If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was successful .
Last evaluation was ago and took 22 minutes, 6 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Missings ──────────────────── v0.4.3
Installed Showoff ───────────────────── v0.3.1
Installed NearestNeighbors ──────────── v0.4.4
Installed TableTraits ───────────────── v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed DataFrames ────────────────── v0.19.4
Installed DynamicHMCModels ──────────── v1.0.2
Installed LineSearches ──────────────── v7.0.1
Installed Contour ───────────────────── v0.5.1
Installed PDMats ────────────────────── v0.9.10
Installed AbstractFFTs ──────────────── v0.5.0
Installed BinaryProvider ────────────── v0.5.8
Installed Colors ────────────────────── v0.9.6
Installed CommonSubexpressions ──────── v0.2.0
Installed RangeArrays ───────────────── v0.3.1
Installed StatsBase ─────────────────── v0.32.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed Conda ─────────────────────── v1.3.0
Installed URIParser ─────────────────── v0.4.0
Installed StatsFuns ─────────────────── v0.9.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Measures ──────────────────── v0.3.0
Installed Plots ─────────────────────── v0.28.2
Installed DataValueInterfaces ───────── v1.0.0
Installed MCMCDiagnostics ───────────── v0.3.0
Installed DocStringExtensions ───────── v0.8.1
Installed Requires ──────────────────── v0.5.2
Installed Reexport ──────────────────── v0.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed PooledArrays ──────────────── v0.5.2
Installed OffsetArrays ──────────────── v0.11.2
Installed Rmath ─────────────────────── v0.5.1
Installed ForwardDiff ───────────────── v0.10.7
Installed Widgets ───────────────────── v0.6.2
Installed Observables ───────────────── v0.2.3
Installed OrderedCollections ────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed IterTools ─────────────────── v1.3.0
Installed Calculus ──────────────────── v0.5.1
Installed FilePathsBase ─────────────── v0.7.0
Installed RecipesBase ───────────────── v0.7.0
Installed KernelDensity ─────────────── v0.5.1
Installed WeakRefStrings ────────────── v0.6.1
Installed FixedPointNumbers ─────────── v0.6.1
Installed DataStructures ────────────── v0.17.6
Installed DynamicHMC ────────────────── v2.1.1
Installed ArgCheck ──────────────────── v1.0.1
Installed Distributions ─────────────── v0.21.9
Installed Parsers ───────────────────── v0.3.10
Installed FillArrays ────────────────── v0.8.2
Installed TransformVariables ────────── v0.3.8
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffRules ─────────────────── v0.1.0
Installed Ratios ────────────────────── v0.3.1
Installed JSON ──────────────────────── v0.21.0
Installed FFMPEG ────────────────────── v0.2.3
Installed StatsPlots ────────────────── v0.12.0
Installed StaticArrays ──────────────── v0.12.1
Installed ArrayInterface ────────────── v2.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed DiffResults ───────────────── v0.0.4
Installed Parameters ────────────────── v0.12.0
Installed FFTW ──────────────────────── v1.1.0
Installed MCMCChains ────────────────── v0.3.15
Installed Interpolations ────────────── v0.12.5
Installed BenchmarkTools ────────────── v0.4.3
Installed IntervalSets ──────────────── v0.3.2
Installed CategoricalArrays ─────────── v0.7.3
Installed GeometryTypes ─────────────── v0.7.6
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed QuadGK ────────────────────── v2.1.1
Installed PlotUtils ─────────────────── v0.6.1
Installed DataValues ────────────────── v0.4.12
Installed SortingAlgorithms ─────────── v0.3.1
Installed Clustering ────────────────── v0.13.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed Distances ─────────────────── v0.8.2
Installed LogDensityProblems ────────── v0.9.2
Installed LazyArrays ────────────────── v0.14.10
Installed VersionParsing ────────────── v1.1.3
Installed GR ────────────────────────── v0.44.0
