If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 3 minutes.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed YAML ──────────────────────── v0.3.2
Installed DataAPI ───────────────────── v1.1.0
Installed Showoff ───────────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed PhyloPlots ────────────────── v0.2.1
Installed IntervalTrees ─────────────── v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed DataFrames ────────────────── v0.19.4
Installed Contour ───────────────────── v0.5.1
Installed AbstractFFTs ──────────────── v0.5.0
Installed PDMats ────────────────────── v0.9.10
Installed LineSearches ──────────────── v7.0.1
Installed BinaryProvider ────────────── v0.5.8
Installed CoupledFields ─────────────── v0.1.0
Installed IndexableBitVectors ───────── v1.0.0
Installed CommonSubexpressions ──────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed Colors ────────────────────── v0.9.6
Installed Codecs ────────────────────── v0.5.0
Installed Measures ──────────────────── v0.3.0
Installed StatsFuns ─────────────────── v0.9.0
Installed Conda ─────────────────────── v1.3.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed BioCore ───────────────────── v2.0.5
Installed Polynomials ───────────────── v0.6.0
Installed URIParser ─────────────────── v0.4.0
Installed DataValueInterfaces ───────── v1.0.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed NLSolversBase ─────────────── v7.5.0
Installed DocStringExtensions ───────── v0.8.1
Installed Compose ───────────────────── v0.7.3
Installed Requires ──────────────────── v0.5.2
Installed InvertedIndices ───────────── v1.0.0
Installed WinReg ────────────────────── v0.3.1
Installed Twiddle ───────────────────── v1.1.1
Installed Reexport ──────────────────── v0.2.0
Installed BioSymbols ────────────────── v3.1.0
Installed Compat ────────────────────── v2.2.0
Installed OffsetArrays ──────────────── v0.11.2
Installed ForwardDiff ───────────────── v0.10.7
Installed MathProgBase ──────────────── v0.7.7
Installed Automa ────────────────────── v0.8.0
Installed Rmath ─────────────────────── v0.5.1
Installed IterTools ─────────────────── v1.3.0
Installed Tables ────────────────────── v0.2.11
Installed FilePathsBase ─────────────── v0.7.0
Installed GLM ───────────────────────── v1.3.4
Installed OrderedCollections ────────── v1.1.0
Installed Calculus ──────────────────── v0.5.1
Installed KernelDensity ─────────────── v0.5.1
Installed Gadfly ────────────────────── v1.0.1
Installed Loess ─────────────────────── v0.5.0
Installed Combinatorics ─────────────── v0.7.0
Installed RecipesBase ───────────────── v0.7.0
Installed DataStructures ────────────── v0.17.6
Installed Distributions ─────────────── v0.21.9
Installed WeakRefStrings ────────────── v0.6.1
Installed FixedPointNumbers ─────────── v0.6.1
Installed ShiftedArrays ─────────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed DiffEqDiffTools ───────────── v1.5.0
Installed FillArrays ────────────────── v0.8.2
Installed TranscodingStreams ────────── v0.9.5
Installed StatsModels ───────────────── v0.6.7
Installed Media ─────────────────────── v0.5.0
Installed Ratios ────────────────────── v0.3.1
Installed DiffRules ─────────────────── v0.1.0
Installed ArrayInterface ────────────── v2.0.0
Installed NLopt ─────────────────────── v0.5.1
Installed JSON ──────────────────────── v0.21.0
Installed NaNMath ───────────────────── v0.3.3
Installed DiffResults ───────────────── v0.0.4
Installed StaticArrays ──────────────── v0.12.1
Installed Interpolations ────────────── v0.12.5
Installed FFTW ──────────────────────── v1.1.0
Installed Parameters ────────────────── v0.12.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Hexagons ──────────────────── v0.2.0
Installed Juno ──────────────────────── v0.7.2
Installed CategoricalArrays ─────────── v0.7.3
Installed BioSequences ──────────────── v1.1.0
Installed BufferedStreams ───────────── v1.0.0
Installed CMake ─────────────────────── v1.1.2
Installed WoodburyMatrices ──────────── v0.4.1
Installed QuadGK ────────────────────── v2.1.1
Installed RCall ─────────────────────── v0.13.4
Installed SortingAlgorithms ─────────── v0.3.1
Installed IndirectArrays ────────────── v0.5.0
Installed CMakeWrapper ──────────────── v0.2.3
Installed VersionParsing ────────────── v1.1.3
Installed LazyArrays ────────────────── v0.14.10
Installed Distances ─────────────────── v0.8.2
Installed PositiveFactorizations ────── v0.2.3
Installed MacroTools ────────────────── v0.5.2
Installed ColorTypes ────────────────── v0.8.0
Installed SpecialFunctions ──────────── v0.8.0
