If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 27 minutes, 48 seconds.
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Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Missings ──────────────────── v0.4.3
Installed Showoff ───────────────────── v0.3.1
Installed Inflate ───────────────────── v0.1.1
Installed DiffEqBayes ───────────────── v2.2.0
Installed ApproxBayes ───────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed DataFrames ────────────────── v0.19.4
Installed DistributionsAD ───────────── v0.1.1
Installed BinaryProvider ────────────── v0.5.8
Installed Contour ───────────────────── v0.5.1
Installed LineSearches ──────────────── v7.0.1
Installed AbstractFFTs ──────────────── v0.4.1
Installed CoupledFields ─────────────── v0.1.0
Installed PDMats ────────────────────── v0.9.10
Installed Colors ────────────────────── v0.9.6
Installed Conda ─────────────────────── v1.3.0
Installed StatsBase ─────────────────── v0.32.0
Installed FiniteDifferences ─────────── v0.9.0
Installed RangeArrays ───────────────── v0.3.1
Installed CommonSubexpressions ──────── v0.2.0
Installed Measures ──────────────────── v0.3.0
Installed Tracker ───────────────────── v0.2.5
Installed ArrayLayouts ──────────────── v0.1.5
Installed StatsFuns ─────────────────── v0.9.0
Installed DiffEqBase ────────────────── v6.7.0
Installed Adapt ─────────────────────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed Polynomials ───────────────── v0.6.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed DocStringExtensions ───────── v0.8.1
Installed IRTools ───────────────────── v0.3.0
Installed SymEngine ─────────────────── v0.7.0
Installed NLSolversBase ─────────────── v7.5.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Zygote ────────────────────── v0.4.1
Installed PooledArrays ──────────────── v0.5.2
Installed Requires ──────────────────── v0.5.2
Installed InplaceOps ────────────────── v0.3.0
Installed Mamba ─────────────────────── v0.12.2
Installed Compose ───────────────────── v0.7.3
Installed Reexport ──────────────────── v0.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed TimerOutputs ──────────────── v0.5.3
Installed Libtask ───────────────────── v0.3.1
Installed Compat ────────────────────── v2.2.0
Installed FunctionWrappers ──────────── v1.0.0
Installed ForwardDiff ───────────────── v0.10.7
Installed OffsetArrays ──────────────── v0.11.2
Installed Rmath ─────────────────────── v0.5.1
Installed OrderedCollections ────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed NNlib ─────────────────────── v0.6.0
Installed StructArrays ──────────────── v0.4.0
Installed Loess ─────────────────────── v0.5.0
Installed Calculus ──────────────────── v0.5.1
Installed AdvancedHMC ───────────────── v0.2.14
Installed KernelDensity ─────────────── v0.5.1
Installed IterTools ─────────────────── v1.3.0
Installed Roots ─────────────────────── v0.8.3
Installed MappedArrays ──────────────── v0.2.2
Installed Combinatorics ─────────────── v1.0.0
Installed Gadfly ────────────────────── v1.0.1
Installed RecipesBase ───────────────── v0.7.0
Installed TreeViews ─────────────────── v0.3.0
Installed DataStructures ────────────── v0.17.6
Installed ArgCheck ──────────────────── v1.0.1
Installed DynamicHMC ────────────────── v2.1.1
Installed Turing ────────────────────── v0.7.1
Installed Distributions ─────────────── v0.21.9
Installed IterativeSolvers ──────────── v0.8.1
Installed FixedPointNumbers ─────────── v0.6.1
Installed Parsers ───────────────────── v0.3.10
Installed LightGraphs ───────────────── v1.3.0
Installed FillArrays ────────────────── v0.8.2
Installed DiffEqDiffTools ───────────── v1.5.0
Installed TransformVariables ────────── v0.3.8
Installed DiffRules ─────────────────── v0.1.0
Installed RecursiveFactorization ────── v0.1.0
Installed Cairo ─────────────────────── v0.8.0
Installed Ratios ────────────────────── v0.3.1
Installed Media ─────────────────────── v0.5.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed Graphics ──────────────────── v0.4.0
Installed JSON ──────────────────────── v0.21.0
Installed ArrayInterface ────────────── v2.0.0