Installed ColorTypes ────────────────── v0.8.0
Installed AxisArrays ────────────────── v0.3.3
Installed MacroTools ────────────────── v0.5.2
Installed PositiveFactorizations ────── v0.2.3
Installed SpecialFunctions ──────────── v0.8.0
Installed PlotThemes ────────────────── v1.0.0
Installed Optim ─────────────────────── v0.19.5
Installed Arpack ────────────────────── v0.3.1
Installed BinDeps ───────────────────── v0.8.10
Updating `~/.julia/environments/v1.2/Project.toml`
[6266e5bf] + DynamicHMCModels v1.0.2
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[6266e5bf] + DynamicHMCModels v1.0.2
[c87230d0] + FFMPEG v0.2.3
[7a1cc6ca] + FFTW v1.1.0
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.6
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[6fdf6af0] + LogDensityProblems v0.9.2
[c7f686f2] + MCMCChains v0.3.15
[6e857e4b] + MCMCDiagnostics v0.3.0
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[f3b207a7] + StatsPlots v0.12.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[84d833dd] + TransformVariables v0.3.8
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/loJ3F/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing DynamicHMCModels
Status `/tmp/jl_xNlKrD/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[bbc10e6e] DynamicHMC v2.1.1
[6266e5bf] DynamicHMCModels v1.0.2
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.1.0
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[28b8d3ca] GR v0.44.0
[4d00f742] GeometryTypes v0.7.6
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.3.15
[6e857e4b] MCMCDiagnostics v0.3.0
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.12.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[84d833dd] TransformVariables v0.3.8
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
* ../scripts/02/m2.1d.jl *
Object of type Chains, with data of type 1000×1×4 Array{Float64,3}
Iterations = 1:1000
Thinning interval = 1
Chains = 1, 2, 3, 4
Samples per chain = 1000
parameters = p
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼────────────┼──────────┼───────────┼────────────┼────────────┼─────────┼────────┤
│ 1 │ p │ 0.623158 │ 0.0877456 │ 0.00138738 │ 0.00216313 │ 1561.41 │ 1.0019 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼────────────┼──────────┼─────────┼──────────┼─────────┼──────────┤
│ 1 │ p │ 0.446296 │ 0.56298 │ 0.623917 │ 0.68785 │ 0.783868 │
1.1912105121593766
* ../scripts/02/m2.1d.jl completed
* ../scripts/04/m4.1d.jl *
1.1098532298641555
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.71 0.88 0.95 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 18%, 2 => 69%, 3 => 10%, 4 => 3%
* ../scripts/04/m4.1d.jl completed
* ../scripts/04/m4.2d.jl *
1.1239295812284555
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.93, 5/25/50/75/95%: 0.73 0.9 0.96 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 14%, 2 => 68%, 3 => 17%
* ../scripts/04/m4.2d.jl completed
* ../scripts/04/m4.5d.jl *
-4.0013242576346938e6
1.176953474235607
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.9, 5/25/50/75/95%: 0.67 0.86 0.94 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 56%, 3 => 42%, 4 => 1%
* ../scripts/04/m4.5d.jl completed
* ../scripts/04/m4.5d1.jl *
-4.001310714028722e6
0.9906310010117171
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.72 0.88 0.95 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 45%, 3 => 53%, 4 => 1%
* ../scripts/04/m4.5d1.jl completed
* ../scripts/05/m5.1d.jl *
-2225.6614871340917
0.9609036449204926
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.9, 5/25/50/75/95%: 0.68 0.84 0.94 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 6%, 2 => 67%, 3 => 14%, 4 => 10%, 5 => 4%, 6 => 0%
* ../scripts/05/m5.1d.jl completed
* ../scripts/05/m5.3d.jl *
-2222.175273500088
1.1157363115403864
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.72 0.89 0.96 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 35%, 3 => 61%, 4 => 3%, 5 => 1%
* ../scripts/05/m5.3d.jl completed