Installed BinDeps ───────────────────── v0.8.10
Installed Arpack ────────────────────── v0.3.1
Installed Optim ─────────────────────── v0.19.5
Installed PhyloNetworks ─────────────── v0.11.0
Updating `~/.julia/environments/v1.2/Project.toml`
[c0d5b6db] + PhyloPlots v0.2.1
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[67c07d97] + Automa v0.8.0
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v0.7.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[38e38edf] + GLM v1.3.4
[c91e804a] + Gadfly v1.0.1
[a1b4810d] + Hexagons v0.2.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[9b13fd28] + IndirectArrays v0.5.0
[a98d9a8b] + Interpolations v0.12.5
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[1914dd2f] + MacroTools v0.5.2
[fdba3010] + MathProgBase v0.7.7
[442fdcdd] + Measures v0.3.0
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[76087f3c] + NLopt v0.5.1
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[33ad39ac] + PhyloNetworks v0.11.0
[c0d5b6db] + PhyloPlots v0.2.1
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[6f49c342] + RCall v0.13.4
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[1277b4bf] + ShiftedArrays v1.0.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3eaba693] + StatsModels v0.6.7
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[1b915085] + WinReg v0.3.1
[efce3f68] + WoodburyMatrices v0.4.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building CMake ───────────→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Building NLopt ───────────→ `~/.julia/packages/NLopt/eqN9a/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building RCall ───────────→ `~/.julia/packages/RCall/g7dhB/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
┌ Error: Error building `RCall`:
│ ERROR: LoadError: R_HOME is not a directory.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] top-level scope at /root/.julia/packages/RCall/g7dhB/deps/build.jl:44
│ [3] include at ./boot.jl:328 [inlined]
│ [4] include_relative(::Module, ::String) at ./loading.jl:1094
│ [5] include(::Module, ::String) at ./Base.jl:31
│ [6] include(::String) at ./client.jl:431
│ [7] top-level scope at none:5
│ in expression starting at /root/.julia/packages/RCall/g7dhB/deps/build.jl:10
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/backwards_compatible_isolation.jl:647
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing PhyloPlots
Resolving package versions...
Status `/tmp/jl_vNPlMK/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[67c07d97] Automa v0.8.0
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[631607c0] CMake v1.1.2
[d5fb7624] CMakeWrapper v0.2.3
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v0.7.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[38e38edf] GLM v1.3.4
[c91e804a] Gadfly v1.0.1
[a1b4810d] Hexagons v0.2.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[9b13fd28] IndirectArrays v0.5.0
[a98d9a8b] Interpolations v0.12.5
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[1914dd2f] MacroTools v0.5.2
[fdba3010] MathProgBase v0.7.7
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[76087f3c] NLopt v0.5.1
[77ba4419] NaNMath v0.3.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[33ad39ac] PhyloNetworks v0.11.0
[c0d5b6db] PhyloPlots v0.2.1
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[6f49c342] RCall v0.13.4
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[1277b4bf] ShiftedArrays v1.0.0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[1b915085] WinReg v0.3.1
[efce3f68] WoodburyMatrices v0.4.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: RCall not properly installed. Please run Pkg.build("RCall")
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] top-level scope at /root/.julia/packages/RCall/g7dhB/src/RCall.jl:36
[3] include at ./boot.jl:328 [inlined]
[4] include_relative(::Module, ::String) at ./loading.jl:1094
[5] include(::Module, ::String) at ./Base.jl:31
[6] top-level scope at none:2
[7] eval at ./boot.jl:330 [inlined]
[8] eval(::Expr) at ./client.jl:432
[9] top-level scope at ./none:3
in expression starting at /root/.julia/packages/RCall/g7dhB/src/RCall.jl:33
ERROR: LoadError: Failed to precompile RCall [6f49c342-dc21-5d91-9882-a32aef131414] to /root/.julia/compiled/v1.2/RCall/8GFyb.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1253
[3] _require(::Base.PkgId) at ./loading.jl:1013
[4] require(::Base.PkgId) at ./loading.jl:911
[5] require(::Module, ::Symbol) at ./loading.jl:906
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1094
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:431
