacro ───────────────── v0.2.1
Installed DiffEqBase ────────────────── v5.20.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed RecursiveFactorization ────── v0.1.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed IterativeSolvers ──────────── v0.8.1
Updating `~/.julia/environments/v1.3/Project.toml`
[7186c646] + PyDSTool v0.5.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[4fba245c] + ArrayInterface v1.2.1
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.6
[2b5f629d] + DiffEqBase v5.20.1
[ffbed154] + DocStringExtensions v0.8.1
[069b7b12] + FunctionWrappers v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[46d2c3a1] + MuladdMacro v0.2.1
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[438e738f] + PyCall v1.91.2
[7186c646] + PyDSTool v0.5.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[a2a6695c] + TreeViews v0.3.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Testing PyDSTool
Resolving package versions...
Installed OpenSpecFun_jll ──────── v0.5.3+1
Installed BinaryProvider ───────── v0.5.8
Installed ParameterizedFunctions ─ v4.2.1
Installed SymEngine ────────────── v0.7.0
Installed SpecialFunctions ─────── v0.9.0
Building SymEngine → `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Status `/tmp/jl_tm30Lh/Manifest.toml`
[4fba245c] ArrayInterface v1.2.1
[b99e7846] BinaryProvider v0.5.8
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[864edb3b] DataStructures v0.17.6
[2b5f629d] DiffEqBase v5.20.1
[ffbed154] DocStringExtensions v0.8.1
[069b7b12] FunctionWrappers v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.2
[46d2c3a1] MuladdMacro v0.2.1
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[438e738f] PyCall v1.91.2
[7186c646] PyDSTool v0.5.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[a2a6695c] TreeViews v0.3.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: `getindex(o::PyObject, s::AbstractString)` is deprecated in favor of dot overloading (`getproperty`) so elements should now be accessed as e.g. `o."s"` instead of `o["s"]`.
│ caller = __init__() at PyDSTool.jl:23
└ @ PyDSTool ~/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:23
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package _pydstool_jl_hack could not be found by pyimport. Usually this means
that you did not install _pydstool_jl_hack in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the _pydstool_jl_hack module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the _pydstool_jl_hack module, you can use `pyimport_conda("_pydstool_jl_hack", PKG)`,
where PKG is the Anaconda package the contains the module _pydstool_jl_hack,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
File "/root/.julia/packages/PyDSTool/nreJ8/src/_pydstool_jl_hack.py", line 1, in <module>
import scipy.special
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] __init__() at /root/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:24
[3] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[4] _require_from_serialized(::String) at ./loading.jl:743
[5] _require(::Base.PkgId) at ./loading.jl:1034
[6] require(::Base.PkgId) at ./loading.jl:922
[7] require(::Module, ::Symbol) at ./loading.jl:917
[8] include at ./boot.jl:328 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1105
[10] include(::Module, ::String) at ./Base.jl:31
[11] include(::String) at ./client.jl:424
[12] top-level scope at none:6
during initialization of module PyDSTool
in expression starting at /root/.julia/packages/PyDSTool/nreJ8/test/runtests.jl:1
caused by [exception 1]
PyError (PyImport_ImportModule
The Python package PyDSTool could not be found by pyimport. Usually this means
that you did not install PyDSTool in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the PyDSTool module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the PyDSTool module, you can use `pyimport_conda("PyDSTool", PKG)`,
where PKG is the Anaconda package the contains the module PyDSTool,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'PyDSTool'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] __init__() at /root/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:11
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[5] _require_from_serialized(::String) at ./loading.jl:743
[6] _require(::Base.PkgId) at ./loading.jl:1034
[7] require(::Base.PkgId) at ./loading.jl:922
[8] require(::Module, ::Symbol) at ./loading.jl:917
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at none:6
ERROR: Package PyDSTool errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful: testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 52 seconds.
Resolving package versions...