* ../scripts/05/m5.6d.jl *
0.9916779681307275
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.88, 5/25/50/75/95%: 0.57 0.84 0.94 0.98 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 5%, 2 => 61%, 3 => 34%, 4 => 0%
* ../scripts/05/m5.6d.jl completed
* ../scripts/10/m10.2d.jl *
* ../scripts/10/m10.2d.jl completed
* ../scripts/10/m10.4d.jl *
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼────────────┼───────────┼──────────┼────────────┼───────────┼─────────┼──────────┤
│ 1 │ bp │ 0.853879 │ 0.268726 │ 0.00849788 │ 0.0119703 │ 524.831 │ 0.999882 │
│ 2 │ bpC │ -0.147743 │ 0.300584 │ 0.00950531 │ 0.0111868 │ 725.042 │ 1.00053 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼────────────┼───────────┼───────────┼───────────┼───────────┼──────────┤
│ 1 │ bp │ 0.332687 │ 0.677641 │ 0.855364 │ 1.03356 │ 1.38892 │
│ 2 │ bpC │ -0.747979 │ -0.345777 │ -0.150484 │ 0.0578404 │ 0.451969 │
* ../scripts/10/m10.4d.jl completed
* ../scripts/12/m12.6d.jl *
-197.2517993032011
0.8699310515430343
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.95, 5/25/50/75/95%: 0.79 0.93 0.98 1.0 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 0%, 2 => 0%, 3 => 0%, 4 => 0%, 5 => 14%, 6 => 81%, 7 => 4%, 8 => 1%
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼───────────────┼──────────┼───────────┼────────────┼────────────┼─────────┼──────────┤
│ 1 │ a │ 1.12146 │ 0.757809 │ 0.023964 │ 0.0426233 │ 280.776 │ 0.999138 │
│ 2 │ bp │ 0.259 │ 0.0829465 │ 0.002623 │ 0.00513567 │ 269.314 │ 0.999237 │
│ 3 │ sigma_society │ 0.311263 │ 0.131229 │ 0.00414984 │ 0.00758096 │ 361.232 │ 1.00024 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼───────────────┼───────────┼──────────┼──────────┼──────────┼──────────┤
│ 1 │ a │ -0.283358 │ 0.670424 │ 1.10978 │ 1.54778 │ 2.61972 │
│ 2 │ bp │ 0.0835306 │ 0.213277 │ 0.261609 │ 0.307346 │ 0.41378 │
│ 3 │ sigma_society │ 0.107919 │ 0.218346 │ 0.292836 │ 0.385746 │ 0.614396 │
* ../scripts/12/m12.6d.jl completed
Testing DynamicHMCModels tests passed
Results with Julia v1.3.0
Testing was successful .
Last evaluation was ago and took 17 minutes, 45 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed PlotThemes ────────────────── v1.0.0
Installed KernelDensity ─────────────── v0.5.1
Installed URIParser ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Arpack ────────────────────── v0.3.1
Installed LogDensityProblems ────────── v0.9.2
Installed DynamicHMCModels ──────────── v1.0.2
Installed DiffResults ───────────────── v0.0.4
Installed DataStructures ────────────── v0.17.6
Installed LazyArrays ────────────────── v0.14.10
Installed StatsPlots ────────────────── v0.12.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed StaticArrays ──────────────── v0.12.1
Installed LineSearches ──────────────── v7.0.1
Installed QuadGK ────────────────────── v2.1.1
Installed DocStringExtensions ───────── v0.8.1
Installed FFTW ──────────────────────── v1.0.1
Installed Compat ────────────────────── v2.2.0
Installed CategoricalArrays ─────────── v0.7.3
Installed StatsFuns ─────────────────── v0.9.0
Installed BinaryProvider ────────────── v0.5.8
Installed NLSolversBase ─────────────── v7.5.0
Installed MCMCChains ────────────────── v0.3.15
Installed Parsers ───────────────────── v0.3.10
Installed InvertedIndices ───────────── v1.0.0
Installed CSV ───────────────────────── v0.5.18
Installed IterTools ─────────────────── v1.3.0
Installed Missings ──────────────────── v0.4.3
Installed NearestNeighbors ──────────── v0.4.4
Installed Parameters ────────────────── v0.12.0
Installed MacroTools ────────────────── v0.5.2
Installed Distributions ─────────────── v0.21.9
Installed Rmath ─────────────────────── v0.5.1
Installed RangeArrays ───────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed PositiveFactorizations ────── v0.2.3
Installed Plots ─────────────────────── v0.28.2
Installed IntervalSets ──────────────── v0.3.2
Installed Observables ───────────────── v0.2.3
