MIToS

← Back to package list

If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.

Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 18 minutes, 27 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed Missings ───────────── v0.4.3
 Installed DataAPI ────────────── v1.1.0
 Installed NamedArrays ────────── v0.9.3
 Installed MbedTLS ────────────── v0.7.0
 Installed NearestNeighbors ───── v0.4.4
 Installed BinaryProvider ─────── v0.5.8
 Installed StatsBase ──────────── v0.32.0
 Installed ArgParse ───────────── v0.6.2
 Installed Requires ───────────── v0.5.2
 Installed Compat ─────────────── v2.2.0
 Installed Polynomials ────────── v0.6.0
 Installed OrderedCollections ─── v1.1.0
 Installed InvertedIndices ────── v1.0.0
 Installed IniFile ────────────── v0.5.0
 Installed RecipesBase ────────── v0.7.0
 Installed TextWrap ───────────── v0.3.0
 Installed Combinatorics ──────── v1.0.0
 Installed CodecZlib ──────────── v0.6.0
 Installed MIToS ──────────────── v2.4.0
 Installed DataStructures ─────── v0.17.6
 Installed HTTP ───────────────── v0.8.8
 Installed GZip ───────────────── v0.5.1
 Installed TranscodingStreams ─── v0.9.5
 Installed StaticArrays ───────── v0.12.1
 Installed LightXML ───────────── v0.8.1
 Installed SortingAlgorithms ──── v0.3.1
 Installed Distances ──────────── v0.8.2
 Installed Formatting ─────────── v0.4.1
 Installed Clustering ─────────── v0.13.3
 Installed AutoHashEquals ─────── v0.2.0
 Installed FastaIO ────────────── v0.5.0
 Installed ProgressMeter ──────── v1.2.0
 Installed PairwiseListMatrices ─ v0.7.0
  Updating `~/.julia/environments/v1.2/Project.toml`
  [51bafb47] + MIToS v2.4.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [c7e460c6] + ArgParse v0.6.2
  [15f4f7f2] + AutoHashEquals v0.2.0
  [b99e7846] + BinaryProvider v0.5.8
  [aaaa29a8] + Clustering v0.13.3
  [944b1d66] + CodecZlib v0.6.0
  [861a8166] + Combinatorics v1.0.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [b4f34e82] + Distances v0.8.2
  [a0c94c4b] + FastaIO v0.5.0
  [59287772] + Formatting v0.4.1
  [92fee26a] + GZip v0.5.1
  [cd3eb016] + HTTP v0.8.8
  [83e8ac13] + IniFile v0.5.0
  [41ab1584] + InvertedIndices v1.0.0
  [9c8b4983] + LightXML v0.8.1
  [51bafb47] + MIToS v2.4.0
  [739be429] + MbedTLS v0.7.0
  [e1d29d7a] + Missings v0.4.3
  [86f7a689] + NamedArrays v0.9.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [f9da4da7] + PairwiseListMatrices v0.7.0
  [f27b6e38] + Polynomials v0.6.0
  [92933f4c] + ProgressMeter v1.2.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [ae029012] + Requires v0.5.2
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [b718987f] + TextWrap v0.3.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
  Building LightXML ─→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
   Testing MIToS
 Resolving package versions...
 Installed DataValueInterfaces ───────── v1.0.0
 Installed URIParser ─────────────────── v0.4.0
 Installed TableTraits ───────────────── v1.0.0
 Installed Tables ────────────────────── v0.2.11
 Installed DataFrames ────────────────── v0.19.4
 Installed PooledArrays ──────────────── v0.5.2
 Installed Reexport ──────────────────── v0.2.0
 Installed ROCAnalysis ───────────────── v0.3.0
 Installed JSON ──────────────────────── v0.21.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed Parsers ───────────────────── v0.3.10
 Installed CategoricalArrays ─────────── v0.7.3
 Installed BinDeps ───────────────────── v0.8.10
 Installed SpecialFunctions ──────────── v0.8.0
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
    Status `/tmp/jl_7fPxZS/Manifest.toml`
  [c7e460c6] ArgParse v0.6.2
  [15f4f7f2] AutoHashEquals v0.2.0
  [9e28174c] BinDeps v0.8.10
  [b99e7846] BinaryProvider v0.5.8
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [944b1d66] CodecZlib v0.6.0
  [861a8166] Combinatorics v1.0.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [a0c94c4b] FastaIO v0.5.0