[10] top-level scope at none:5
in expression starting at /root/.julia/packages/PhyloPlots/aMMN1/test/runtests.jl:1
ERROR: Package PhyloPlots errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 56 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed KernelDensity ─────────────── v0.5.1
Installed URIParser ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed DiffResults ───────────────── v0.0.4
Installed Arpack ────────────────────── v0.3.1
Installed PhyloPlots ────────────────── v0.2.1
Installed BufferedStreams ───────────── v1.0.0
Installed LazyArrays ────────────────── v0.14.10
Installed AxisAlgorithms ────────────── v1.0.0
Installed Juno ──────────────────────── v0.7.2
Installed DataStructures ────────────── v0.17.6
Installed YAML ──────────────────────── v0.3.2
Installed LineSearches ──────────────── v7.0.1
Installed FFTW ──────────────────────── v1.1.0
Installed StaticArrays ──────────────── v0.12.1
Installed StatsFuns ─────────────────── v0.9.0
Installed Compose ───────────────────── v0.7.3
Installed QuadGK ────────────────────── v2.1.1
Installed CategoricalArrays ─────────── v0.7.3
Installed DocStringExtensions ───────── v0.8.1
Installed Compat ────────────────────── v2.2.0
Installed BinaryProvider ────────────── v0.5.8
Installed InvertedIndices ───────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed NLSolversBase ─────────────── v7.5.0
Installed WinReg ────────────────────── v0.3.1
Installed IterTools ─────────────────── v1.3.0
Installed Hexagons ──────────────────── v0.2.0
Installed Missings ──────────────────── v0.4.3
Installed Distributions ─────────────── v0.21.9
Installed MacroTools ────────────────── v0.5.2
Installed Combinatorics ─────────────── v0.7.0
Installed Rmath ─────────────────────── v0.5.1
Installed IndexableBitVectors ───────── v1.0.0
Installed Loess ─────────────────────── v0.5.0
Installed CMakeWrapper ──────────────── v0.2.3
Installed NLopt ─────────────────────── v0.5.1
Installed Parameters ────────────────── v0.12.0
Installed TableTraits ───────────────── v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed FixedPointNumbers ─────────── v0.6.1
Installed IndirectArrays ────────────── v0.5.0
Installed PositiveFactorizations ────── v0.2.3
Installed SpecialFunctions ──────────── v0.8.0
Installed OrderedCollections ────────── v1.1.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed Showoff ───────────────────── v0.3.1
Installed BioSequences ──────────────── v1.1.0
Installed CommonSubexpressions ──────── v0.2.0
Installed JSON ──────────────────────── v0.21.0
Installed BinDeps ───────────────────── v0.8.10
Installed ColorTypes ────────────────── v0.8.0
Installed RecipesBase ───────────────── v0.7.0
Installed Gadfly ────────────────────── v1.0.1
Installed Interpolations ────────────── v0.12.5
Installed Distances ─────────────────── v0.8.2
Installed RCall ─────────────────────── v0.13.4
Installed DataAPI ───────────────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed Codecs ────────────────────── v0.5.0
Installed ShiftedArrays ─────────────── v1.0.0
Installed Polynomials ───────────────── v0.6.0
Installed Automa ────────────────────── v0.8.0
Installed NaNMath ───────────────────── v0.3.3
Installed ForwardDiff ───────────────── v0.10.7
Installed DataValueInterfaces ───────── v1.0.0
Installed PhyloNetworks ─────────────── v0.11.0
Installed Optim ─────────────────────── v0.19.5
Installed CMake ─────────────────────── v1.1.2
Installed DiffEqDiffTools ───────────── v1.5.0
Installed IntervalTrees ─────────────── v1.0.0
Installed StatsModels ───────────────── v0.6.7
Installed Colors ────────────────────── v0.9.6
Installed Calculus ──────────────────── v0.5.1
Installed DiffRules ─────────────────── v0.1.0
Installed Conda ─────────────────────── v1.3.0
Installed ArrayInterface ────────────── v2.0.0
Installed FilePathsBase ─────────────── v0.7.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed GLM ───────────────────────── v1.3.4
Installed MathProgBase ──────────────── v0.7.7
Installed Measures ──────────────────── v0.3.0
Installed VersionParsing ────────────── v1.1.3
Installed Contour ───────────────────── v0.5.1
Installed Requires ──────────────────── v0.5.2
Installed PooledArrays ──────────────── v0.5.2
Installed Twiddle ───────────────────── v1.1.1
Installed Media ─────────────────────── v0.5.0
Installed OffsetArrays ──────────────── v0.11.2
Installed FillArrays ────────────────── v0.8.2
Installed WeakRefStrings ────────────── v0.6.1
Installed TranscodingStreams ────────── v0.9.5
Installed DataFrames ────────────────── v0.19.4