Installed OrderedCollections ────────── v1.1.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed SpecialFunctions ──────────── v0.8.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed ArgCheck ──────────────────── v1.0.1
Installed Showoff ───────────────────── v0.3.1
Installed JSON ──────────────────────── v0.21.0
Installed PlotUtils ─────────────────── v0.6.1
Installed TransformVariables ────────── v0.3.8
Installed ColorTypes ────────────────── v0.8.0
Installed RecipesBase ───────────────── v0.7.0
Installed CommonSubexpressions ──────── v0.2.0
Installed BinDeps ───────────────────── v0.8.10
Installed Interpolations ────────────── v0.12.5
Installed Distances ─────────────────── v0.8.2
Installed DataAPI ───────────────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed ForwardDiff ───────────────── v0.10.7
Installed DataValueInterfaces ───────── v1.0.0
Installed DynamicHMC ────────────────── v2.1.1
Installed NaNMath ───────────────────── v0.3.3
Installed Optim ─────────────────────── v0.19.5
Installed DataValues ────────────────── v0.4.12
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffRules ─────────────────── v0.1.0
Installed Colors ────────────────────── v0.9.6
Installed Calculus ──────────────────── v0.5.1
Installed Conda ─────────────────────── v1.3.0
Installed MCMCDiagnostics ───────────── v0.3.0
Installed Requires ──────────────────── v0.5.2
Installed ArrayInterface ────────────── v2.0.0
Installed Measures ──────────────────── v0.3.0
Installed VersionParsing ────────────── v1.1.3
Installed FilePathsBase ─────────────── v0.7.0
Installed Widgets ───────────────────── v0.6.2
Installed GR ────────────────────────── v0.44.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed DataFrames ────────────────── v0.19.4
Installed Contour ───────────────────── v0.5.1
Installed GeometryTypes ─────────────── v0.7.6
Installed WeakRefStrings ────────────── v0.6.1
Installed FFMPEG ────────────────────── v0.2.3
Installed OffsetArrays ──────────────── v0.11.2
Installed FillArrays ────────────────── v0.8.2
Installed PDMats ────────────────────── v0.9.10
Installed StatsBase ─────────────────── v0.32.0
Installed Reexport ──────────────────── v0.2.0
Installed AxisArrays ────────────────── v0.3.3
Installed BenchmarkTools ────────────── v0.4.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed AbstractFFTs ──────────────── v0.4.1
Installed Clustering ────────────────── v0.13.3
Updating `~/.julia/environments/v1.3/Project.toml`
[6266e5bf] + DynamicHMCModels v1.0.2
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[6266e5bf] + DynamicHMCModels v1.0.2
[c87230d0] + FFMPEG v0.2.3
[7a1cc6ca] + FFTW v1.0.1
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.6
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[6fdf6af0] + LogDensityProblems v0.9.2
[c7f686f2] + MCMCChains v0.3.15
[6e857e4b] + MCMCDiagnostics v0.3.0
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[f3b207a7] + StatsPlots v0.12.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[84d833dd] + TransformVariables v0.3.8
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing DynamicHMCModels
Status `/tmp/jl_SYZr7D/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[bbc10e6e] DynamicHMC v2.1.1
[6266e5bf] DynamicHMCModels v1.0.2
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[28b8d3ca] GR v0.44.0
[4d00f742] GeometryTypes v0.7.6
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.3.15
[6e857e4b] MCMCDiagnostics v0.3.0
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.12.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[84d833dd] TransformVariables v0.3.8
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
* ../scripts/02/m2.1d.jl *
Object of type Chains, with data of type 1000×1×4 Array{Float64,3}
Iterations = 1:1000
Thinning interval = 1
Chains = 1, 2, 3, 4
Samples per chain = 1000
parameters = p
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼────────────┼──────────┼───────────┼────────────┼────────────┼─────────┼────────┤