  [59287772] Formatting v0.4.1
  [92fee26a] GZip v0.5.1
  [cd3eb016] HTTP v0.8.8
  [83e8ac13] IniFile v0.5.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [9c8b4983] LightXML v0.8.1
  [51bafb47] MIToS v2.4.0
  [739be429] MbedTLS v0.7.0
  [e1d29d7a] Missings v0.4.3
  [86f7a689] NamedArrays v0.9.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [f9da4da7] PairwiseListMatrices v0.7.0
  [69de0a69] Parsers v0.3.10
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [92933f4c] ProgressMeter v1.2.0
  [f535d66d] ROCAnalysis v0.3.0
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v0.5.2
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [b718987f] TextWrap v0.3.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [30578b45] URIParser v0.4.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Utils         |   31     31
Test Summary: |  Pass  Total
MSA           | 25945  25945
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
[?25l[?25h   Cloning git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l┌ Warning: Some registries failed to update:
│     — /root/.julia/registries/General — failed to fetch from repo
└ @ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:1171
    Fetching: [>                                        ]  0.0 %
[?25h  Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[?25h  Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[ Info: Assigning UUID 92cae0f8-736c-5811-a1a9-a89e38a991ed to GaussDCA
[?25h Resolving package versions...
  Updating `/tmp/jl_7fPxZS/Project.toml`
  [92cae0f8] + GaussDCA v0.0.0 #master (https://github.com/carlobaldassi/GaussDCA.jl)
  Updating `/tmp/jl_7fPxZS/Manifest.toml`
  [92cae0f8] + GaussDCA v0.0.0 #master (https://github.com/carlobaldassi/GaussDCA.jl)
  [2a0f44e3] ~ Base64  [`@stdlib/Base64`] ⇒ 
  [9fa8497b] ~ Future  [`@stdlib/Future`] ⇒ 
  [b77e0a4c] ~ InteractiveUtils  [`@stdlib/InteractiveUtils`] ⇒ 
  [76f85450] ~ LibGit2  [`@stdlib/LibGit2`] ⇒ 
  [8f399da3] ~ Libdl  [`@stdlib/Libdl`] ⇒ 
  [56ddb016] ~ Logging  [`@stdlib/Logging`] ⇒ 
  [d6f4376e] ~ Markdown  [`@stdlib/Markdown`] ⇒ 
  [a63ad114] ~ Mmap  [`@stdlib/Mmap`] ⇒ 
  [de0858da] ~ Printf  [`@stdlib/Printf`] ⇒ 
  [3fa0cd96] ~ REPL  [`@stdlib/REPL`] ⇒ 
  [ea8e919c] ~ SHA  [`@stdlib/SHA`] ⇒ 
  [1a1011a3] ~ SharedArrays  [`@stdlib/SharedArrays`] ⇒ 
  [6462fe0b] ~ Sockets  [`@stdlib/Sockets`] ⇒ 
  [2f01184e] ~ SparseArrays  [`@stdlib/SparseArrays`] ⇒ 
  [cf7118a7] ~ UUIDs  [`@stdlib/UUIDs`] ⇒ 
  [4ec0a83e] ~ Unicode  [`@stdlib/Unicode`] ⇒ 
theta = 0.5 threshold = 10.0
M = 100 N = 20 Meff = 100.0
Test Summary: | Pass  Total
Information   |  744    744
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE FUL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NDG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE BMA is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE GAL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE FUC is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NDG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE BMA is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE GAL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: Using 2 residues for RMSD calculation because there are 1 residues without CA: [2]
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/Kabsch.jl:226
Test Summary: |  Pass  Total
PDB           | 13644  13644
┌ Warning: 22 is already in the mapping with the value 22. The value is replaced by 22
└ @ MIToS.SIFTS ~/.julia/packages/MIToS/Hha81/src/SIFTS/ResidueMapping.jl:356
┌ Warning: 25 is already in the mapping with the value 25. The value is replaced by 25
└ @ MIToS.SIFTS ~/.julia/packages/MIToS/Hha81/src/SIFTS/ResidueMapping.jl:356
Test Summary: | Pass  Total
SIFTS         |  704    704
Test Summary: | Pass  Total
Pfam          | 2458   2458
Test Summary: | Pass  Total
Scripts       |   51     51