Installed WoodburyMatrices ──────────── v0.4.1
Installed Reexport ──────────────────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed PDMats ────────────────────── v0.9.10
Installed AbstractFFTs ──────────────── v0.5.0
Installed CoupledFields ─────────────── v0.1.0
Installed BioSymbols ────────────────── v3.1.0
Installed BioCore ───────────────────── v2.0.5
Updating `~/.julia/environments/v1.3/Project.toml`
[c0d5b6db] + PhyloPlots v0.2.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[67c07d97] + Automa v0.8.0
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v0.7.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[38e38edf] + GLM v1.3.4
[c91e804a] + Gadfly v1.0.1
[a1b4810d] + Hexagons v0.2.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[9b13fd28] + IndirectArrays v0.5.0
[a98d9a8b] + Interpolations v0.12.5
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[1914dd2f] + MacroTools v0.5.2
[fdba3010] + MathProgBase v0.7.7
[442fdcdd] + Measures v0.3.0
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[76087f3c] + NLopt v0.5.1
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[33ad39ac] + PhyloNetworks v0.11.0
[c0d5b6db] + PhyloPlots v0.2.1
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[6f49c342] + RCall v0.13.4
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[1277b4bf] + ShiftedArrays v1.0.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3eaba693] + StatsModels v0.6.7
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[1b915085] + WinReg v0.3.1
[efce3f68] + WoodburyMatrices v0.4.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building CMake ───────────→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Building NLopt ───────────→ `~/.julia/packages/NLopt/eqN9a/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building RCall ───────────→ `~/.julia/packages/RCall/g7dhB/deps/build.log`
┌ Error: Error building `RCall`:
│ ERROR: LoadError: R_HOME is not a directory.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] top-level scope at /root/.julia/packages/RCall/g7dhB/deps/build.jl:44
│ [3] include at ./boot.jl:328 [inlined]
│ [4] include_relative(::Module, ::String) at ./loading.jl:1105
│ [5] include(::Module, ::String) at ./Base.jl:31
│ [6] include(::String) at ./client.jl:424
│ [7] top-level scope at none:5
│ in expression starting at /root/.julia/packages/RCall/g7dhB/deps/build.jl:10
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/backwards_compatible_isolation.jl:649
Testing PhyloPlots
Resolving package versions...
Status `/tmp/jl_uSKZjC/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[67c07d97] Automa v0.8.0
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[631607c0] CMake v1.1.2
[d5fb7624] CMakeWrapper v0.2.3
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v0.7.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[38e38edf] GLM v1.3.4
[c91e804a] Gadfly v1.0.1
[a1b4810d] Hexagons v0.2.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[9b13fd28] IndirectArrays v0.5.0
[a98d9a8b] Interpolations v0.12.5
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[1914dd2f] MacroTools v0.5.2
[fdba3010] MathProgBase v0.7.7
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[76087f3c] NLopt v0.5.1
[77ba4419] NaNMath v0.3.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[33ad39ac] PhyloNetworks v0.11.0
[c0d5b6db] PhyloPlots v0.2.1
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[6f49c342] RCall v0.13.4
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[1277b4bf] ShiftedArrays v1.0.0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[1b915085] WinReg v0.3.1
[efce3f68] WoodburyMatrices v0.4.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: RCall not properly installed. Please run Pkg.build("RCall")
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] top-level scope at /root/.julia/packages/RCall/g7dhB/src/RCall.jl:36
[3] include at ./boot.jl:328 [inlined]
[4] include_relative(::Module, ::String) at ./loading.jl:1105
[5] include(::Module, ::String) at ./Base.jl:31
[6] top-level scope at none:2
[7] eval at ./boot.jl:330 [inlined]
[8] eval(::Expr) at ./client.jl:425
[9] top-level scope at ./none:3
in expression starting at /root/.julia/packages/RCall/g7dhB/src/RCall.jl:33
ERROR: LoadError: Failed to precompile RCall [6f49c342-dc21-5d91-9882-a32aef131414] to /root/.julia/compiled/v1.3/RCall/8GFyb_kKbud.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:424
[10] top-level scope at none:6
in expression starting at /root/.julia/packages/PhyloPlots/aMMN1/test/runtests.jl:1
