If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 1 minute, 55 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Requires ─────────── v0.5.2
Installed Parsers ──────────── v0.3.10
Installed Compat ───────────── v2.2.0
Installed OrderedCollections ─ v1.1.0
Installed PyCall ───────────── v1.91.2
Installed FEniCS ───────────── v0.4.0
Installed DataStructures ───── v0.17.6
Installed JSON ─────────────── v0.21.0
Installed VersionParsing ───── v1.1.3
Installed Conda ────────────── v1.3.0
Installed MacroTools ───────── v0.5.2
Installed ProgressMeter ────── v1.2.0
Updating `~/.julia/environments/v1.2/Project.toml`
[186dfeec] + FEniCS v0.4.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.6
[186dfeec] + FEniCS v0.4.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[ae029012] + Requires v0.5.2
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building FEniCS → `~/.julia/packages/FEniCS/bNxUh/deps/build.log`
Testing FEniCS
Resolving package versions...
Installed URIParser ─────────────────── v0.4.0
Installed BinaryProvider ────────────── v0.5.8
Installed DiffEqBase ────────────────── v6.7.0
Installed CommonSubexpressions ──────── v0.2.0
Installed Inflate ───────────────────── v0.1.1
Installed Adapt ─────────────────────── v1.0.0
Installed TableTraits ───────────────── v1.0.0
Installed GenericSVD ────────────────── v0.2.2
Installed DocStringExtensions ───────── v0.8.1
Installed Reexport ──────────────────── v0.2.0
Installed ExponentialUtilities ──────── v1.5.1
Installed ForwardDiff ───────────────── v0.10.7
Installed VertexSafeGraphs ──────────── v0.1.0
Installed FunctionWrappers ──────────── v1.0.0
Installed RecipesBase ───────────────── v0.7.0
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed DiffRules ─────────────────── v0.1.0
Installed IterativeSolvers ──────────── v0.8.1
Installed Roots ─────────────────────── v0.8.3
Installed TreeViews ─────────────────── v0.3.0
Installed LightGraphs ───────────────── v1.3.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed RecursiveFactorization ────── v0.1.0
Installed NaNMath ───────────────────── v0.3.3
Installed ArrayInterface ────────────── v2.0.0
Installed StaticArrays ──────────────── v0.12.1
Installed DiffResults ───────────────── v0.0.4
Installed RecursiveArrayTools ───────── v1.2.0
Installed SparseDiffTools ───────────── v1.0.0
Installed MuladdMacro ───────────────── v0.2.1
Installed SimpleTraits ──────────────── v0.9.1
Installed Parameters ────────────────── v0.12.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed BinDeps ───────────────────── v0.8.10
Installed ArnoldiMethod ─────────────── v0.0.4
Installed SpecialFunctions ──────────── v0.8.0
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Status `/tmp/jl_O2PV91/Manifest.toml`
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[864edb3b] DataStructures v0.17.6
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.5.1
[186dfeec] FEniCS v0.4.0
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[01680d73] GenericSVD v0.2.2
[d25df0c9] Inflate v0.1.1
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[46d2c3a1] MuladdMacro v0.2.1
[77ba4419] NaNMath v0.3.3
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[699a6c99] SimpleTraits v0.9.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
mshr has not been includedWARNING: Method definition lvsolve(Any, Any, Any) in module FEniCS at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #lvsolve(Any, typeof(FEniCS.lvsolve), Any, Any, Any) in module FEniCS overwritten.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve(Any, Any) in module FEniCS at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #nlvsolve(Any, typeof(FEniCS.nlvsolve), Any, Any) in module FEniCS overwritten.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package fenics could not be found by pyimport. Usually this means
that you did not install fenics in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the fenics module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the fenics module, you can use `pyimport_conda("fenics", PKG)`,
where PKG is the Anaconda package the contains the module fenics,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'fenics'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] __init__() at /root/.julia/packages/FEniCS/bNxUh/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:685
[5] _require_from_serialized(::String) at ./loading.jl:736
[6] _require(::Base.PkgId) at ./loading.jl:1023
[7] require(::Base.PkgId) at ./loading.jl:911
[8] require(::Module, ::Symbol) at ./loading.jl:906
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1094
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:431
[13] top-level scope at none:5
during initialization of module FEniCS
in expression starting at /root/.julia/packages/FEniCS/bNxUh/test/runtests.jl:1
ERROR: Package FEniCS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 1 minute, 41 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Requires ─────────── v0.5.2
Installed VersionParsing ───── v1.1.3
Installed Compat ───────────── v2.2.0
Installed OrderedCollections ─ v1.1.0
Installed PyCall ───────────── v1.91.2
Installed FEniCS ───────────── v0.4.0
Installed MacroTools ───────── v0.5.2
Installed Conda ────────────── v1.3.0
Installed JSON ─────────────── v0.21.0
Installed ProgressMeter ────── v1.2.0
Installed Parsers ──────────── v0.3.10
Installed DataStructures ───── v0.17.6
Updating `~/.julia/environments/v1.3/Project.toml`
[186dfeec] + FEniCS v0.4.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.6
[186dfeec] + FEniCS v0.4.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[ae029012] + Requires v0.5.2
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building FEniCS → `~/.julia/packages/FEniCS/bNxUh/deps/build.log`
Testing FEniCS
Resolving package versions...