----- =D -----

   Testing MIToS tests passed

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 18 minutes, 44 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed SortingAlgorithms ──── v0.3.1
 Installed IniFile ────────────── v0.5.0
 Installed NamedArrays ────────── v0.9.3
 Installed PairwiseListMatrices ─ v0.7.0
 Installed GZip ───────────────── v0.5.1
 Installed DataStructures ─────── v0.17.6
 Installed StaticArrays ───────── v0.12.1
 Installed BinaryProvider ─────── v0.5.8
 Installed Compat ─────────────── v2.2.0
 Installed InvertedIndices ────── v1.0.0
 Installed ProgressMeter ──────── v1.2.0
 Installed FastaIO ────────────── v0.5.0
 Installed NearestNeighbors ───── v0.4.4
 Installed Combinatorics ──────── v1.0.0
 Installed Missings ───────────── v0.4.3
 Installed RecipesBase ────────── v0.7.0
 Installed OrderedCollections ─── v1.1.0
 Installed DataAPI ────────────── v1.1.0
 Installed MIToS ──────────────── v2.4.0
 Installed Distances ──────────── v0.8.2
 Installed Polynomials ────────── v0.6.0
 Installed Requires ───────────── v0.5.2
 Installed MbedTLS ────────────── v0.7.0
 Installed CodecZlib ──────────── v0.6.0
 Installed AutoHashEquals ─────── v0.2.0
 Installed HTTP ───────────────── v0.8.8
 Installed TextWrap ───────────── v0.3.0
 Installed ArgParse ───────────── v0.6.2
 Installed TranscodingStreams ─── v0.9.5
 Installed LightXML ───────────── v0.8.1
 Installed Clustering ─────────── v0.13.3
 Installed Formatting ─────────── v0.4.1
 Installed StatsBase ──────────── v0.32.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [51bafb47] + MIToS v2.4.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [c7e460c6] + ArgParse v0.6.2
  [15f4f7f2] + AutoHashEquals v0.2.0
  [b99e7846] + BinaryProvider v0.5.8
  [aaaa29a8] + Clustering v0.13.3
  [944b1d66] + CodecZlib v0.6.0
  [861a8166] + Combinatorics v1.0.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [b4f34e82] + Distances v0.8.2
  [a0c94c4b] + FastaIO v0.5.0
  [59287772] + Formatting v0.4.1
  [92fee26a] + GZip v0.5.1
  [cd3eb016] + HTTP v0.8.8
  [83e8ac13] + IniFile v0.5.0
  [41ab1584] + InvertedIndices v1.0.0
  [9c8b4983] + LightXML v0.8.1
  [51bafb47] + MIToS v2.4.0
  [739be429] + MbedTLS v0.7.0
  [e1d29d7a] + Missings v0.4.3
  [86f7a689] + NamedArrays v0.9.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [f9da4da7] + PairwiseListMatrices v0.7.0
  [f27b6e38] + Polynomials v0.6.0
  [92933f4c] + ProgressMeter v1.2.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [ae029012] + Requires v0.5.2
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [b718987f] + TextWrap v0.3.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
  Building LightXML ─→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
   Testing MIToS
 Resolving package versions...
 Installed Parsers ───────────────────── v0.3.10
 Installed TableTraits ───────────────── v1.0.0
 Installed JSON ──────────────────────── v0.21.0
 Installed CategoricalArrays ─────────── v0.7.3
 Installed Tables ────────────────────── v0.2.11
 Installed DataValueInterfaces ───────── v1.0.0
 Installed ROCAnalysis ───────────────── v0.3.0
 Installed SpecialFunctions ──────────── v0.9.0
 Installed OpenSpecFun_jll ───────────── v0.5.3+1
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed Reexport ──────────────────── v0.2.0
 Installed DataFrames ────────────────── v0.19.4
    Status `/tmp/jl_NuyMHT/Manifest.toml`
  [c7e460c6] ArgParse v0.6.2
  [15f4f7f2] AutoHashEquals v0.2.0
  [b99e7846] BinaryProvider v0.5.8
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [944b1d66] CodecZlib v0.6.0
  [861a8166] Combinatorics v1.0.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [a0c94c4b] FastaIO v0.5.0
  [59287772] Formatting v0.4.1
  [92fee26a] GZip v0.5.1
  [cd3eb016] HTTP v0.8.8
