If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 4 minutes, 16 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed PDMats ────────────────────── v0.9.10
Installed TableTraits ───────────────── v1.0.0
Installed Phylo ─────────────────────── v0.3.3
Installed BinaryProvider ────────────── v0.5.8
Installed StatsBase ─────────────────── v0.32.0
Installed DataFrames ────────────────── v0.19.4
Installed URIParser ─────────────────── v0.4.0
Installed Tokenize ──────────────────── v0.5.7
Installed InvertedIndices ───────────── v1.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed PooledArrays ──────────────── v0.5.2
Installed Requires ──────────────────── v0.5.2
Installed Compat ────────────────────── v2.2.0
Installed StatsFuns ─────────────────── v0.9.0
Installed Rmath ─────────────────────── v0.5.1
Installed OrderedCollections ────────── v1.1.0
Installed RecipesBase ───────────────── v0.7.0
Installed Tables ────────────────────── v0.2.11
Installed IterableTables ────────────── v1.0.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed Parsers ───────────────────── v0.3.10
Installed DataStructures ────────────── v0.17.6
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed DataValues ────────────────── v0.4.12
Installed CategoricalArrays ─────────── v0.7.3
Installed QuadGK ────────────────────── v2.1.1
Installed BinDeps ───────────────────── v0.8.10
Installed Distributions ─────────────── v0.21.9
Installed SpecialFunctions ──────────── v0.8.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Arpack ────────────────────── v0.3.1
Updating `~/.julia/environments/v1.2/Project.toml`
[aea672f4] + Phylo v0.3.3
Updating `~/.julia/environments/v1.2/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[31c24e10] + Distributions v0.21.9
[41ab1584] + InvertedIndices v1.0.0
[1c8ee90f] + IterableTables v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[aea672f4] + Phylo v0.3.3
[2dfb63ee] + PooledArrays v0.5.2
[1fd47b50] + QuadGK v2.1.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[0796e94c] + Tokenize v0.5.7
[30578b45] + URIParser v0.4.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing Phylo
Resolving package versions...
Installed VersionParsing ─ v1.1.3
Installed ShiftedArrays ── v1.0.0
Installed Conda ────────── v1.3.0
Installed WinReg ───────── v0.3.1
Installed RCall ────────── v0.13.4
Installed StatsModels ──── v0.6.7
Building Conda → `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building RCall → `~/.julia/packages/RCall/g7dhB/deps/build.log`
┌ Error: Error building `RCall`:
│ ERROR: LoadError: R_HOME is not a directory.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] top-level scope at /root/.julia/packages/RCall/g7dhB/deps/build.jl:44
│ [3] include at ./boot.jl:328 [inlined]
│ [4] include_relative(::Module, ::String) at ./loading.jl:1094
│ [5] include(::Module, ::String) at ./Base.jl:31
│ [6] include(::String) at ./client.jl:431
│ [7] top-level scope at none:5
│ in expression starting at /root/.julia/packages/RCall/g7dhB/deps/build.jl:10
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/backwards_compatible_isolation.jl:647
Status `/tmp/jl_LaxNrp/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[324d7699] CategoricalArrays v0.7.3
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[31c24e10] Distributions v0.21.9
[41ab1584] InvertedIndices v1.0.0
[1c8ee90f] IterableTables v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[69de0a69] Parsers v0.3.10
[aea672f4] Phylo v0.3.3
[2dfb63ee] PooledArrays v0.5.2
[1fd47b50] QuadGK v2.1.1
[6f49c342] RCall v0.13.4
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[1277b4bf] ShiftedArrays v1.0.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[0796e94c] Tokenize v0.5.7
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[1b915085] WinReg v0.3.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
[ Info: Running tests for files:
= Interface.jl
= Iterators.jl
= Tree.jl
= TreeSet.jl
= newick.jl
= rand.jl
= rcall.jl
= routes.jl
= show.jl
= trim.jl
Test Summary: | Pass Total
* Testing Interface.jl | 99 99
Test Summary: | Pass Total
* Testing Iterators.jl | 74 74
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:151
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
Test Summary: | Pass Total
* Testing Tree.jl | 49 49
Test Summary: | Pass Total
* Testing TreeSet.jl | 71 71
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE1'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE2'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:294 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:294
Test Summary: | Pass Total
* Testing newick.jl | 22 22
Nonultrametric(): Test Failed at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:11
Expression: eltype(nu) == NamedTree
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Dict{String,Any}}
Stacktrace:
[1] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:11
[2] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[3] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:10
Ultrametric(): Test Failed at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:49
Expression: eltype(ul) == BinaryTree{DataFrame, Vector{Float64}}
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Array{Float64,1}}
Stacktrace:
[1] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:49
[2] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[3] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:34
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
ERROR: LoadError: Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /root/.julia/packages/Phylo/g085o/test/runtests.jl:21
caused by [exception 1]
Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
ERROR: Package Phylo errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 4 minutes, 2 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed SortingAlgorithms ─────────── v0.3.1
