If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was successful .
Last evaluation was ago and took 3 minutes, 54 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed YAML ──────────────── v0.3.2
Installed Codecs ────────────── v0.5.0
Installed IndexableBitVectors ─ v1.0.0
Installed BioCore ───────────── v2.0.5
Installed Polynomials ───────── v0.6.0
Installed BinaryProvider ────── v0.5.8
Installed IntervalTrees ─────── v1.0.0
Installed GeneticVariation ──── v0.4.0
Installed Compat ────────────── v2.2.0
Installed Twiddle ───────────── v1.1.1
Installed Automa ────────────── v0.8.0
Installed BioSymbols ────────── v3.1.0
Installed BGZFStreams ───────── v0.3.0
Installed Combinatorics ─────── v0.7.0
Installed OrderedCollections ── v1.1.0
Installed CodecZlib ─────────── v0.6.0
Installed RecipesBase ───────── v0.7.0
Installed TranscodingStreams ── v0.9.5
Installed DataStructures ────── v0.17.6
Installed BufferedStreams ───── v1.0.0
Installed BioSequences ──────── v1.1.0
Updating `~/.julia/environments/v1.2/Project.toml`
[9bc6ac9d] + GeneticVariation v0.4.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[9bc6ac9d] + GeneticVariation v0.4.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing GeneticVariation
Resolving package versions...
Status `/tmp/jl_t4Umeg/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[9bc6ac9d] GeneticVariation v0.4.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[bac558e1] OrderedCollections v1.1.0
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
[ Info: Compiling VCF parser...
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
Test Summary: | Pass Total
VCF | 165 165
Test Summary: | Pass Total
BCF | 39 39
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = ip:0x0
└ @ Core :-1
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = ip:0x0
└ @ Core :-1
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
Test Summary: | Pass Total
Site counting | 348 348
Test Summary: | Pass Total
MASH distances | 3 3
Test Summary: | Pass Total
Allele frequenies | 6 6
Test Summary: | Pass Total
Diversity Measures | 3 3
Test Summary: | Pass Total
Segregating sites | 2 2
Testing GeneticVariation tests passed
Results with Julia v1.3.0
Testing was successful .
Last evaluation was ago and took 4 minutes, 5 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed YAML ──────────────── v0.3.2
Installed Combinatorics ─────── v0.7.0
Installed Compat ────────────── v2.2.0
Installed IndexableBitVectors ─ v1.0.0
Installed BioSymbols ────────── v3.1.0
Installed DataStructures ────── v0.17.6
Installed BinaryProvider ────── v0.5.8
Installed GeneticVariation ──── v0.4.0
Installed OrderedCollections ── v1.1.0
Installed RecipesBase ───────── v0.7.0
Installed BioSequences ──────── v1.1.0
Installed BGZFStreams ───────── v0.3.0
Installed Polynomials ───────── v0.6.0
Installed Automa ────────────── v0.8.0
Installed IntervalTrees ─────── v1.0.0
Installed Codecs ────────────── v0.5.0
Installed CodecZlib ─────────── v0.6.0
Installed Twiddle ───────────── v1.1.1
Installed TranscodingStreams ── v0.9.5
Installed BioCore ───────────── v2.0.5
Installed BufferedStreams ───── v1.0.0
Updating `~/.julia/environments/v1.3/Project.toml`
[9bc6ac9d] + GeneticVariation v0.4.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[9bc6ac9d] + GeneticVariation v0.4.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing GeneticVariation
Resolving package versions...
Status `/tmp/jl_T5P4kn/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[9bc6ac9d] GeneticVariation v0.4.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[bac558e1] OrderedCollections v1.1.0
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
[ Info: Compiling VCF parser...
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
Test Summary: | Pass Total
VCF | 165 165
Test Summary: | Pass Total
BCF | 39 39
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = ip:0x0
└ @ Core :-1
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = ip:0x0
└ @ Core :-1
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
Test Summary: | Pass Total
Site counting | 348 348
Test Summary: | Pass Total
MASH distances | 3 3
Test Summary: | Pass Total
Allele frequenies | 6 6
Test Summary: | Pass Total
Diversity Measures | 3 3
Test Summary: | Pass Total
Segregating sites | 2 2
Testing GeneticVariation tests passed
Results with Julia v1.3.1-pre-7704df0a5a
Testing was successful .
Last evaluation was ago and took 4 minutes, 15 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Compat ────────────── v2.2.0
Installed BioCore ───────────── v2.0.5
Installed Polynomials ───────── v0.6.0
Installed DataStructures ────── v0.17.6
Installed BioSymbols ────────── v3.1.0
Installed Automa ────────────── v0.8.0
Installed IntervalTrees ─────── v1.0.0
Installed GeneticVariation ──── v0.4.0
Installed BufferedStreams ───── v1.0.0
Installed CodecZlib ─────────── v0.6.0
Installed YAML ──────────────── v0.3.2
Installed BinaryProvider ────── v0.5.8
Installed TranscodingStreams ── v0.9.5
Installed Twiddle ───────────── v1.1.1
Installed Codecs ────────────── v0.5.0
Installed Combinatorics ─────── v0.7.0
Installed OrderedCollections ── v1.1.0
Installed RecipesBase ───────── v0.7.0
Installed BGZFStreams ───────── v0.3.0
Installed BioSequences ──────── v1.1.0
Installed IndexableBitVectors ─ v1.0.0
Updating `~/.julia/environments/v1.3/Project.toml`
[9bc6ac9d] + GeneticVariation v0.4.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[9bc6ac9d] + GeneticVariation v0.4.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing GeneticVariation
Resolving package versions...
Status `/tmp/jl_9OduBB/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[9bc6ac9d] GeneticVariation v0.4.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[bac558e1] OrderedCollections v1.1.0
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
[ Info: Compiling VCF parser...
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
Test Summary: | Pass Total
VCF | 165 165
Test Summary: | Pass Total
BCF | 39 39
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = ip:0x0
└ @ Core :-1
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = ip:0x0
└ @ Core :-1
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_one_nibbles is deprecated, use count_1111_nibbles instead
│ caller = bp_chunk_count at site_counting.jl:80 [inlined]
└ @ Core ~/.julia/packages/GeneticVariation/r8DAL/src/site_counting.jl:80
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│ caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
Test Summary: | Pass Total
Site counting | 348 348
Test Summary: | Pass Total
MASH distances | 3 3
Test Summary: | Pass Total
Allele frequenies | 6 6
Test Summary: | Pass Total
Diversity Measures | 3 3
Test Summary: | Pass Total
Segregating sites | 2 2
Testing GeneticVariation tests passed