  [83e8ac13] IniFile v0.5.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [9c8b4983] LightXML v0.8.1
  [51bafb47] MIToS v2.4.0
  [739be429] MbedTLS v0.7.0
  [e1d29d7a] Missings v0.4.3
  [86f7a689] NamedArrays v0.9.3
  [b8a86587] NearestNeighbors v0.4.4
  [efe28fd5] OpenSpecFun_jll v0.5.3+1
  [bac558e1] OrderedCollections v1.1.0
  [f9da4da7] PairwiseListMatrices v0.7.0
  [69de0a69] Parsers v0.3.10
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [92933f4c] ProgressMeter v1.2.0
  [f535d66d] ROCAnalysis v0.3.0
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v0.5.2
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.9.0
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [b718987f] TextWrap v0.3.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Utils         |   31     31
Test Summary: |  Pass  Total
MSA           | 25945  25945
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
[?25l[?25h┌ Warning: Some registries failed to update:
│     — /root/.julia/registries/General — failed to fetch from repo
└ @ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:1199
   Cloning git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l    Fetching: [>                                        ]  0.0 %
[?25h  Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[?25h[ Info: Assigning UUID 92cae0f8-736c-5811-a1a9-a89e38a991ed to GaussDCA
  Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[?25h Resolving package versions...
  Updating `/tmp/jl_NuyMHT/Project.toml`
  [92cae0f8] + GaussDCA v0.0.0 #master (https://github.com/carlobaldassi/GaussDCA.jl)
  Updating `/tmp/jl_NuyMHT/Manifest.toml`
  [92cae0f8] + GaussDCA v0.0.0 #master (https://github.com/carlobaldassi/GaussDCA.jl)
  [2a0f44e3] ~ Base64  [`@stdlib/Base64`] ⇒ 
  [9fa8497b] ~ Future  [`@stdlib/Future`] ⇒ 
  [b77e0a4c] ~ InteractiveUtils  [`@stdlib/InteractiveUtils`] ⇒ 
  [76f85450] ~ LibGit2  [`@stdlib/LibGit2`] ⇒ 
  [8f399da3] ~ Libdl  [`@stdlib/Libdl`] ⇒ 
  [56ddb016] ~ Logging  [`@stdlib/Logging`] ⇒ 
  [d6f4376e] ~ Markdown  [`@stdlib/Markdown`] ⇒ 
  [a63ad114] ~ Mmap  [`@stdlib/Mmap`] ⇒ 
  [de0858da] ~ Printf  [`@stdlib/Printf`] ⇒ 
  [3fa0cd96] ~ REPL  [`@stdlib/REPL`] ⇒ 
  [ea8e919c] ~ SHA  [`@stdlib/SHA`] ⇒ 
  [1a1011a3] ~ SharedArrays  [`@stdlib/SharedArrays`] ⇒ 
  [6462fe0b] ~ Sockets  [`@stdlib/Sockets`] ⇒ 
  [2f01184e] ~ SparseArrays  [`@stdlib/SparseArrays`] ⇒ 
  [cf7118a7] ~ UUIDs  [`@stdlib/UUIDs`] ⇒ 
  [4ec0a83e] ~ Unicode  [`@stdlib/Unicode`] ⇒ 
theta = 0.5 threshold = 10.0
M = 100 N = 20 Meff = 100.0
Test Summary: | Pass  Total
Information   |  744    744
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE FUL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NDG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE BMA is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE GAL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE FUC is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NDG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE BMA is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE GAL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: Using 2 residues for RMSD calculation because there are 1 residues without CA: [2]
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/Kabsch.jl:226
Test Summary: |  Pass  Total
PDB           | 13644  13644
┌ Warning: 22 is already in the mapping with the value 22. The value is replaced by 22
└ @ MIToS.SIFTS ~/.julia/packages/MIToS/Hha81/src/SIFTS/ResidueMapping.jl:356
┌ Warning: 25 is already in the mapping with the value 25. The value is replaced by 25
└ @ MIToS.SIFTS ~/.julia/packages/MIToS/Hha81/src/SIFTS/ResidueMapping.jl:356
Test Summary: | Pass  Total
SIFTS         |  704    704
Test Summary: | Pass  Total
Pfam          | 2458   2458
Test Summary: | Pass  Total
Scripts       |   51     51