Installed FunctionWrappers ──────────── v1.0.0
Installed DocStringExtensions ───────── v0.8.1
Installed TreeViews ─────────────────── v0.3.0
Installed DiffResults ───────────────── v0.0.4
Installed ExponentialUtilities ──────── v1.5.1
Installed StaticArrays ──────────────── v0.12.1
Installed Roots ─────────────────────── v0.8.3
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed Parameters ────────────────── v0.12.0
Installed TableTraits ───────────────── v1.0.0
Installed RecipesBase ───────────────── v0.7.0
Installed SpecialFunctions ──────────── v0.9.0
Installed CommonSubexpressions ──────── v0.2.0
Installed ForwardDiff ───────────────── v0.10.7
Installed LightGraphs ───────────────── v1.3.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed GenericSVD ────────────────── v0.2.2
Installed NaNMath ───────────────────── v0.3.3
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffRules ─────────────────── v0.1.0
Installed SparseDiffTools ───────────── v1.0.0
Installed Adapt ─────────────────────── v1.0.0
Installed ArrayInterface ────────────── v2.0.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed DiffEqBase ────────────────── v6.7.0
Installed Inflate ───────────────────── v0.1.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed MuladdMacro ───────────────── v0.2.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed SimpleTraits ──────────────── v0.9.1
Installed RecursiveFactorization ────── v0.1.0
Installed VertexSafeGraphs ──────────── v0.1.0
Installed Reexport ──────────────────── v0.2.0
Installed IterativeSolvers ──────────── v0.8.1
Status `/tmp/jl_vd1JV4/Manifest.toml`
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[864edb3b] DataStructures v0.17.6
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.5.1
[186dfeec] FEniCS v0.4.0
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[01680d73] GenericSVD v0.2.2
[d25df0c9] Inflate v0.1.1
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[46d2c3a1] MuladdMacro v0.2.1
[77ba4419] NaNMath v0.3.3
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[699a6c99] SimpleTraits v0.9.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[a2a6695c] TreeViews v0.3.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
mshr has not been includedWARNING: Method definition lvsolve(Any, Any, Any) in module FEniCS at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #lvsolve(Any, typeof(FEniCS.lvsolve), Any, Any, Any) in module FEniCS overwritten.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve(Any, Any) in module FEniCS at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #nlvsolve(Any, typeof(FEniCS.nlvsolve), Any, Any) in module FEniCS overwritten.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package fenics could not be found by pyimport. Usually this means
that you did not install fenics in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the fenics module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the fenics module, you can use `pyimport_conda("fenics", PKG)`,
where PKG is the Anaconda package the contains the module fenics,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'fenics'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] __init__() at /root/.julia/packages/FEniCS/bNxUh/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[5] _require_from_serialized(::String) at ./loading.jl:743
[6] _require(::Base.PkgId) at ./loading.jl:1034
[7] require(::Base.PkgId) at ./loading.jl:922
[8] require(::Module, ::Symbol) at ./loading.jl:917
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at none:6
during initialization of module FEniCS
in expression starting at /root/.julia/packages/FEniCS/bNxUh/test/runtests.jl:1
ERROR: Package FEniCS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 1 minute, 39 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed ProgressMeter ────── v1.2.0
Installed Compat ───────────── v2.2.0
Installed Conda ────────────── v1.3.0
Installed PyCall ───────────── v1.91.2
Installed FEniCS ───────────── v0.4.0
Installed MacroTools ───────── v0.5.2
Installed DataStructures ───── v0.17.6
Installed JSON ─────────────── v0.21.0
Installed Requires ─────────── v0.5.2
Installed Parsers ──────────── v0.3.10
Installed VersionParsing ───── v1.1.3
Installed OrderedCollections ─ v1.1.0
Updating `~/.julia/environments/v1.3/Project.toml`
[186dfeec] + FEniCS v0.4.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.6
[186dfeec] + FEniCS v0.4.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[ae029012] + Requires v0.5.2
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building FEniCS → `~/.julia/packages/FEniCS/bNxUh/deps/build.log`
Testing FEniCS
Resolving package versions...
