If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 55 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed Blosc ─────────────────────── v0.5.1
Installed BSON ──────────────────────── v0.2.4
Installed TableTraits ───────────────── v1.0.0
Installed HDF5 ──────────────────────── v0.12.5
Installed BinaryProvider ────────────── v0.5.8
Installed MLSuite ───────────────────── v0.1.2
Installed Conda ─────────────────────── v1.3.0
Installed TimerOutputs ──────────────── v0.5.3
Installed DataValueInterfaces ───────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed PyCall ────────────────────── v1.91.2
Installed ScikitLearnBase ───────────── v0.5.0
Installed Requires ──────────────────── v0.5.2
Installed Compat ────────────────────── v2.2.0
Installed ArgParse ──────────────────── v0.6.2
Installed TextWrap ──────────────────── v0.3.0
Installed SVMLightWriter ────────────── v0.1.0
Installed OrderedCollections ────────── v1.1.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed PandasLite ────────────────── v0.1.1
Installed DataStructures ────────────── v0.17.6
Installed Parsers ───────────────────── v0.3.10
Installed HDF5Utils ─────────────────── v0.1.2
Installed JSON ──────────────────────── v0.21.0
Installed FillArrays ────────────────── v0.7.4
Installed Iconv ─────────────────────── v0.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CMake ─────────────────────── v1.1.2
Installed Parameters ────────────────── v0.12.0
Installed CMakeWrapper ──────────────── v0.2.3
Installed DataValues ────────────────── v0.4.12
Installed VersionParsing ────────────── v1.1.3
Installed Glob ──────────────────────── v1.2.0
Installed BinDeps ───────────────────── v0.8.10
Installed MacroTools ────────────────── v0.5.2
Installed ProgressMeter ─────────────── v1.2.0
Installed PyCallUtils ───────────────── v0.2.0
Updating `~/.julia/environments/v1.2/Project.toml`
[fd36aebc] + MLSuite v0.1.2
Updating `~/.julia/environments/v1.2/Manifest.toml`
[c7e460c6] + ArgParse v0.6.2
[fbb218c0] + BSON v0.2.4
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[1a297f60] + FillArrays v0.7.4
[c27321d9] + Glob v1.2.0
[f67ccb44] + HDF5 v0.12.5
[2ec8e600] + HDF5Utils v0.1.2
[f60d2a9e] + Iconv v0.1.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[fd36aebc] + MLSuite v0.1.2
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[f5117550] + PandasLite v0.1.1
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[02651160] + PyCallUtils v0.2.0
[ae029012] + Requires v0.5.2
[b51eda20] + SVMLightWriter v0.1.0
[6e75b9c4] + ScikitLearnBase v0.5.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[b718987f] + TextWrap v0.3.0
[a759f4b9] + TimerOutputs v0.5.3
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ──→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ─→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building CMake ──→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Building Blosc ──→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Building HDF5 ───→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building MLSuite → `~/.julia/packages/MLSuite/fQBKz/deps/build.log`
┌ Error: Error building `MLSuite`:
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install scikit-learn pandas h2o lightgbm xgboost unidecode pyarrow thundersvm treelite`, ProcessExited(1)) [1]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:813 [inlined]
│ [2] #run#536(::Bool, ::typeof(run), ::Cmd) at ./process.jl:728
│ [3] run(::Cmd) at ./process.jl:726
│ [4] top-level scope at /root/.julia/packages/MLSuite/fQBKz/deps/build.jl:13
│ [5] include at ./boot.jl:328 [inlined]
│ [6] include_relative(::Module, ::String) at ./loading.jl:1094
│ [7] include(::Module, ::String) at ./Base.jl:31
│ [8] include(::String) at ./client.jl:431
│ [9] top-level scope at none:5
│ in expression starting at /root/.julia/packages/MLSuite/fQBKz/deps/build.jl:13
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/backwards_compatible_isolation.jl:647
Testing MLSuite
Resolving package versions...