Installed URIParser ─────────────────── v0.4.0
Installed Phylo ─────────────────────── v0.3.3
Installed Arpack ────────────────────── v0.3.1
Installed IterableTables ────────────── v1.0.0
Installed QuadGK ────────────────────── v2.1.1
Installed DataStructures ────────────── v0.17.6
Installed CategoricalArrays ─────────── v0.7.3
Installed Compat ────────────────────── v2.2.0
Installed StatsFuns ─────────────────── v0.9.0
Installed InvertedIndices ───────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed Parsers ───────────────────── v0.3.10
Installed Rmath ─────────────────────── v0.5.1
Installed BinaryProvider ────────────── v0.5.8
Installed TableTraits ───────────────── v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed Distributions ─────────────── v0.21.9
Installed BinDeps ───────────────────── v0.8.10
Installed SpecialFunctions ──────────── v0.8.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed RecipesBase ───────────────── v0.7.0
Installed JSON ──────────────────────── v0.21.0
Installed DataAPI ───────────────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed DataValues ────────────────── v0.4.12
Installed DataValueInterfaces ───────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PDMats ────────────────────── v0.9.10
Installed PooledArrays ──────────────── v0.5.2
Installed DataFrames ────────────────── v0.19.4
Installed StatsBase ─────────────────── v0.32.0
Installed Reexport ──────────────────── v0.2.0
Installed Tokenize ──────────────────── v0.5.7
Updating `~/.julia/environments/v1.3/Project.toml`
[aea672f4] + Phylo v0.3.3
Updating `~/.julia/environments/v1.3/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[31c24e10] + Distributions v0.21.9
[41ab1584] + InvertedIndices v1.0.0
[1c8ee90f] + IterableTables v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[aea672f4] + Phylo v0.3.3
[2dfb63ee] + PooledArrays v0.5.2
[1fd47b50] + QuadGK v2.1.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[0796e94c] + Tokenize v0.5.7
[30578b45] + URIParser v0.4.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing Phylo
Resolving package versions...
Installed VersionParsing ─ v1.1.3
Installed ShiftedArrays ── v1.0.0
Installed Conda ────────── v1.3.0
Installed RCall ────────── v0.13.4
Installed WinReg ───────── v0.3.1
Installed StatsModels ──── v0.6.7
Building Conda → `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building RCall → `~/.julia/packages/RCall/g7dhB/deps/build.log`
┌ Error: Error building `RCall`:
│ ERROR: LoadError: R_HOME is not a directory.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] top-level scope at /root/.julia/packages/RCall/g7dhB/deps/build.jl:44
│ [3] include at ./boot.jl:328 [inlined]
│ [4] include_relative(::Module, ::String) at ./loading.jl:1105
│ [5] include(::Module, ::String) at ./Base.jl:31
│ [6] include(::String) at ./client.jl:424
│ [7] top-level scope at none:5
│ in expression starting at /root/.julia/packages/RCall/g7dhB/deps/build.jl:10
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/backwards_compatible_isolation.jl:649
Status `/tmp/jl_40ZuGc/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[324d7699] CategoricalArrays v0.7.3
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[31c24e10] Distributions v0.21.9
[41ab1584] InvertedIndices v1.0.0
[1c8ee90f] IterableTables v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[69de0a69] Parsers v0.3.10
[aea672f4] Phylo v0.3.3
[2dfb63ee] PooledArrays v0.5.2
[1fd47b50] QuadGK v2.1.1
[6f49c342] RCall v0.13.4
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[1277b4bf] ShiftedArrays v1.0.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[0796e94c] Tokenize v0.5.7
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[1b915085] WinReg v0.3.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
[ Info: Running tests for files:
= Interface.jl
= Iterators.jl
= Tree.jl
= TreeSet.jl
= newick.jl
= rand.jl
= rcall.jl
= routes.jl
= show.jl
= trim.jl
Test Summary: | Pass Total
* Testing Interface.jl | 99 99
Test Summary: | Pass Total
* Testing Iterators.jl | 74 74
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:151
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
Test Summary: | Pass Total
* Testing Tree.jl | 49 49
Test Summary: | Pass Total
* Testing TreeSet.jl | 71 71
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE1'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE2'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:294 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:294
Test Summary: | Pass Total
* Testing newick.jl | 22 22
Nonultrametric(): Test Failed at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:11
Expression: eltype(nu) == NamedTree
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Dict{String,Any}}
Stacktrace:
[1] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:11
[2] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[3] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:10
Ultrametric(): Test Failed at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:49
Expression: eltype(ul) == BinaryTree{DataFrame, Vector{Float64}}
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Array{Float64,1}}
Stacktrace:
[1] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:49
[2] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[3] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:34
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
ERROR: LoadError: Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /root/.julia/packages/Phylo/g085o/test/runtests.jl:21
caused by [exception 1]
Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
ERROR: Package Phylo errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 4 minutes, 7 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Tables ────────────────────── v0.2.11