Installed Interpolations ────────────── v0.12.5
Installed Juno ──────────────────────── v0.7.2
Installed NaNMath ───────────────────── v0.3.3
Installed StaticArrays ──────────────── v0.12.1
Installed MCMCChains ────────────────── v0.4.0
Installed LabelledArrays ────────────── v1.0.0
Installed DiffResults ───────────────── v0.0.4
Installed ParameterizedFunctions ────── v4.2.1
Installed MuladdMacro ───────────────── v0.2.1
Installed Parameters ────────────────── v0.12.0
Installed SimpleTraits ──────────────── v0.9.1
Installed BenchmarkTools ────────────── v0.4.3
Installed IntervalSets ──────────────── v0.3.2
Installed FFTW ──────────────────────── v1.0.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed QuadGK ────────────────────── v2.1.1
Installed Bijectors ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed AbstractMCMC ──────────────── v0.1.0
Installed Hexagons ──────────────────── v0.2.0
Installed LazyArrays ────────────────── v0.14.10
Installed VersionParsing ────────────── v1.1.3
Installed IndirectArrays ────────────── v0.5.0
Installed LogDensityProblems ────────── v0.9.2
Installed Distances ─────────────────── v0.8.2
Installed ColorTypes ────────────────── v0.8.0
Installed ZygoteRules ───────────────── v0.2.0
Installed MacroTools ────────────────── v0.5.2
Installed PositiveFactorizations ────── v0.2.3
Installed AxisArrays ────────────────── v0.3.3
Installed SpecialFunctions ──────────── v0.8.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed BinDeps ───────────────────── v0.8.10
Installed ProgressMeter ─────────────── v1.2.0
Installed Arpack ────────────────────── v0.3.1
Installed Optim ─────────────────────── v0.19.5
Updating `~/.julia/environments/v1.2/Project.toml`
[ebbdde9d] + DiffEqBayes v2.2.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[80f14c24] + AbstractMCMC v0.1.0
[79e6a3ab] + Adapt v1.0.0
[0bf59076] + AdvancedHMC v0.2.14
[f5f396d3] + ApproxBayes v0.3.1
[dce04be8] + ArgCheck v1.0.1
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
[76274a88] + Bijectors v0.4.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[159f3aea] + Cairo v0.8.0
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.7.0
[ebbdde9d] + DiffEqBayes v2.2.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ced4e74d] + DistributionsAD v0.1.1
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[7a1cc6ca] + FFTW v1.0.1
[1a297f60] + FillArrays v0.8.2
[26cc04aa] + FiniteDifferences v0.9.0
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[c91e804a] + Gadfly v1.0.1
[a2bd30eb] + Graphics v0.4.0
[a1b4810d] + Hexagons v0.2.0
[7869d1d1] + IRTools v0.3.0
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[505f98c9] + InplaceOps v0.3.0
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
[2ee39098] + LabelledArrays v1.0.0
[5078a376] + LazyArrays v0.14.10
[6f1fad26] + Libtask v0.3.1
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[6fdf6af0] + LogDensityProblems v0.9.2
[c7f686f2] + MCMCChains v0.4.0
[1914dd2f] + MacroTools v0.5.2
[5424a776] + Mamba v0.12.2
[dbb5928d] + MappedArrays v0.2.2
[442fdcdd] + Measures v0.3.0
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[d41bc354] + NLSolversBase v7.5.0
[872c559c] + NNlib v0.6.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[65888b18] + ParameterizedFunctions v4.2.1
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[f2b01f46] + Roots v0.8.3
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[09ab397b] + StructArrays v0.4.0
[123dc426] + SymEngine v0.7.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[a759f4b9] + TimerOutputs v0.5.3
[9f7883ad] + Tracker v0.2.5
[84d833dd] + TransformVariables v0.3.8
[a2a6695c] + TreeViews v0.3.0
[fce5fe82] + Turing v0.7.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[efce3f68] + WoodburyMatrices v0.4.1
[e88e6eb3] + Zygote v0.4.1
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building SymEngine ───────→ `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building Cairo ───────────→ `~/.julia/packages/Cairo/ZbzIH/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing DiffEqBayes
Resolving package versions...