Status `/tmp/jl_Zavscn/Manifest.toml`
[c7e460c6] ArgParse v0.6.2
[fbb218c0] BSON v0.2.4
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[a74b3585] Blosc v0.5.1
[631607c0] CMake v1.1.2
[d5fb7624] CMakeWrapper v0.2.3
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[1a297f60] FillArrays v0.7.4
[c27321d9] Glob v1.2.0
[f67ccb44] HDF5 v0.12.5
[2ec8e600] HDF5Utils v0.1.2
[f60d2a9e] Iconv v0.1.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[fd36aebc] MLSuite v0.1.2
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[f5117550] PandasLite v0.1.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[02651160] PyCallUtils v0.2.0
[ae029012] Requires v0.5.2
[b51eda20] SVMLightWriter v0.1.0
[6e75b9c4] ScikitLearnBase v0.5.0
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[b718987f] TextWrap v0.3.0
[a759f4b9] TimerOutputs v0.5.3
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:38 overwritten in module PandasLite at /root/.julia/packages/PandasLite/dd2WA/src/PandasLite.jl:115.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package numpy could not be found by pyimport. Usually this means
that you did not install numpy in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the numpy module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the numpy module, you can use `pyimport_conda("numpy", PKG)`,
where PKG is the Anaconda package the contains the module numpy,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'numpy'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /root/.julia/packages/PandasLite/dd2WA/src/PandasLite.jl:17
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:685
[6] _require_from_serialized(::String) at ./loading.jl:736
[7] _require(::Base.PkgId) at ./loading.jl:1023
[8] require(::Base.PkgId) at ./loading.jl:911
[9] require(::Module, ::Symbol) at ./loading.jl:906
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] top-level scope at none:2
[14] eval at ./boot.jl:330 [inlined]
[15] eval(::Expr) at ./client.jl:432
[16] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /root/.julia/packages/MLSuite/fQBKz/src/MLSuite.jl:7
ERROR: LoadError: Failed to precompile MLSuite [fd36aebc-0777-11ea-1be3-eb1bdc5c01e1] to /root/.julia/compiled/v1.2/MLSuite/fNOFY.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1253
[3] _require(::Base.PkgId) at ./loading.jl:1013
[4] require(::Base.PkgId) at ./loading.jl:911
[5] require(::Module, ::Symbol) at ./loading.jl:906
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1094
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:431
[10] top-level scope at none:5
in expression starting at /root/.julia/packages/MLSuite/fQBKz/test/runtests.jl:1
ERROR: Package MLSuite errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 44 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Iconv ─────────────────────── v0.1.0
Installed URIParser ─────────────────── v0.4.0
Installed ProgressMeter ─────────────── v1.2.0
Installed Compat ────────────────────── v2.2.0
Installed Parsers ───────────────────── v0.3.10
Installed DataStructures ────────────── v0.17.6
Installed MLSuite ───────────────────── v0.1.2
Installed BinaryProvider ────────────── v0.5.8
Installed Missings ──────────────────── v0.4.3
Installed MacroTools ────────────────── v0.5.2
Installed Parameters ────────────────── v0.12.0
Installed CMakeWrapper ──────────────── v0.2.3
Installed OrderedCollections ────────── v1.1.0
Installed PyCall ────────────────────── v1.91.2
Installed TableTraits ───────────────── v1.0.0
Installed BSON ──────────────────────── v0.2.4
Installed TimerOutputs ──────────────── v0.5.3
Installed JSON ──────────────────────── v0.21.0
Installed DataAPI ───────────────────── v1.1.0
Installed BinDeps ───────────────────── v0.8.10
Installed TableTraitsUtils ──────────── v1.0.1
Installed PyCallUtils ───────────────── v0.2.0
Installed ScikitLearnBase ───────────── v0.5.0
Installed CMake ─────────────────────── v1.1.2
Installed DataValueInterfaces ───────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed PandasLite ────────────────── v0.1.1
Installed Conda ─────────────────────── v1.3.0
Installed DataValues ────────────────── v0.4.12
Installed Blosc ─────────────────────── v0.5.1
Installed VersionParsing ────────────── v1.1.3
Installed HDF5 ──────────────────────── v0.12.5
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Glob ──────────────────────── v1.2.0
Installed TextWrap ──────────────────── v0.3.0
Installed ArgParse ──────────────────── v0.6.2
Installed HDF5Utils ─────────────────── v0.1.2
Installed SVMLightWriter ────────────── v0.1.0
Installed FillArrays ────────────────── v0.7.4
Updating `~/.julia/environments/v1.3/Project.toml`
[fd36aebc] + MLSuite v0.1.2
Updating `~/.julia/environments/v1.3/Manifest.toml`
[c7e460c6] + ArgParse v0.6.2
[fbb218c0] + BSON v0.2.4
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[1a297f60] + FillArrays v0.7.4
[c27321d9] + Glob v1.2.0
[f67ccb44] + HDF5 v0.12.5
[2ec8e600] + HDF5Utils v0.1.2
[f60d2a9e] + Iconv v0.1.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[fd36aebc] + MLSuite v0.1.2
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[f5117550] + PandasLite v0.1.1
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[02651160] + PyCallUtils v0.2.0
[ae029012] + Requires v0.5.2
[b51eda20] + SVMLightWriter v0.1.0
[6e75b9c4] + ScikitLearnBase v0.5.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[b718987f] + TextWrap v0.3.0
[a759f4b9] + TimerOutputs v0.5.3
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ──→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ─→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building CMake ──→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Building Blosc ──→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Building HDF5 ───→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building MLSuite → `~/.julia/packages/MLSuite/fQBKz/deps/build.log`
┌ Error: Error building `MLSuite`:
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install scikit-learn pandas h2o lightgbm xgboost unidecode pyarrow thundersvm treelite`, ProcessExited(1)) [1]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] #run#565(::Bool, ::typeof(run), ::Cmd) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /root/.julia/packages/MLSuite/fQBKz/deps/build.jl:13
│ [5] include at ./boot.jl:328 [inlined]
│ [6] include_relative(::Module, ::String) at ./loading.jl:1105
│ [7] include(::Module, ::String) at ./Base.jl:31
│ [8] include(::String) at ./client.jl:424
│ [9] top-level scope at none:5
│ in expression starting at /root/.julia/packages/MLSuite/fQBKz/deps/build.jl:13
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/backwards_compatible_isolation.jl:649
Testing MLSuite
Resolving package versions...