----- =D -----

   Testing MIToS tests passed

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 19 minutes, 14 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed AutoHashEquals ─────── v0.2.0
 Installed Formatting ─────────── v0.4.1
 Installed NamedArrays ────────── v0.9.3
 Installed MbedTLS ────────────── v0.7.0
 Installed PairwiseListMatrices ─ v0.7.0
 Installed Polynomials ────────── v0.6.0
 Installed DataStructures ─────── v0.17.6
 Installed MIToS ──────────────── v2.4.0
 Installed Compat ─────────────── v2.2.0
 Installed StaticArrays ───────── v0.12.1
 Installed HTTP ───────────────── v0.8.8
 Installed StatsBase ──────────── v0.32.0
 Installed Missings ───────────── v0.4.3
 Installed CodecZlib ──────────── v0.6.0
 Installed ArgParse ───────────── v0.6.2
 Installed GZip ───────────────── v0.5.1
 Installed BinaryProvider ─────── v0.5.8
 Installed Distances ──────────── v0.8.2
 Installed InvertedIndices ────── v1.0.0
 Installed TranscodingStreams ─── v0.9.5
 Installed Requires ───────────── v0.5.2
 Installed ProgressMeter ──────── v1.2.0
 Installed LightXML ───────────── v0.8.1
 Installed IniFile ────────────── v0.5.0
 Installed Combinatorics ──────── v1.0.0
 Installed RecipesBase ────────── v0.7.0
 Installed TextWrap ───────────── v0.3.0
 Installed OrderedCollections ─── v1.1.0
 Installed NearestNeighbors ───── v0.4.4
 Installed DataAPI ────────────── v1.1.0
 Installed SortingAlgorithms ──── v0.3.1
 Installed FastaIO ────────────── v0.5.0
 Installed Clustering ─────────── v0.13.3
  Updating `~/.julia/environments/v1.3/Project.toml`
  [51bafb47] + MIToS v2.4.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [c7e460c6] + ArgParse v0.6.2
  [15f4f7f2] + AutoHashEquals v0.2.0
  [b99e7846] + BinaryProvider v0.5.8
  [aaaa29a8] + Clustering v0.13.3
  [944b1d66] + CodecZlib v0.6.0
  [861a8166] + Combinatorics v1.0.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [b4f34e82] + Distances v0.8.2
  [a0c94c4b] + FastaIO v0.5.0
  [59287772] + Formatting v0.4.1
  [92fee26a] + GZip v0.5.1
  [cd3eb016] + HTTP v0.8.8
  [83e8ac13] + IniFile v0.5.0
  [41ab1584] + InvertedIndices v1.0.0
  [9c8b4983] + LightXML v0.8.1
  [51bafb47] + MIToS v2.4.0
  [739be429] + MbedTLS v0.7.0
  [e1d29d7a] + Missings v0.4.3
  [86f7a689] + NamedArrays v0.9.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [f9da4da7] + PairwiseListMatrices v0.7.0
  [f27b6e38] + Polynomials v0.6.0
  [92933f4c] + ProgressMeter v1.2.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [ae029012] + Requires v0.5.2
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [b718987f] + TextWrap v0.3.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
  Building LightXML ─→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
   Testing MIToS
 Resolving package versions...
 Installed PooledArrays ──────────────── v0.5.2
 Installed TableTraits ───────────────── v1.0.0
 Installed Tables ────────────────────── v0.2.11
 Installed SpecialFunctions ──────────── v0.9.0
 Installed OpenSpecFun_jll ───────────── v0.5.3+1
 Installed DataValueInterfaces ───────── v1.0.0
 Installed ROCAnalysis ───────────────── v0.3.0
 Installed DataFrames ────────────────── v0.19.4
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed Reexport ──────────────────── v0.2.0
 Installed JSON ──────────────────────── v0.21.0
 Installed Parsers ───────────────────── v0.3.10
 Installed CategoricalArrays ─────────── v0.7.3
    Status `/tmp/jl_P4U0pL/Manifest.toml`
  [c7e460c6] ArgParse v0.6.2
  [15f4f7f2] AutoHashEquals v0.2.0
  [b99e7846] BinaryProvider v0.5.8
  [324d7699] CategoricalArrays v0.7.3
  [aaaa29a8] Clustering v0.13.3
  [944b1d66] CodecZlib v0.6.0
  [861a8166] Combinatorics v1.0.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [a0c94c4b] FastaIO v0.5.0
  [59287772] Formatting v0.4.1
  [92fee26a] GZip v0.5.1
  [cd3eb016] HTTP v0.8.8
  [83e8ac13] IniFile v0.5.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [9c8b4983] LightXML v0.8.1