Installed NamedArrays ────────── v0.9.3
Installed ExponentialUtilities ─ v1.5.1
Installed NearestNeighbors ───── v0.4.4
Installed SteadyStateDiffEq ──── v1.5.0
Installed Plots ──────────────── v0.28.2
Installed OrdinaryDiffEq ─────── v5.25.0
Installed CmdStan ────────────── v5.2.3
Installed Widgets ────────────── v0.6.2
Installed GenericSVD ─────────── v0.2.2
Installed Observables ────────── v0.2.3
Installed VertexSafeGraphs ───── v0.1.0
Installed FilePathsBase ──────── v0.7.0
Installed Homebrew ───────────── v0.7.1
Installed WeakRefStrings ─────── v0.6.1
Installed FFMPEG ─────────────── v0.2.3
Installed MultivariateStats ──── v0.7.0
Installed SparseDiffTools ────── v1.0.0
Installed StatsPlots ─────────── v0.13.0
Installed GeometryTypes ──────── v0.7.6
Installed DataValues ─────────── v0.4.12
Installed Documenter ─────────── v0.24.2
Installed NLsolve ────────────── v4.2.0
Installed CSV ────────────────── v0.5.18
Installed PlotUtils ──────────── v0.6.1
Installed DiffEqCallbacks ────── v2.10.0
Installed PlotThemes ─────────── v1.0.0
Installed Clustering ─────────── v0.13.3
Installed GR ─────────────────── v0.44.0
Building GR ──────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Homebrew → `~/.julia/packages/Homebrew/s09IX/deps/build.log`
Building CmdStan ─→ `~/.julia/packages/CmdStan/2cHgp/deps/build.log`
Status `/tmp/jl_NVOUGI/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[80f14c24] AbstractMCMC v0.1.0
[79e6a3ab] Adapt v1.0.0
[0bf59076] AdvancedHMC v0.2.14
[f5f396d3] ApproxBayes v0.3.1
[dce04be8] ArgCheck v1.0.1
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[76274a88] Bijectors v0.4.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[159f3aea] Cairo v0.8.0
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[593b3428] CmdStan v5.2.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[ebbdde9d] DiffEqBayes v2.2.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ced4e74d] DistributionsAD v0.1.1
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.2
[bbc10e6e] DynamicHMC v2.1.1
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[26cc04aa] FiniteDifferences v0.9.0
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[c91e804a] Gadfly v1.0.1
[01680d73] GenericSVD v0.2.2
[4d00f742] GeometryTypes v0.7.6
[a2bd30eb] Graphics v0.4.0
[a1b4810d] Hexagons v0.2.0
[d9be37ee] Homebrew v0.7.1
[7869d1d1] IRTools v0.3.0
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[2ee39098] LabelledArrays v1.0.0
[5078a376] LazyArrays v0.14.10
[6f1fad26] Libtask v0.3.1
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.4.0
[1914dd2f] MacroTools v0.5.2
[5424a776] Mamba v0.12.2
[dbb5928d] MappedArrays v0.2.2
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[6f286f6a] MultivariateStats v0.7.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[872c559c] NNlib v0.6.0
[77ba4419] NaNMath v0.3.3
[86f7a689] NamedArrays v0.9.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[90014a1f] PDMats v0.9.10
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.13.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[09ab397b] StructArrays v0.4.0
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a759f4b9] TimerOutputs v0.5.3
[9f7883ad] Tracker v0.2.5
[84d833dd] TransformVariables v0.3.8
[a2a6695c] TreeViews v0.3.0
[fce5fe82] Turing v0.7.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[e88e6eb3] Zygote v0.4.1
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Resolving package versions...