Status `/tmp/jl_nMzBSu/Manifest.toml`
[c7e460c6] ArgParse v0.6.2
[fbb218c0] BSON v0.2.4
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[a74b3585] Blosc v0.5.1
[631607c0] CMake v1.1.2
[d5fb7624] CMakeWrapper v0.2.3
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[1a297f60] FillArrays v0.7.4
[c27321d9] Glob v1.2.0
[f67ccb44] HDF5 v0.12.5
[2ec8e600] HDF5Utils v0.1.2
[f60d2a9e] Iconv v0.1.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[fd36aebc] MLSuite v0.1.2
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[f5117550] PandasLite v0.1.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[02651160] PyCallUtils v0.2.0
[ae029012] Requires v0.5.2
[b51eda20] SVMLightWriter v0.1.0
[6e75b9c4] ScikitLearnBase v0.5.0
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[b718987f] TextWrap v0.3.0
[a759f4b9] TimerOutputs v0.5.3
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:38 overwritten in module PandasLite at /root/.julia/packages/PandasLite/dd2WA/src/PandasLite.jl:115.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package numpy could not be found by pyimport. Usually this means
that you did not install numpy in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the numpy module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the numpy module, you can use `pyimport_conda("numpy", PKG)`,
where PKG is the Anaconda package the contains the module numpy,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'numpy'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /root/.julia/packages/PandasLite/dd2WA/src/PandasLite.jl:17
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[6] _require_from_serialized(::String) at ./loading.jl:743
[7] _require(::Base.PkgId) at ./loading.jl:1034
[8] require(::Base.PkgId) at ./loading.jl:922
[9] require(::Module, ::Symbol) at ./loading.jl:917
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] top-level scope at none:2
[14] eval at ./boot.jl:330 [inlined]
[15] eval(::Expr) at ./client.jl:425
[16] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /root/.julia/packages/MLSuite/fQBKz/src/MLSuite.jl:7
ERROR: LoadError: Failed to precompile MLSuite [fd36aebc-0777-11ea-1be3-eb1bdc5c01e1] to /root/.julia/compiled/v1.3/MLSuite/fNOFY_1rt2T.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:424
[10] top-level scope at none:6
in expression starting at /root/.julia/packages/MLSuite/fQBKz/test/runtests.jl:1
ERROR: Package MLSuite errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 55 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Iconv ─────────────────────── v0.1.0
Installed Conda ─────────────────────── v1.3.0
Installed CMake ─────────────────────── v1.1.2
Installed HDF5 ──────────────────────── v0.12.5
Installed PyCall ────────────────────── v1.91.2
Installed DataStructures ────────────── v0.17.6
Installed MLSuite ───────────────────── v0.1.2
Installed DataValues ────────────────── v0.4.12
Installed BinDeps ───────────────────── v0.8.10
Installed Blosc ─────────────────────── v0.5.1
Installed FillArrays ────────────────── v0.7.4
Installed Compat ────────────────────── v2.2.0
Installed MacroTools ────────────────── v0.5.2
Installed PyCallUtils ───────────────── v0.2.0
Installed CMakeWrapper ──────────────── v0.2.3
Installed Missings ──────────────────── v0.4.3
Installed Glob ──────────────────────── v1.2.0
Installed BSON ──────────────────────── v0.2.4
Installed URIParser ─────────────────── v0.4.0
Installed BinaryProvider ────────────── v0.5.8
Installed TableTraits ───────────────── v1.0.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed ArgParse ──────────────────── v0.6.2
Installed Requires ──────────────────── v0.5.2
Installed ProgressMeter ─────────────── v1.2.0
Installed Parameters ────────────────── v0.12.0
Installed TextWrap ──────────────────── v0.3.0
Installed DataValueInterfaces ───────── v1.0.0
Installed HDF5Utils ─────────────────── v0.1.2
Installed ScikitLearnBase ───────────── v0.5.0
Installed SVMLightWriter ────────────── v0.1.0
Installed VersionParsing ────────────── v1.1.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed OrderedCollections ────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed Parsers ───────────────────── v0.3.10
Installed TimerOutputs ──────────────── v0.5.3
Installed PandasLite ────────────────── v0.1.1
Updating `~/.julia/environments/v1.3/Project.toml`
[fd36aebc] + MLSuite v0.1.2
Updating `~/.julia/environments/v1.3/Manifest.toml`
[c7e460c6] + ArgParse v0.6.2
[fbb218c0] + BSON v0.2.4