  [51bafb47] MIToS v2.4.0
  [739be429] MbedTLS v0.7.0
  [e1d29d7a] Missings v0.4.3
  [86f7a689] NamedArrays v0.9.3
  [b8a86587] NearestNeighbors v0.4.4
  [efe28fd5] OpenSpecFun_jll v0.5.3+1
  [bac558e1] OrderedCollections v1.1.0
  [f9da4da7] PairwiseListMatrices v0.7.0
  [69de0a69] Parsers v0.3.10
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [92933f4c] ProgressMeter v1.2.0
  [f535d66d] ROCAnalysis v0.3.0
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v0.5.2
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.9.0
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [b718987f] TextWrap v0.3.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Utils         |   31     31
Test Summary: |  Pass  Total
MSA           | 25945  25945
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
[?25l[?25h┌ Warning: Some registries failed to update:
│     — /root/.julia/registries/General — failed to fetch from repo
└ @ Pkg.Types /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:1199
   Cloning git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l    Fetching: [>                                        ]  0.0 %
[?25h  Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[?25h[ Info: Assigning UUID 92cae0f8-736c-5811-a1a9-a89e38a991ed to GaussDCA
  Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[?25h Resolving package versions...
  Updating `/tmp/jl_P4U0pL/Project.toml`
  [92cae0f8] + GaussDCA v0.0.0 #master (https://github.com/carlobaldassi/GaussDCA.jl)
  Updating `/tmp/jl_P4U0pL/Manifest.toml`
  [92cae0f8] + GaussDCA v0.0.0 #master (https://github.com/carlobaldassi/GaussDCA.jl)
  [2a0f44e3] ~ Base64  [`@stdlib/Base64`] ⇒ 
  [9fa8497b] ~ Future  [`@stdlib/Future`] ⇒ 
  [b77e0a4c] ~ InteractiveUtils  [`@stdlib/InteractiveUtils`] ⇒ 
  [76f85450] ~ LibGit2  [`@stdlib/LibGit2`] ⇒ 
  [8f399da3] ~ Libdl  [`@stdlib/Libdl`] ⇒ 
  [56ddb016] ~ Logging  [`@stdlib/Logging`] ⇒ 
  [d6f4376e] ~ Markdown  [`@stdlib/Markdown`] ⇒ 
  [a63ad114] ~ Mmap  [`@stdlib/Mmap`] ⇒ 
  [de0858da] ~ Printf  [`@stdlib/Printf`] ⇒ 
  [3fa0cd96] ~ REPL  [`@stdlib/REPL`] ⇒ 
  [ea8e919c] ~ SHA  [`@stdlib/SHA`] ⇒ 
  [1a1011a3] ~ SharedArrays  [`@stdlib/SharedArrays`] ⇒ 
  [6462fe0b] ~ Sockets  [`@stdlib/Sockets`] ⇒ 
  [2f01184e] ~ SparseArrays  [`@stdlib/SparseArrays`] ⇒ 
  [cf7118a7] ~ UUIDs  [`@stdlib/UUIDs`] ⇒ 
  [4ec0a83e] ~ Unicode  [`@stdlib/Unicode`] ⇒ 
theta = 0.5 threshold = 10.0
M = 100 N = 20 Meff = 100.0
Test Summary: | Pass  Total
Information   |  744    744
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE FUL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NDG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE BMA is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE GAL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE FUC is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NDG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE BMA is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE GAL is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE MAN is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: RESIDUE NAG is unknown to MIToS.PDB (AtomsData.jl)
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/AtomsData.jl:439
┌ Warning: Using 2 residues for RMSD calculation because there are 1 residues without CA: [2]
└ @ MIToS.PDB ~/.julia/packages/MIToS/Hha81/src/PDB/Kabsch.jl:226
Test Summary: |  Pass  Total
PDB           | 13644  13644
┌ Warning: 22 is already in the mapping with the value 22. The value is replaced by 22
└ @ MIToS.SIFTS ~/.julia/packages/MIToS/Hha81/src/SIFTS/ResidueMapping.jl:356
┌ Warning: 25 is already in the mapping with the value 25. The value is replaced by 25
└ @ MIToS.SIFTS ~/.julia/packages/MIToS/Hha81/src/SIFTS/ResidueMapping.jl:356
Test Summary: | Pass  Total
SIFTS         |  704    704
Test Summary: | Pass  Total
Pfam          | 2458   2458
Test Summary: | Pass  Total
Scripts       |   51     51

----- =D -----

   Testing MIToS tests passed