[ Info: Loading DataFrames support into Gadfly.jl
┌ Warning: Error requiring LogDensityProblems from Turing:
│ UndefVarError: AbstractLogDensityProblem not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:144
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::getfield(Turing, Symbol("##7#11")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::getfield(Turing, Symbol("##7#11")), ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #6 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::getfield(Turing, Symbol("##6#10")), ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::getfield(Turing, Symbol("##5#9")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [12] invokelatest at ./essentials.jl:789 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},getfield(Requires, Symbol("##3#4"))}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:619
│ [16] map at ./array.jl:548 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [19] invokelatest at ./essentials.jl:789 [inlined]
│ [20] _tryrequire_from_serialized(::Base.PkgId, ::UInt64, ::Nothing) at ./loading.jl:703
│ [21] _require_from_serialized(::String) at ./loading.jl:731
│ [22] _require(::Base.PkgId) at ./loading.jl:1023
│ [23] require(::Base.PkgId) at ./loading.jl:911
│ [24] require(::Module, ::Symbol) at ./loading.jl:906
│ [25] include at ./boot.jl:328 [inlined]
│ [26] include_relative(::Module, ::String) at ./loading.jl:1094
│ [27] include(::Module, ::String) at ./Base.jl:31
│ [28] include(::String) at ./client.jl:431
│ [29] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [30] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
│ [31] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [32] top-level scope at util.jl:156
│ [33] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [34] top-level scope at util.jl:156
│ [35] include at ./boot.jl:328 [inlined]
│ [36] include_relative(::Module, ::String) at ./loading.jl:1094
│ [37] include(::Module, ::String) at ./Base.jl:31
│ [38] include(::String) at ./client.jl:431
│ [39] top-level scope at none:5
│ [40] eval(::Module, ::Any) at ./boot.jl:330
│ [41] exec_options(::Base.JLOptions) at ./client.jl:271
│ [42] _start() at ./client.jl:464
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
┌ Warning: Error requiring DynamicHMC from Turing:
│ UndefVarError: NUTS_init_tune_mcmc not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:161
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::getfield(Turing, Symbol("##15#19")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::getfield(Turing, Symbol("##15#19")), ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #14 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::getfield(Turing, Symbol("##14#18")), ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::getfield(Turing, Symbol("##13#17")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [12] invokelatest at ./essentials.jl:789 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},getfield(Requires, Symbol("##3#4"))}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:619
│ [16] map at ./array.jl:548 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [19] invokelatest at ./essentials.jl:789 [inlined]
│ [20] require(::Base.PkgId) at ./loading.jl:914
│ [21] require(::Module, ::Symbol) at ./loading.jl:906
│ [22] include at ./boot.jl:328 [inlined]
│ [23] include_relative(::Module, ::String) at ./loading.jl:1094
│ [24] include(::Module, ::String) at ./Base.jl:31
│ [25] include(::String) at ./client.jl:431
│ [26] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [27] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
│ [28] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [29] top-level scope at util.jl:156
│ [30] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [31] top-level scope at util.jl:156
│ [32] include at ./boot.jl:328 [inlined]
│ [33] include_relative(::Module, ::String) at ./loading.jl:1094
│ [34] include(::Module, ::String) at ./Base.jl:31
│ [35] include(::String) at ./client.jl:431
│ [36] top-level scope at none:5
│ [37] eval(::Module, ::Any) at ./boot.jl:330
│ [38] exec_options(::Base.JLOptions) at ./client.jl:271
│ [39] _start() at ./client.jl:464
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.000488
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0049
│ estimated_seconds_left = 0.37
└ ϵ = 0.000488
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.11
│ estimated_seconds_left = 2.7
└ ϵ = 0.000144
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.020469007966455392, 0.20506268073114467, 0.045769370376661324]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.12
│ estimated_seconds_left = 6.1
└ ϵ = 0.000169
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.045521894213411684, 0.18136613939121995, 0.1439517700105969]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.00033
│ estimated_seconds_left = 0.033
└ ϵ = 0.00788
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.04844478546211293, 0.21665054241956266, 0.28040702377576593]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.00035
│ estimated_seconds_left = 0.07
└ ϵ = 0.00446
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.094
│ estimated_seconds_left = 9.3
└ ϵ = 0.00332
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.03370579540634641, 0.21317160679225963, 0.29141101562917915]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.02
│ estimated_seconds_left = 8.0
└ ϵ = 0.00461
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.087
│ estimated_seconds_left = 26.0
└ ϵ = 0.00548
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.078
│ estimated_seconds_left = 15.0
└ ϵ = 0.00561
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.064
│ estimated_seconds_left = 6.3
└ ϵ = 0.00445
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.028910437511195642, 0.2621242368555575, 0.25857657997786776]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.019
│ estimated_seconds_left = 0.92
└ ϵ = 0.0073
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.038
└ estimated_seconds_left = 38.0
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.073
└ estimated_seconds_left = 66.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.09
