Microbiome

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If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.

Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 2 minutes, 28 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed Missings ──────────────────── v0.4.3
 Installed DataAPI ───────────────────── v1.1.0
 Installed NearestNeighbors ──────────── v0.4.4
 Installed TableTraits ───────────────── v1.0.0
 Installed SpatialEcology ────────────── v0.4.3
 Installed Microbiome ────────────────── v0.4.0
 Installed StatsBase ─────────────────── v0.32.0
 Installed DataFrames ────────────────── v0.18.4
 Installed DataValueInterfaces ───────── v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed OrderedCollections ────────── v1.1.0
 Installed Tables ────────────────────── v0.2.11
 Installed Reexport ──────────────────── v0.2.0
 Installed Compat ────────────────────── v3.0.0
 Installed DataStructures ────────────── v0.17.6
 Installed RecipesBase ───────────────── v0.7.0
 Installed Parsers ───────────────────── v0.3.10
 Installed JSON ──────────────────────── v0.21.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed StaticArrays ──────────────── v0.12.1
 Installed CategoricalArrays ─────────── v0.7.3
 Installed Distances ─────────────────── v0.8.2
 Installed Clustering ────────────────── v0.13.3
  Updating `~/.julia/environments/v1.2/Project.toml`
  [3bd8f0ae] + Microbiome v0.4.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [324d7699] + CategoricalArrays v0.7.3
  [aaaa29a8] + Clustering v0.13.3
  [34da2185] + Compat v3.0.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.18.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.8.2
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [3bd8f0ae] + Microbiome v0.4.0
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.2
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [348f2d5d] + SpatialEcology v0.4.3
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Testing Microbiome
 Resolving package versions...
    Status `/tmp/jl_miylx9/Manifest.toml`
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [34da2185] Compat v3.0.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.18.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [3bd8f0ae] Microbiome v0.4.0
  [e1d29d7a] Missings v0.4.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.10
  [2dfb63ee] PooledArrays v0.5.2
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [a2af1166] SortingAlgorithms v0.3.1
  [348f2d5d] SpatialEcology v0.4.3
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
WARNING: Compat.Statistics is deprecated, use Statistics instead.
  likely near /root/.julia/packages/CategoricalArrays/U3LvJ/src/extras.jl:1
Test Summary: | Pass  Total
Abundances    |  158    158
┌ Warning: implicit `dims=2` argument now has to be passed explicitly to specify that distances between columns should be computed
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total
Distances     |  143    143
┌ Warning: `hclust(d, method::Symbol, uplo::Union{Symbol, Nothing}=nothing)` is deprecated, use `hclust(d, linkage=method, uplo=uplo)` instead.
│   caller = hclust(::Array{Float64,2}, ::Symbol) at deprecated.jl:66
└ @ Clustering ./deprecated.jl:66
┌ Warning: Hclust::merge is deprecated, use Hclust::merges
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total
Leaf Ordering |    2      2
   Testing Microbiome tests passed 

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 2 minutes, 37 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed Parsers ───────────────────── v0.3.10
 Installed Compat ────────────────────── v3.0.0
 Installed NearestNeighbors ──────────── v0.4.4
 Installed Microbiome ────────────────── v0.4.0
 Installed DataStructures ────────────── v0.17.6
 Installed StaticArrays ──────────────── v0.12.1
 Installed CategoricalArrays ─────────── v0.7.3
 Installed OrderedCollections ────────── v1.1.0
 Installed Missings ──────────────────── v0.4.3
 Installed TableTraits ───────────────── v1.0.0
 Installed JSON ──────────────────────── v0.21.0
 Installed DataAPI ───────────────────── v1.1.0
 Installed Tables ────────────────────── v0.2.11
 Installed RecipesBase ───────────────── v0.7.0
 Installed Distances ─────────────────── v0.8.2
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed DataValueInterfaces ───────── v1.0.0
 Installed Reexport ──────────────────── v0.2.0
 Installed SpatialEcology ────────────── v0.4.3
 Installed DataFrames ────────────────── v0.18.4
 Installed StatsBase ─────────────────── v0.32.0
 Installed Clustering ────────────────── v0.13.3
  Updating `~/.julia/environments/v1.3/Project.toml`
  [3bd8f0ae] + Microbiome v0.4.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [324d7699] + CategoricalArrays v0.7.3
  [aaaa29a8] + Clustering v0.13.3
  [34da2185] + Compat v3.0.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.18.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.8.2
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [3bd8f0ae] + Microbiome v0.4.0
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.2
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [348f2d5d] + SpatialEcology v0.4.3
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Testing Microbiome
 Resolving package versions...
    Status `/tmp/jl_xNTcb2/Manifest.toml`
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [34da2185] Compat v3.0.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.18.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [3bd8f0ae] Microbiome v0.4.0
  [e1d29d7a] Missings v0.4.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.10
  [2dfb63ee] PooledArrays v0.5.2
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [a2af1166] SortingAlgorithms v0.3.1
  [348f2d5d] SpatialEcology v0.4.3
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
WARNING: Compat.Statistics is deprecated, use Statistics instead.
  likely near /root/.julia/packages/CategoricalArrays/U3LvJ/src/extras.jl:1
Test Summary: | Pass  Total
Abundances    |  158    158
┌ Warning: implicit `dims=2` argument now has to be passed explicitly to specify that distances between columns should be computed
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total
Distances     |  143    143
┌ Warning: `hclust(d, method::Symbol, uplo::Union{Symbol, Nothing}=nothing)` is deprecated, use `hclust(d, linkage=method, uplo=uplo)` instead.
│   caller = hclust(::Array{Float64,2}, ::Symbol) at deprecated.jl:66
└ @ Clustering ./deprecated.jl:66
┌ Warning: Hclust::merge is deprecated, use Hclust::merges
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total
Leaf Ordering |    2      2
   Testing Microbiome tests passed 