ERROR: Package PhyloPlots errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 52 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed IndirectArrays ────────────── v0.5.0
Installed ColorTypes ────────────────── v0.8.0
Installed Conda ─────────────────────── v1.3.0
Installed PhyloPlots ────────────────── v0.2.1
Installed Colors ────────────────────── v0.9.6
Installed Gadfly ────────────────────── v1.0.1
Installed Optim ─────────────────────── v0.19.5
Installed QuadGK ────────────────────── v2.1.1
Installed CMake ─────────────────────── v1.1.2
Installed Automa ────────────────────── v0.8.0
Installed DataStructures ────────────── v0.17.6
Installed ArrayLayouts ──────────────── v0.1.5
Installed WeakRefStrings ────────────── v0.6.1
Installed Hexagons ──────────────────── v0.2.0
Installed BioCore ───────────────────── v2.0.5
Installed NaNMath ───────────────────── v0.3.3
Installed Tables ────────────────────── v0.2.11
Installed Compose ───────────────────── v0.7.3
Installed SpecialFunctions ──────────── v0.8.0
Installed LazyArrays ────────────────── v0.14.10
Installed NLopt ─────────────────────── v0.5.1
Installed StatsModels ───────────────── v0.6.7
Installed IntervalTrees ─────────────── v1.0.0
Installed DataFrames ────────────────── v0.19.4
Installed Polynomials ───────────────── v0.6.0
Installed DiffResults ───────────────── v0.0.4
Installed StaticArrays ──────────────── v0.12.1
Installed Compat ────────────────────── v2.2.0
Installed RCall ─────────────────────── v0.13.4
Installed BinDeps ───────────────────── v0.8.10
Installed IterTools ─────────────────── v1.3.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed Showoff ───────────────────── v0.3.1
Installed MacroTools ────────────────── v0.5.2
Installed StatsBase ─────────────────── v0.32.0
Installed ForwardDiff ───────────────── v0.10.7
Installed BioSymbols ────────────────── v3.1.0
Installed FillArrays ────────────────── v0.8.2
Installed AxisAlgorithms ────────────── v1.0.0
Installed OffsetArrays ──────────────── v0.11.2
Installed Calculus ──────────────────── v0.5.1
Installed LineSearches ──────────────── v7.0.1
Installed BufferedStreams ───────────── v1.0.0
Installed CMakeWrapper ──────────────── v0.2.3
Installed Arpack ────────────────────── v0.3.1
Installed URIParser ─────────────────── v0.4.0
Installed Missings ──────────────────── v0.4.3
Installed FFTW ──────────────────────── v1.1.0
Installed TableTraits ───────────────── v1.0.0
Installed ShiftedArrays ─────────────── v1.0.0
Installed YAML ──────────────────────── v0.3.2
Installed StatsFuns ─────────────────── v0.9.0
Installed PooledArrays ──────────────── v0.5.2
Installed CommonSubexpressions ──────── v0.2.0
Installed BinaryProvider ────────────── v0.5.8
Installed FilePathsBase ─────────────── v0.7.0
Installed DocStringExtensions ───────── v0.8.1
Installed GLM ───────────────────────── v1.3.4
Installed TranscodingStreams ────────── v0.9.5
Installed Media ─────────────────────── v0.5.0
Installed Interpolations ────────────── v0.12.5
Installed WinReg ────────────────────── v0.3.1
Installed Parameters ────────────────── v0.12.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Rmath ─────────────────────── v0.5.1
Installed Twiddle ───────────────────── v1.1.1
Installed DiffRules ─────────────────── v0.1.0
Installed Measures ──────────────────── v0.3.0
Installed Codecs ────────────────────── v0.5.0
Installed InvertedIndices ───────────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed AbstractFFTs ──────────────── v0.5.0
Installed Distances ─────────────────── v0.8.2
Installed ArrayInterface ────────────── v2.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed CoupledFields ─────────────── v0.1.0
Installed Combinatorics ─────────────── v0.7.0
Installed KernelDensity ─────────────── v0.5.1
Installed MathProgBase ──────────────── v0.7.7
Installed PhyloNetworks ─────────────── v0.11.0
Installed Distributions ─────────────── v0.21.9
Installed PositiveFactorizations ────── v0.2.3
Installed Reexport ──────────────────── v0.2.0
Installed Contour ───────────────────── v0.5.1
Installed WoodburyMatrices ──────────── v0.4.1
Installed RecipesBase ───────────────── v0.7.0
Installed DataAPI ───────────────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed CategoricalArrays ─────────── v0.7.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed OrderedCollections ────────── v1.1.0
Installed Parsers ───────────────────── v0.3.10
Installed BioSequences ──────────────── v1.1.0
Installed Loess ─────────────────────── v0.5.0
Installed PDMats ────────────────────── v0.9.10