└ estimated_seconds_left = 72.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.081
└ estimated_seconds_left = 56.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.07
└ estimated_seconds_left = 42.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.071
└ estimated_seconds_left = 35.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.074
└ estimated_seconds_left = 29.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.064
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.063
└ estimated_seconds_left = 13.0
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.066
└ estimated_seconds_left = 6.6
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.000183
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.1
│ estimated_seconds_left = 7.5
└ ϵ = 0.000183
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.01
│ estimated_seconds_left = 0.24
└ ϵ = 0.000199
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.014187425795484645, 0.014267582061016543, 0.01424015443916069, 0.014234716315460133, 0.14164959727305665, 0.1119866026483852]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.18
│ estimated_seconds_left = 8.9
└ ϵ = 0.000163
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.010120819290114082, 0.010607793572051178, 0.010226529338286381, 0.010280455552649916, 0.1835609519237439, 0.34899254265770774]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.012
│ estimated_seconds_left = 1.2
└ ϵ = 0.00925
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0071948042423727225, 0.0075302238562622486, 0.007311115987160159, 0.007387144755807429, 0.23854638666420983, 0.27172801222684667]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.044
│ estimated_seconds_left = 8.8
└ ϵ = 0.0139
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.053
│ estimated_seconds_left = 5.2
└ ϵ = 0.0122
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.005171555560314527, 0.005537325073174338, 0.005335895783618348, 0.005399666492871185, 0.2779831581501173, 0.26634107619934816]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.022
│ estimated_seconds_left = 8.8
└ ϵ = 0.0227
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.041
│ estimated_seconds_left = 12.0
└ ϵ = 0.0229
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.033
│ estimated_seconds_left = 6.6
└ ϵ = 0.0362
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.026
│ estimated_seconds_left = 2.6
└ ϵ = 0.0218
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0037419704212547375, 0.004110753635058851, 0.0039590294876753, 0.004044904243304321, 0.2516809809817955, 0.2710783111401347]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.014
│ estimated_seconds_left = 0.69
└ ϵ = 0.0313
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0068
└ estimated_seconds_left = 6.8
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.03
└ estimated_seconds_left = 27.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.025
└ estimated_seconds_left = 20.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.027
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.026
└ estimated_seconds_left = 15.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.026
└ estimated_seconds_left = 13.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.025
└ estimated_seconds_left = 10.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.025
└ estimated_seconds_left = 7.4
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.026
└ estimated_seconds_left = 5.2
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.024
└ estimated_seconds_left = 2.3
Test Summary: | Pass Broken Total
DynamicHMC | 2 2 4
539.964814 seconds (1.09 G allocations: 82.465 GiB, 6.76% gc time)
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ CmdStan ~/.julia/packages/CmdStan/2cHgp/src/CmdStan.jl:27
Starting the test
Test Summary: | Pass Total
Stan_String | 50 50
74.091075 seconds (4.40 M allocations: 229.269 MiB, 0.26% gc time)
One parameter case
File /root/.julia/packages/DiffEqBayes/UDoWn/test/tmp/parameter_estimation_model.stan will be updated.
Stan: Error During Test at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
Got exception outside of a @test
LoadError: IOError: chdir : no such file or directory (ENOENT)
Stacktrace:
[1] uv_error at ./libuv.jl:90 [inlined]
[2] cd(::String) at ./file.jl:76
[3] cd(::getfield(CmdStan, Symbol("##6#9")){Bool,Stanmodel}, ::String) at ./file.jl:95
[4] #stan#4(::Type, ::Bool, ::Bool, ::String, ::Bool, ::Bool, ::typeof(stan), ::Stanmodel, ::Array{Dict{String,Any},1}, ::String) at /root/.julia/packages/CmdStan/2cHgp/src/main/stancode.jl:106
[5] #stan at ./none:0 [inlined] (repeats 2 times)
[6] #stan_inference#53(::Symbol, ::Int64, ::Int64, ::Float64, ::Float64, ::Int64, ::Type, ::Tuple{DiffEqBayes.StanODEData,InverseGamma{Float64}}, ::Int64, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},getfield(Main, Symbol("##394")){getfield(Main, Symbol("##29#33")),getfield(Main, Symbol("##30#34")),getfield(Main, Symbol("##31#35")),Nothing,Nothing,getfield(Main, Symbol("##32#36")),Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at /root/.julia/packages/DiffEqBayes/UDoWn/src/stan_inference.jl:140
[7] (::getfield(DiffEqBayes, Symbol("#kw##stan_inference")))(::NamedTuple{(:num_samples, :num_warmup, :likelihood),Tuple{Int64,Int64,UnionAll}}, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},getfield(Main, Symbol("##394")){getfield(Main, Symbol("##29#33")),getfield(Main, Symbol("##30#34")),getfield(Main, Symbol("##31#35")),Nothing,Nothing,getfield(Main, Symbol("##32#36")),Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at ./none:0
[8] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1094
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:431
[13] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[14] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[15] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[16] top-level scope at util.jl:156
[17] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[18] top-level scope at util.jl:156
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
Test Summary: | Error Total
Stan | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:4
ERROR: Package DiffEqBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 33 minutes, 27 seconds.