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[1a297f60] + FillArrays v0.7.4
[c27321d9] + Glob v1.2.0
[f67ccb44] + HDF5 v0.12.5
[2ec8e600] + HDF5Utils v0.1.2
[f60d2a9e] + Iconv v0.1.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[fd36aebc] + MLSuite v0.1.2
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[f5117550] + PandasLite v0.1.1
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[02651160] + PyCallUtils v0.2.0
[ae029012] + Requires v0.5.2
[b51eda20] + SVMLightWriter v0.1.0
[6e75b9c4] + ScikitLearnBase v0.5.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[b718987f] + TextWrap v0.3.0
[a759f4b9] + TimerOutputs v0.5.3
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ──→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ─→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building CMake ──→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Building Blosc ──→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Building HDF5 ───→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building MLSuite → `~/.julia/packages/MLSuite/fQBKz/deps/build.log`
┌ Error: Error building `MLSuite`:
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install scikit-learn pandas h2o lightgbm xgboost unidecode pyarrow thundersvm treelite`, ProcessExited(1)) [1]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] #run#565(::Bool, ::typeof(run), ::Cmd) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /root/.julia/packages/MLSuite/fQBKz/deps/build.jl:13
│ [5] include at ./boot.jl:328 [inlined]
│ [6] include_relative(::Module, ::String) at ./loading.jl:1105
│ [7] include(::Module, ::String) at ./Base.jl:31
│ [8] include(::String) at ./client.jl:424
│ [9] top-level scope at none:5
│ in expression starting at /root/.julia/packages/MLSuite/fQBKz/deps/build.jl:13
└ @ Pkg.Operations /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/backwards_compatible_isolation.jl:649
Testing MLSuite
Resolving package versions...
Status `/tmp/jl_iA4vdb/Manifest.toml`
[c7e460c6] ArgParse v0.6.2
[fbb218c0] BSON v0.2.4
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[a74b3585] Blosc v0.5.1
[631607c0] CMake v1.1.2
[d5fb7624] CMakeWrapper v0.2.3
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[1a297f60] FillArrays v0.7.4
[c27321d9] Glob v1.2.0
[f67ccb44] HDF5 v0.12.5
[2ec8e600] HDF5Utils v0.1.2
[f60d2a9e] Iconv v0.1.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[fd36aebc] MLSuite v0.1.2
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[f5117550] PandasLite v0.1.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[02651160] PyCallUtils v0.2.0
[ae029012] Requires v0.5.2
[b51eda20] SVMLightWriter v0.1.0
[6e75b9c4] ScikitLearnBase v0.5.0
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[b718987f] TextWrap v0.3.0
[a759f4b9] TimerOutputs v0.5.3
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /root/.julia/packages/PyCallUtils/lHbXp/src/PyCallUtils.jl:38 overwritten in module PandasLite at /root/.julia/packages/PandasLite/dd2WA/src/PandasLite.jl:115.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package numpy could not be found by pyimport. Usually this means
that you did not install numpy in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the numpy module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the numpy module, you can use `pyimport_conda("numpy", PKG)`,
where PKG is the Anaconda package the contains the module numpy,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'numpy'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /root/.julia/packages/PandasLite/dd2WA/src/PandasLite.jl:17
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[6] _require_from_serialized(::String) at ./loading.jl:743
[7] _require(::Base.PkgId) at ./loading.jl:1034
[8] require(::Base.PkgId) at ./loading.jl:922
[9] require(::Module, ::Symbol) at ./loading.jl:917
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] top-level scope at none:2
[14] eval at ./boot.jl:330 [inlined]
[15] eval(::Expr) at ./client.jl:425
[16] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /root/.julia/packages/MLSuite/fQBKz/src/MLSuite.jl:7
ERROR: LoadError: Failed to precompile MLSuite [fd36aebc-0777-11ea-1be3-eb1bdc5c01e1] to /root/.julia/compiled/v1.3/MLSuite/fNOFY_TQD8k.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:424
[10] top-level scope at none:6
in expression starting at /root/.julia/packages/MLSuite/fQBKz/test/runtests.jl:1
ERROR: Package MLSuite errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10