Installed VersionParsing ────────────── v1.1.3
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Juno ──────────────────────── v0.7.2
Installed SortingAlgorithms ─────────── v0.3.1
Installed IndexableBitVectors ───────── v1.0.0
Updating `~/.julia/environments/v1.3/Project.toml`
[c0d5b6db] + PhyloPlots v0.2.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[67c07d97] + Automa v0.8.0
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v0.7.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[38e38edf] + GLM v1.3.4
[c91e804a] + Gadfly v1.0.1
[a1b4810d] + Hexagons v0.2.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[9b13fd28] + IndirectArrays v0.5.0
[a98d9a8b] + Interpolations v0.12.5
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[1914dd2f] + MacroTools v0.5.2
[fdba3010] + MathProgBase v0.7.7
[442fdcdd] + Measures v0.3.0
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[76087f3c] + NLopt v0.5.1
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[33ad39ac] + PhyloNetworks v0.11.0
[c0d5b6db] + PhyloPlots v0.2.1
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[6f49c342] + RCall v0.13.4
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[1277b4bf] + ShiftedArrays v1.0.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3eaba693] + StatsModels v0.6.7
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[1b915085] + WinReg v0.3.1
[efce3f68] + WoodburyMatrices v0.4.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building CMake ───────────→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Building NLopt ───────────→ `~/.julia/packages/NLopt/eqN9a/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building RCall ───────────→ `~/.julia/packages/RCall/g7dhB/deps/build.log`
┌ Error: Error building `RCall`:
│ ERROR: LoadError: R_HOME is not a directory.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] top-level scope at /root/.julia/packages/RCall/g7dhB/deps/build.jl:44
│ [3] include at ./boot.jl:328 [inlined]
│ [4] include_relative(::Module, ::String) at ./loading.jl:1105
│ [5] include(::Module, ::String) at ./Base.jl:31
│ [6] include(::String) at ./client.jl:424
│ [7] top-level scope at none:5
│ in expression starting at /root/.julia/packages/RCall/g7dhB/deps/build.jl:10
└ @ Pkg.Operations /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/backwards_compatible_isolation.jl:649
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing PhyloPlots
Resolving package versions...
Status `/tmp/jl_C2ddyn/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[67c07d97] Automa v0.8.0
[13072b0f] AxisAlgorithms v1.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[631607c0] CMake v1.1.2
[d5fb7624] CMakeWrapper v0.2.3
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v0.7.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[38e38edf] GLM v1.3.4
[c91e804a] Gadfly v1.0.1
[a1b4810d] Hexagons v0.2.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[9b13fd28] IndirectArrays v0.5.0
[a98d9a8b] Interpolations v0.12.5
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[1914dd2f] MacroTools v0.5.2
[fdba3010] MathProgBase v0.7.7
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[76087f3c] NLopt v0.5.1
[77ba4419] NaNMath v0.3.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[33ad39ac] PhyloNetworks v0.11.0
[c0d5b6db] PhyloPlots v0.2.1
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[6f49c342] RCall v0.13.4
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[1277b4bf] ShiftedArrays v1.0.0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[1b915085] WinReg v0.3.1
[efce3f68] WoodburyMatrices v0.4.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: RCall not properly installed. Please run Pkg.build("RCall")
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] top-level scope at /root/.julia/packages/RCall/g7dhB/src/RCall.jl:36
[3] include at ./boot.jl:328 [inlined]
[4] include_relative(::Module, ::String) at ./loading.jl:1105
[5] include(::Module, ::String) at ./Base.jl:31
[6] top-level scope at none:2
[7] eval at ./boot.jl:330 [inlined]
[8] eval(::Expr) at ./client.jl:425
[9] top-level scope at ./none:3
in expression starting at /root/.julia/packages/RCall/g7dhB/src/RCall.jl:33
ERROR: LoadError: Failed to precompile RCall [6f49c342-dc21-5d91-9882-a32aef131414] to /root/.julia/compiled/v1.3/RCall/8GFyb_1XKtn.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:424
[10] top-level scope at none:6
in expression starting at /root/.julia/packages/PhyloPlots/aMMN1/test/runtests.jl:1
ERROR: Package PhyloPlots errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10