Click here to download the log file.
▸ Click here to show the log contents.
Resolving package versions...
Installed AxisAlgorithms ────────────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Cairo_jll ─────────────────── v1.16.0+2
Installed Libgpg_error_jll ──────────── v1.36.0+0
Installed DiffEqBayes ───────────────── v2.2.0
Installed LogDensityProblems ────────── v0.9.2
Installed StaticArrays ──────────────── v0.12.1
Installed CategoricalArrays ─────────── v0.7.3
Installed ProgressMeter ─────────────── v1.2.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Pango_jll ─────────────────── v1.42.4+7
Installed Rmath ─────────────────────── v0.5.1
Installed IndirectArrays ────────────── v0.5.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed PCRE_jll ──────────────────── v8.42.0+1
Installed Expat_jll ─────────────────── v2.2.7+0
Installed CommonSubexpressions ──────── v0.2.0
Installed JSON ──────────────────────── v0.21.0
Installed InplaceOps ────────────────── v0.3.0
Installed RecipesBase ───────────────── v0.7.0
Installed Calculus ──────────────────── v0.5.1
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Libtask ───────────────────── v0.3.1
Installed Adapt ─────────────────────── v1.0.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Libffi_jll ────────────────── v3.2.1+0
Installed Measures ──────────────────── v0.3.0
Installed Xorg_xproto_jll ───────────── v7.0.31+0
Installed FillArrays ────────────────── v0.8.2
Installed Fontconfig_jll ────────────── v2.13.1+7
Installed StatsBase ─────────────────── v0.32.0
Installed Xorg_libpthread_stubs_jll ─── v0.1.0+0
Installed AxisArrays ────────────────── v0.3.3
Installed LazyArrays ────────────────── v0.14.10
Installed FiniteDifferences ─────────── v0.9.0
Installed KernelDensity ─────────────── v0.5.1
Installed Tracker ───────────────────── v0.2.5
Installed DataStructures ────────────── v0.17.6
Installed FFTW ──────────────────────── v1.0.1
Installed InvertedIndices ───────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Compat ────────────────────── v2.2.0
Installed Pixman_jll ────────────────── v0.38.4+1
Installed TreeViews ─────────────────── v0.3.0
Installed Turing ────────────────────── v0.7.1
Installed Distributions ─────────────── v0.21.9
Installed Xorg_xcb_proto_jll ────────── v1.13.0+0
Installed TableTraits ───────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed Xorg_xextproto_jll ────────── v7.3.0+0
Installed SpecialFunctions ──────────── v0.8.0
Installed Showoff ───────────────────── v0.3.1
Installed StructArrays ──────────────── v0.4.0
Installed Gadfly ────────────────────── v1.0.1
Installed BinDeps ───────────────────── v0.8.10
Installed Xorg_renderproto_jll ──────── v0.11.1+0
Installed Distances ─────────────────── v0.8.2
Installed ColorTypes ────────────────── v0.8.0
Installed Libgcrypt_jll ─────────────── v1.8.5+0
Installed DynamicHMC ────────────────── v2.1.1
Installed DiffRules ─────────────────── v0.1.0
Installed Xorg_kbproto_jll ──────────── v1.0.7+0
Installed Conda ─────────────────────── v1.3.0
Installed Requires ──────────────────── v0.5.2
Installed Mamba ─────────────────────── v0.12.2
Installed ArrayInterface ────────────── v2.0.0
Installed XSLT_jll ──────────────────── v1.1.33+0
Installed OffsetArrays ──────────────── v0.11.2
Installed SimpleTraits ──────────────── v0.9.1
Installed FreeType2_jll ─────────────── v2.10.1+1
Installed Xorg_util_macros_jll ──────── v1.19.2+0
Installed PDMats ────────────────────── v0.9.10
Installed Xorg_inputproto_jll ───────── v2.3.2+0
Installed SymEngine ─────────────────── v0.7.0
Installed DiffEqBase ────────────────── v6.7.0
Installed FriBidi_jll ───────────────── v1.0.5+2