│ 1 │ p │ 0.623158 │ 0.0877456 │ 0.00138738 │ 0.00216313 │ 1561.41 │ 1.0019 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼────────────┼──────────┼─────────┼──────────┼─────────┼──────────┤
│ 1 │ p │ 0.446296 │ 0.56298 │ 0.623917 │ 0.68785 │ 0.783868 │
1.1912105121593766
* ../scripts/02/m2.1d.jl completed
* ../scripts/04/m4.1d.jl *
1.1098532298641555
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.71 0.88 0.95 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 18%, 2 => 69%, 3 => 10%, 4 => 3%
* ../scripts/04/m4.1d.jl completed
* ../scripts/04/m4.2d.jl *
1.1239295812284555
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.93, 5/25/50/75/95%: 0.73 0.9 0.96 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 14%, 2 => 68%, 3 => 17%
* ../scripts/04/m4.2d.jl completed
* ../scripts/04/m4.5d.jl *
-4.0013242576346938e6
1.176953474235607
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.9, 5/25/50/75/95%: 0.67 0.86 0.94 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 56%, 3 => 42%, 4 => 1%
* ../scripts/04/m4.5d.jl completed
* ../scripts/04/m4.5d1.jl *
-4.001310714028722e6
0.9906310010117171
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.72 0.88 0.95 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 45%, 3 => 53%, 4 => 1%
* ../scripts/04/m4.5d1.jl completed
* ../scripts/05/m5.1d.jl *
-2225.6614871340917
0.9609036449204926
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.9, 5/25/50/75/95%: 0.68 0.84 0.94 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 6%, 2 => 67%, 3 => 14%, 4 => 10%, 5 => 4%, 6 => 0%
* ../scripts/05/m5.1d.jl completed
* ../scripts/05/m5.3d.jl *
-2222.175273500088
1.1157363115403864
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.72 0.89 0.96 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 35%, 3 => 61%, 4 => 3%, 5 => 1%
* ../scripts/05/m5.3d.jl completed
* ../scripts/05/m5.6d.jl *
0.9916779681307275
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.88, 5/25/50/75/95%: 0.57 0.84 0.94 0.98 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 5%, 2 => 61%, 3 => 34%, 4 => 0%
* ../scripts/05/m5.6d.jl completed
* ../scripts/10/m10.2d.jl *
* ../scripts/10/m10.2d.jl completed
* ../scripts/10/m10.4d.jl *
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼────────────┼───────────┼──────────┼────────────┼───────────┼─────────┼──────────┤
│ 1 │ bp │ 0.853879 │ 0.268726 │ 0.00849788 │ 0.0119703 │ 524.831 │ 0.999882 │
│ 2 │ bpC │ -0.147743 │ 0.300584 │ 0.00950531 │ 0.0111868 │ 725.042 │ 1.00053 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼────────────┼───────────┼───────────┼───────────┼───────────┼──────────┤
│ 1 │ bp │ 0.332687 │ 0.677641 │ 0.855364 │ 1.03356 │ 1.38892 │
│ 2 │ bpC │ -0.747979 │ -0.345777 │ -0.150484 │ 0.0578404 │ 0.451969 │
* ../scripts/10/m10.4d.jl completed
* ../scripts/12/m12.6d.jl *
-197.2517993032011
0.8699310515430343
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.95, 5/25/50/75/95%: 0.79 0.93 0.98 1.0 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 0%, 2 => 0%, 3 => 0%, 4 => 0%, 5 => 14%, 6 => 81%, 7 => 4%, 8 => 1%
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼───────────────┼──────────┼───────────┼────────────┼────────────┼─────────┼──────────┤
│ 1 │ a │ 1.12146 │ 0.757809 │ 0.023964 │ 0.0426233 │ 280.776 │ 0.999138 │
│ 2 │ bp │ 0.259 │ 0.0829465 │ 0.002623 │ 0.00513567 │ 269.314 │ 0.999237 │
│ 3 │ sigma_society │ 0.311263 │ 0.131229 │ 0.00414984 │ 0.00758096 │ 361.232 │ 1.00024 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼───────────────┼───────────┼──────────┼──────────┼──────────┼──────────┤
│ 1 │ a │ -0.283358 │ 0.670424 │ 1.10978 │ 1.54778 │ 2.61972 │
│ 2 │ bp │ 0.0835306 │ 0.213277 │ 0.261609 │ 0.307346 │ 0.41378 │
│ 3 │ sigma_society │ 0.107919 │ 0.218346 │ 0.292836 │ 0.385746 │ 0.614396 │
* ../scripts/12/m12.6d.jl completed
Testing DynamicHMCModels tests passed
Results with Julia v1.3.1-pre-7704df0a5a
Testing was successful .