Installed Compat ────────────────────── v2.2.0
Installed Phylo ─────────────────────── v0.3.3
Installed QuadGK ────────────────────── v2.1.1
Installed DataStructures ────────────── v0.17.6
Installed SpecialFunctions ──────────── v0.8.0
Installed DataValues ────────────────── v0.4.12
Installed DataFrames ────────────────── v0.19.4
Installed BinDeps ───────────────────── v0.8.10
Installed TableTraits ───────────────── v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed Missings ──────────────────── v0.4.3
Installed Arpack ────────────────────── v0.3.1
Installed PooledArrays ──────────────── v0.5.2
Installed URIParser ─────────────────── v0.4.0
Installed StatsFuns ─────────────────── v0.9.0
Installed InvertedIndices ───────────── v1.0.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed Rmath ─────────────────────── v0.5.1
Installed Requires ──────────────────── v0.5.2
Installed Tokenize ──────────────────── v0.5.7
Installed BinaryProvider ────────────── v0.5.8
Installed IterableTables ────────────── v1.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed CategoricalArrays ─────────── v0.7.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Distributions ─────────────── v0.21.9
Installed JSON ──────────────────────── v0.21.0
Installed PDMats ────────────────────── v0.9.10
Installed RecipesBase ───────────────── v0.7.0
Installed DataAPI ───────────────────── v1.1.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Parsers ───────────────────── v0.3.10
Installed OrderedCollections ────────── v1.1.0
Updating `~/.julia/environments/v1.3/Project.toml`
[aea672f4] + Phylo v0.3.3
Updating `~/.julia/environments/v1.3/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[31c24e10] + Distributions v0.21.9
[41ab1584] + InvertedIndices v1.0.0
[1c8ee90f] + IterableTables v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[aea672f4] + Phylo v0.3.3
[2dfb63ee] + PooledArrays v0.5.2
[1fd47b50] + QuadGK v2.1.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[0796e94c] + Tokenize v0.5.7
[30578b45] + URIParser v0.4.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing Phylo
Resolving package versions...
Installed Conda ────────── v1.3.0
Installed WinReg ───────── v0.3.1
Installed ShiftedArrays ── v1.0.0
Installed VersionParsing ─ v1.1.3
Installed StatsModels ──── v0.6.7
Installed RCall ────────── v0.13.4
Building Conda → `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building RCall → `~/.julia/packages/RCall/g7dhB/deps/build.log`
┌ Error: Error building `RCall`:
│ ERROR: LoadError: R_HOME is not a directory.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] top-level scope at /root/.julia/packages/RCall/g7dhB/deps/build.jl:44
│ [3] include at ./boot.jl:328 [inlined]
│ [4] include_relative(::Module, ::String) at ./loading.jl:1105
│ [5] include(::Module, ::String) at ./Base.jl:31
│ [6] include(::String) at ./client.jl:424
│ [7] top-level scope at none:5
│ in expression starting at /root/.julia/packages/RCall/g7dhB/deps/build.jl:10
└ @ Pkg.Operations /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/backwards_compatible_isolation.jl:649
Status `/tmp/jl_VsePF0/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[324d7699] CategoricalArrays v0.7.3
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[31c24e10] Distributions v0.21.9
[41ab1584] InvertedIndices v1.0.0
[1c8ee90f] IterableTables v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[69de0a69] Parsers v0.3.10
[aea672f4] Phylo v0.3.3
[2dfb63ee] PooledArrays v0.5.2
[1fd47b50] QuadGK v2.1.1
[6f49c342] RCall v0.13.4
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[1277b4bf] ShiftedArrays v1.0.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3eaba693] StatsModels v0.6.7
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[0796e94c] Tokenize v0.5.7
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[1b915085] WinReg v0.3.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
[ Info: Running tests for files:
= Interface.jl
= Iterators.jl
= Tree.jl
= TreeSet.jl
= newick.jl
= rand.jl
= rcall.jl
= routes.jl
= show.jl
= trim.jl
Test Summary: | Pass Total
* Testing Interface.jl | 99 99
Test Summary: | Pass Total
* Testing Iterators.jl | 74 74
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:151
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
Test Summary: | Pass Total
* Testing Tree.jl | 49 49
Test Summary: | Pass Total
* Testing TreeSet.jl | 71 71
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE1'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE2'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:294 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:294
Test Summary: | Pass Total
* Testing newick.jl | 22 22
Nonultrametric(): Test Failed at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:11
Expression: eltype(nu) == NamedTree
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Dict{String,Any}}
Stacktrace:
[1] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:11
[2] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[3] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:10
Ultrametric(): Test Failed at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:49
Expression: eltype(ul) == BinaryTree{DataFrame, Vector{Float64}}
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Array{Float64,1}}
Stacktrace:
[1] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:49
[2] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[3] top-level scope at /root/.julia/packages/Phylo/g085o/test/test_rand.jl:34
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
ERROR: LoadError: Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /root/.julia/packages/Phylo/g085o/test/runtests.jl:21
caused by [exception 1]
Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
ERROR: Package Phylo errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10