Installed PyDSTool ──────────────────── v0.5.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Conda ─────────────────────── v1.3.0
Installed Compat ────────────────────── v2.2.0
Installed PyCall ────────────────────── v1.91.2
Installed DataStructures ────────────── v0.17.6
Installed StaticArrays ──────────────── v0.12.1
Installed IterativeSolvers ──────────── v0.8.1
Installed DocStringExtensions ───────── v0.8.1
Installed Roots ─────────────────────── v0.8.3
Installed MuladdMacro ───────────────── v0.2.1
Installed TableTraits ───────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed ArrayInterface ────────────── v1.2.1
Installed Requires ──────────────────── v0.5.2
Installed MacroTools ────────────────── v0.5.2
Installed RecursiveFactorization ────── v0.1.0
Installed RecipesBase ───────────────── v0.7.0
Installed OrderedCollections ────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed DiffEqBase ────────────────── v5.20.1
Installed Parsers ───────────────────── v0.3.10
Installed RecursiveArrayTools ───────── v1.2.0
Installed TreeViews ─────────────────── v0.3.0
Installed VersionParsing ────────────── v1.1.3
Updating `~/.julia/environments/v1.3/Project.toml`
[7186c646] + PyDSTool v0.5.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[4fba245c] + ArrayInterface v1.2.1
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.6
[2b5f629d] + DiffEqBase v5.20.1
[ffbed154] + DocStringExtensions v0.8.1
[069b7b12] + FunctionWrappers v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[46d2c3a1] + MuladdMacro v0.2.1
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[438e738f] + PyCall v1.91.2
[7186c646] + PyDSTool v0.5.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[a2a6695c] + TreeViews v0.3.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Testing PyDSTool
Resolving package versions...
Installed BinaryProvider ───────── v0.5.8
Installed OpenSpecFun_jll ──────── v0.5.3+1
Installed SymEngine ────────────── v0.7.0
Installed ParameterizedFunctions ─ v4.2.1
Installed SpecialFunctions ─────── v0.9.0
Building SymEngine → `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Status `/tmp/jl_Ck8xDw/Manifest.toml`
[4fba245c] ArrayInterface v1.2.1
[b99e7846] BinaryProvider v0.5.8
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[864edb3b] DataStructures v0.17.6
[2b5f629d] DiffEqBase v5.20.1
[ffbed154] DocStringExtensions v0.8.1
[069b7b12] FunctionWrappers v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.2
[46d2c3a1] MuladdMacro v0.2.1
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[438e738f] PyCall v1.91.2
[7186c646] PyDSTool v0.5.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[a2a6695c] TreeViews v0.3.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
┌ Warning: `getindex(o::PyObject, s::AbstractString)` is deprecated in favor of dot overloading (`getproperty`) so elements should now be accessed as e.g. `o."s"` instead of `o["s"]`.
│ caller = __init__() at PyDSTool.jl:23
└ @ PyDSTool ~/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:23
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package _pydstool_jl_hack could not be found by pyimport. Usually this means
that you did not install _pydstool_jl_hack in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the _pydstool_jl_hack module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the _pydstool_jl_hack module, you can use `pyimport_conda("_pydstool_jl_hack", PKG)`,
where PKG is the Anaconda package the contains the module _pydstool_jl_hack,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
File "/root/.julia/packages/PyDSTool/nreJ8/src/_pydstool_jl_hack.py", line 1, in <module>
import scipy.special
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] __init__() at /root/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:24
[3] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[4] _require_from_serialized(::String) at ./loading.jl:743
[5] _require(::Base.PkgId) at ./loading.jl:1034
[6] require(::Base.PkgId) at ./loading.jl:922
[7] require(::Module, ::Symbol) at ./loading.jl:917
[8] include at ./boot.jl:328 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1105
[10] include(::Module, ::String) at ./Base.jl:31
[11] include(::String) at ./client.jl:424
[12] top-level scope at none:6
during initialization of module PyDSTool
in expression starting at /root/.julia/packages/PyDSTool/nreJ8/test/runtests.jl:1
caused by [exception 1]
PyError (PyImport_ImportModule
The Python package PyDSTool could not be found by pyimport. Usually this means
that you did not install PyDSTool in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the PyDSTool module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the PyDSTool module, you can use `pyimport_conda("PyDSTool", PKG)`,
where PKG is the Anaconda package the contains the module PyDSTool,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'PyDSTool'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] __init__() at /root/.julia/packages/PyDSTool/nreJ8/src/PyDSTool.jl:11
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[5] _require_from_serialized(::String) at ./loading.jl:743
[6] _require(::Base.PkgId) at ./loading.jl:1034
[7] require(::Base.PkgId) at ./loading.jl:922
[8] require(::Module, ::Symbol) at ./loading.jl:917
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at none:6
ERROR: Package PyDSTool errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10