Last evaluation was ago and took 13 minutes, 45 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed ColorTypes ────────────────── v0.8.0
Installed Conda ─────────────────────── v1.3.0
Installed GeometryTypes ─────────────── v0.7.6
Installed Plots ─────────────────────── v0.28.2
Installed Colors ────────────────────── v0.9.6
Installed DataValues ────────────────── v0.4.12
Installed DynamicHMCModels ──────────── v1.0.2
Installed WeakRefStrings ────────────── v0.6.1
Installed QuadGK ────────────────────── v2.1.1
Installed Optim ─────────────────────── v0.19.5
Installed DataStructures ────────────── v0.17.6
Installed ArrayLayouts ──────────────── v0.1.5
Installed NaNMath ───────────────────── v0.3.3
Installed LogDensityProblems ────────── v0.9.2
Installed Tables ────────────────────── v0.2.11
Installed SpecialFunctions ──────────── v0.8.0
Installed StaticArrays ──────────────── v0.12.1
Installed ArgCheck ──────────────────── v1.0.1
Installed LazyArrays ────────────────── v0.14.10
Installed BinDeps ───────────────────── v0.8.10
Installed DataFrames ────────────────── v0.19.4
Installed Compat ────────────────────── v2.2.0
Installed BenchmarkTools ────────────── v0.4.3
Installed IterTools ─────────────────── v1.3.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed StatsPlots ────────────────── v0.12.0
Installed DiffResults ───────────────── v0.0.4
Installed MacroTools ────────────────── v0.5.2
Installed StatsBase ─────────────────── v0.32.0
Installed Showoff ───────────────────── v0.3.1
Installed FillArrays ────────────────── v0.8.2
Installed ForwardDiff ───────────────── v0.10.7
Installed Arpack ────────────────────── v0.3.1
Installed OffsetArrays ──────────────── v0.11.2
Installed AxisAlgorithms ────────────── v1.0.0
Installed LineSearches ──────────────── v7.0.1
Installed AxisArrays ────────────────── v0.3.3
Installed URIParser ─────────────────── v0.4.0
Installed FFTW ──────────────────────── v1.0.1
Installed Calculus ──────────────────── v0.5.1
Installed TableTraits ───────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed CommonSubexpressions ──────── v0.2.0
Installed PooledArrays ──────────────── v0.5.2
Installed Widgets ───────────────────── v0.6.2
Installed StatsFuns ─────────────────── v0.9.0
Installed TransformVariables ────────── v0.3.8
Installed FilePathsBase ─────────────── v0.7.0
Installed DocStringExtensions ───────── v0.8.1
Installed Parameters ────────────────── v0.12.0
Installed BinaryProvider ────────────── v0.5.8
Installed Rmath ─────────────────────── v0.5.1
Installed InvertedIndices ───────────── v1.0.0
Installed Measures ──────────────────── v0.3.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Interpolations ────────────── v0.12.5
Installed DiffRules ─────────────────── v0.1.0
Installed FFMPEG ────────────────────── v0.2.3
Installed IntervalSets ──────────────── v0.3.2
Installed Requires ──────────────────── v0.5.2
Installed DataValueInterfaces ───────── v1.0.0
Installed ArrayInterface ────────────── v2.0.0
Installed AbstractFFTs ──────────────── v0.4.1
Installed DynamicHMC ────────────────── v2.1.1
Installed Distances ─────────────────── v0.8.2
Installed Distributions ─────────────── v0.21.9
Installed KernelDensity ─────────────── v0.5.1
Installed Reexport ──────────────────── v0.2.0
Installed PlotUtils ─────────────────── v0.6.1
Installed PositiveFactorizations ────── v0.2.3
Installed Contour ───────────────────── v0.5.1
Installed RangeArrays ───────────────── v0.3.1
Installed PlotThemes ────────────────── v1.0.0
Installed RecipesBase ───────────────── v0.7.0