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 2 minutes, 21 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed Tables ────────────────────── v0.2.11
 Installed Missings ──────────────────── v0.4.3
 Installed Compat ────────────────────── v3.0.0
 Installed Microbiome ────────────────── v0.4.0
 Installed DataStructures ────────────── v0.17.6
 Installed StaticArrays ──────────────── v0.12.1
 Installed StatsBase ─────────────────── v0.32.0
 Installed DataFrames ────────────────── v0.18.4
 Installed TableTraits ───────────────── v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed Reexport ──────────────────── v0.2.0
 Installed DataValueInterfaces ───────── v1.0.0
 Installed SpatialEcology ────────────── v0.4.3
 Installed CategoricalArrays ─────────── v0.7.3
 Installed Distances ─────────────────── v0.8.2
 Installed Clustering ────────────────── v0.13.3
 Installed JSON ──────────────────────── v0.21.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed RecipesBase ───────────────── v0.7.0
 Installed DataAPI ───────────────────── v1.1.0
 Installed OrderedCollections ────────── v1.1.0
 Installed NearestNeighbors ──────────── v0.4.4
 Installed Parsers ───────────────────── v0.3.10
 Installed SortingAlgorithms ─────────── v0.3.1
  Updating `~/.julia/environments/v1.3/Project.toml`
  [3bd8f0ae] + Microbiome v0.4.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [324d7699] + CategoricalArrays v0.7.3
  [aaaa29a8] + Clustering v0.13.3
  [34da2185] + Compat v3.0.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.18.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.8.2
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [3bd8f0ae] + Microbiome v0.4.0
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.2
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [348f2d5d] + SpatialEcology v0.4.3
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Testing Microbiome
 Resolving package versions...
    Status `/tmp/jl_7qxqzC/Manifest.toml`
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [34da2185] Compat v3.0.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.18.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [3bd8f0ae] Microbiome v0.4.0
  [e1d29d7a] Missings v0.4.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.10
  [2dfb63ee] PooledArrays v0.5.2
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [a2af1166] SortingAlgorithms v0.3.1
  [348f2d5d] SpatialEcology v0.4.3
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
WARNING: Compat.Statistics is deprecated, use Statistics instead.
  likely near /root/.julia/packages/CategoricalArrays/U3LvJ/src/extras.jl:1
Test Summary: | Pass  Total
Abundances    |  158    158
┌ Warning: implicit `dims=2` argument now has to be passed explicitly to specify that distances between columns should be computed
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total
Distances     |  143    143
┌ Warning: `hclust(d, method::Symbol, uplo::Union{Symbol, Nothing}=nothing)` is deprecated, use `hclust(d, linkage=method, uplo=uplo)` instead.
│   caller = hclust(::Array{Float64,2}, ::Symbol) at deprecated.jl:66
└ @ Clustering ./deprecated.jl:66
┌ Warning: Hclust::merge is deprecated, use Hclust::merges
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total
Leaf Ordering |    2      2
   Testing Microbiome tests passed