Installed Adapt ─────────────────────── v1.0.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed NaNMath ───────────────────── v0.3.3
Installed SparseDiffTools ───────────── v1.0.0
Installed IterativeSolvers ──────────── v0.8.1
Installed FunctionWrappers ──────────── v1.0.0
Installed LightGraphs ───────────────── v1.3.0
Installed StaticArrays ──────────────── v0.12.1
Installed DiffResults ───────────────── v0.0.4
Installed SpecialFunctions ──────────── v0.9.0
Installed ExponentialUtilities ──────── v1.5.1
Installed OrdinaryDiffEq ────────────── v5.25.0
Installed Inflate ───────────────────── v0.1.1
Installed ForwardDiff ───────────────── v0.10.7
Installed Roots ─────────────────────── v0.8.3
Installed Parameters ────────────────── v0.12.0
Installed CommonSubexpressions ──────── v0.2.0
Installed TableTraits ───────────────── v1.0.0
Installed DiffRules ─────────────────── v0.1.0
Installed DocStringExtensions ───────── v0.8.1
Installed MuladdMacro ───────────────── v0.2.1
Installed ArrayInterface ────────────── v2.0.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed GenericSVD ────────────────── v0.2.2
Installed SimpleTraits ──────────────── v0.9.1
Installed Reexport ──────────────────── v0.2.0
Installed RecursiveFactorization ────── v0.1.0
Installed DiffEqBase ────────────────── v6.7.0
Installed VertexSafeGraphs ──────────── v0.1.0
Installed RecipesBase ───────────────── v0.7.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed TreeViews ─────────────────── v0.3.0
Installed DiffEqDiffTools ───────────── v1.5.0
Status `/tmp/jl_Q3m5wF/Manifest.toml`
[79e6a3ab] Adapt v1.0.0
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[864edb3b] DataStructures v0.17.6
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.5.1
[186dfeec] FEniCS v0.4.0
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[01680d73] GenericSVD v0.2.2
[d25df0c9] Inflate v0.1.1
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[46d2c3a1] MuladdMacro v0.2.1
[77ba4419] NaNMath v0.3.3
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[699a6c99] SimpleTraits v0.9.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[a2a6695c] TreeViews v0.3.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
mshr has not been includedWARNING: Method definition lvsolve(Any, Any, Any) in module FEniCS at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #lvsolve(Any, typeof(FEniCS.lvsolve), Any, Any, Any) in module FEniCS overwritten.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve(Any, Any) in module FEniCS at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /root/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition #nlvsolve(Any, typeof(FEniCS.nlvsolve), Any, Any) in module FEniCS overwritten.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package fenics could not be found by pyimport. Usually this means
that you did not install fenics in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the fenics module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the fenics module, you can use `pyimport_conda("fenics", PKG)`,
where PKG is the Anaconda package the contains the module fenics,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'fenics'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] __init__() at /root/.julia/packages/FEniCS/bNxUh/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[5] _require_from_serialized(::String) at ./loading.jl:743
[6] _require(::Base.PkgId) at ./loading.jl:1034
[7] require(::Base.PkgId) at ./loading.jl:922
[8] require(::Module, ::Symbol) at ./loading.jl:917
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at none:6
during initialization of module FEniCS
in expression starting at /root/.julia/packages/FEniCS/bNxUh/test/runtests.jl:1
ERROR: Package FEniCS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10