Installed Clustering ────────────────── v0.13.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed JSON ──────────────────────── v0.21.0
Installed DataAPI ───────────────────── v1.1.0
Installed OrderedCollections ────────── v1.1.0
Installed PDMats ────────────────────── v0.9.10
Installed MCMCChains ────────────────── v0.3.15
Installed GR ────────────────────────── v0.44.0
Installed Parsers ───────────────────── v0.3.10
Installed NearestNeighbors ──────────── v0.4.4
Installed DiffEqDiffTools ───────────── v1.5.0
Installed CSV ───────────────────────── v0.5.18
Installed VersionParsing ────────────── v1.1.3
Installed Observables ───────────────── v0.2.3
Installed SortingAlgorithms ─────────── v0.3.1
Installed MCMCDiagnostics ───────────── v0.3.0
Updating `~/.julia/environments/v1.3/Project.toml`
[6266e5bf] + DynamicHMCModels v1.0.2
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[6266e5bf] + DynamicHMCModels v1.0.2
[c87230d0] + FFMPEG v0.2.3
[7a1cc6ca] + FFTW v1.0.1
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.6
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[5078a376] + LazyArrays v0.14.10
[d3d80556] + LineSearches v7.0.1
[6fdf6af0] + LogDensityProblems v0.9.2
[c7f686f2] + MCMCChains v0.3.15
[6e857e4b] + MCMCDiagnostics v0.3.0
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.0
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.2
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[f3b207a7] + StatsPlots v0.12.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[84d833dd] + TransformVariables v0.3.8
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[ea10d353] + WeakRefStrings v0.6.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building GR ──────────────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──────────→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───────────→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing DynamicHMCModels
Status `/tmp/jl_bZsLmm/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[dce04be8] ArgCheck v1.0.1
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ffbed154] DocStringExtensions v0.8.1
[bbc10e6e] DynamicHMC v2.1.1
[6266e5bf] DynamicHMCModels v1.0.2
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[28b8d3ca] GR v0.44.0
[4d00f742] GeometryTypes v0.7.6
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[5078a376] LazyArrays v0.14.10
[d3d80556] LineSearches v7.0.1
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.3.15
[6e857e4b] MCMCDiagnostics v0.3.0
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.12.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[84d833dd] TransformVariables v0.3.8
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
* ../scripts/02/m2.1d.jl *
Object of type Chains, with data of type 1000×1×4 Array{Float64,3}
Iterations = 1:1000
Thinning interval = 1
Chains = 1, 2, 3, 4
Samples per chain = 1000
parameters = p
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼────────────┼──────────┼───────────┼────────────┼────────────┼─────────┼────────┤
│ 1 │ p │ 0.623158 │ 0.0877456 │ 0.00138738 │ 0.00216313 │ 1561.41 │ 1.0019 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼────────────┼──────────┼─────────┼──────────┼─────────┼──────────┤
│ 1 │ p │ 0.446296 │ 0.56298 │ 0.623917 │ 0.68785 │ 0.783868 │
1.1912105121593766
* ../scripts/02/m2.1d.jl completed
* ../scripts/04/m4.1d.jl *
1.1098532298641555
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.71 0.88 0.95 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 18%, 2 => 69%, 3 => 10%, 4 => 3%
* ../scripts/04/m4.1d.jl completed
* ../scripts/04/m4.2d.jl *
1.1239295812284555
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.93, 5/25/50/75/95%: 0.73 0.9 0.96 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 14%, 2 => 68%, 3 => 17%
* ../scripts/04/m4.2d.jl completed
* ../scripts/04/m4.5d.jl *
-4.0013242576346938e6
1.176953474235607
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.9, 5/25/50/75/95%: 0.67 0.86 0.94 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 56%, 3 => 42%, 4 => 1%
* ../scripts/04/m4.5d.jl completed
* ../scripts/04/m4.5d1.jl *
-4.001310714028722e6
0.9906310010117171
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.72 0.88 0.95 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 45%, 3 => 53%, 4 => 1%
* ../scripts/04/m4.5d1.jl completed
* ../scripts/05/m5.1d.jl *
-2225.6614871340917
0.9609036449204926
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.9, 5/25/50/75/95%: 0.68 0.84 0.94 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 6%, 2 => 67%, 3 => 14%, 4 => 10%, 5 => 4%, 6 => 0%
* ../scripts/05/m5.1d.jl completed
* ../scripts/05/m5.3d.jl *
-2222.175273500088
1.1157363115403864
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.92, 5/25/50/75/95%: 0.72 0.89 0.96 0.99 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 1%, 2 => 35%, 3 => 61%, 4 => 3%, 5 => 1%
* ../scripts/05/m5.3d.jl completed
* ../scripts/05/m5.6d.jl *
0.9916779681307275
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.88, 5/25/50/75/95%: 0.57 0.84 0.94 0.98 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 5%, 2 => 61%, 3 => 34%, 4 => 0%
* ../scripts/05/m5.6d.jl completed
* ../scripts/10/m10.2d.jl *
* ../scripts/10/m10.2d.jl completed
* ../scripts/10/m10.4d.jl *
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼────────────┼───────────┼──────────┼────────────┼───────────┼─────────┼──────────┤
│ 1 │ bp │ 0.853879 │ 0.268726 │ 0.00849788 │ 0.0119703 │ 524.831 │ 0.999882 │
│ 2 │ bpC │ -0.147743 │ 0.300584 │ 0.00950531 │ 0.0111868 │ 725.042 │ 1.00053 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼────────────┼───────────┼───────────┼───────────┼───────────┼──────────┤
│ 1 │ bp │ 0.332687 │ 0.677641 │ 0.855364 │ 1.03356 │ 1.38892 │
│ 2 │ bpC │ -0.747979 │ -0.345777 │ -0.150484 │ 0.0578404 │ 0.451969 │
* ../scripts/10/m10.4d.jl completed
* ../scripts/12/m12.6d.jl *
-197.2517993032011
0.8699310515430343
Hamiltonian Monte Carlo sample of length 1000
acceptance rate mean: 0.95, 5/25/50/75/95%: 0.79 0.93 0.98 1.0 1.0
termination: divergence => 0%, max_depth => 0%, turning => 100%
depth: 0 => 0%, 1 => 0%, 2 => 0%, 3 => 0%, 4 => 0%, 5 => 14%, 6 => 81%, 7 => 4%, 8 => 1%
2-element Array{ChainDataFrame,1}
Summary Statistics
│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │
├─────┼───────────────┼──────────┼───────────┼────────────┼────────────┼─────────┼──────────┤
│ 1 │ a │ 1.12146 │ 0.757809 │ 0.023964 │ 0.0426233 │ 280.776 │ 0.999138 │
│ 2 │ bp │ 0.259 │ 0.0829465 │ 0.002623 │ 0.00513567 │ 269.314 │ 0.999237 │
│ 3 │ sigma_society │ 0.311263 │ 0.131229 │ 0.00414984 │ 0.00758096 │ 361.232 │ 1.00024 │
Quantiles
│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │
│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼───────────────┼───────────┼──────────┼──────────┼──────────┼──────────┤
│ 1 │ a │ -0.283358 │ 0.670424 │ 1.10978 │ 1.54778 │ 2.61972 │
│ 2 │ bp │ 0.0835306 │ 0.213277 │ 0.261609 │ 0.307346 │ 0.41378 │
│ 3 │ sigma_society │ 0.107919 │ 0.218346 │ 0.292836 │ 0.385746 │ 0.614396 │
* ../scripts/12/m12.6d.jl completed
Testing DynamicHMCModels tests passed