Installed URIParser ─────────────────── v0.4.0
Installed NNlib ─────────────────────── v0.6.0
Installed Xorg_libX11_jll ───────────── v1.6.8+0
Installed X11_jll ───────────────────── v1.6.8+4
Installed Roots ─────────────────────── v0.8.3
Installed Juno ──────────────────────── v0.7.2
Installed LineSearches ──────────────── v7.0.1
Installed DocStringExtensions ───────── v0.8.1
Installed QuadGK ────────────────────── v2.1.1
Installed StatsFuns ─────────────────── v0.9.0
Installed Libuuid_jll ───────────────── v2.34.0+3
Installed Xorg_libXau_jll ───────────── v1.0.9+0
Installed Xorg_libXext_jll ──────────── v1.3.4+0
Installed ParameterizedFunctions ────── v4.2.1
Installed MacroTools ────────────────── v0.5.2
Installed Combinatorics ─────────────── v1.0.0
Installed Gettext_jll ───────────────── v0.20.1+0
Installed Bijectors ─────────────────── v0.4.0
Installed IntervalSets ──────────────── v0.3.2
Installed OrderedCollections ────────── v1.1.0
Installed Libiconv_jll ──────────────── v1.16.0+0
Installed ArgCheck ──────────────────── v1.0.1
Installed TransformVariables ────────── v0.3.8
Installed HarfBuzz_jll ──────────────── v2.6.1+4
Installed DataAPI ───────────────────── v1.1.0
Installed Xorg_libXdmcp_jll ─────────── v1.1.3+0
Installed Tables ────────────────────── v0.2.11
Installed ForwardDiff ───────────────── v0.10.7
Installed LightGraphs ───────────────── v1.3.0
Installed IRTools ───────────────────── v0.3.0
Installed Interpolations ────────────── v0.12.5
Installed Optim ─────────────────────── v0.19.5
Installed Inflate ───────────────────── v0.1.1
Installed Graphite2_jll ─────────────── v1.3.13+1
Installed Graphics ──────────────────── v0.4.0
Installed Colors ────────────────────── v0.9.6
Installed Zlib_jll ──────────────────── v1.2.11+7
Installed VersionParsing ────────────── v1.1.3
Installed Glib_jll ──────────────────── v2.59.0+1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed RecursiveFactorization ────── v0.1.0
Installed PooledArrays ──────────────── v0.5.2
Installed MappedArrays ──────────────── v0.2.2
Installed WoodburyMatrices ──────────── v0.4.1
Installed DataFrames ────────────────── v0.19.4
Installed BenchmarkTools ────────────── v0.4.3
Installed Ratios ────────────────────── v0.3.1
Installed Arpack ────────────────────── v0.3.1
Installed Xorg_xtrans_jll ───────────── v1.4.0+0
Installed LZO_jll ───────────────────── v2.10.0+0
Installed DiffResults ───────────────── v0.0.4
Installed Cairo ─────────────────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed Compose ───────────────────── v0.7.3
Installed MCMCChains ────────────────── v0.4.0
Installed Parsers ───────────────────── v0.3.10
Installed Missings ──────────────────── v0.4.3
Installed Hexagons ──────────────────── v0.2.0
Installed IterTools ─────────────────── v1.3.0
Installed RangeArrays ───────────────── v0.3.1
Installed Loess ─────────────────────── v0.5.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed PositiveFactorizations ────── v0.2.3
Installed AbstractMCMC ──────────────── v0.1.0
Installed TimerOutputs ──────────────── v0.5.3
Installed LabelledArrays ────────────── v1.0.0
Installed ApproxBayes ───────────────── v0.3.1
Installed AdvancedHMC ───────────────── v0.2.14
Installed DataValueInterfaces ───────── v1.0.0
Installed Polynomials ───────────────── v0.6.0
Installed DistributionsAD ───────────── v0.1.1
Installed NaNMath ───────────────────── v0.3.3
Installed Xorg_libXrender_jll ───────── v0.9.10+0
Installed Xorg_libxcb_jll ───────────── v1.13.0+0
Installed Zygote ────────────────────── v0.4.1
Installed XML2_jll ──────────────────── v2.9.9+0
Installed MuladdMacro ───────────────── v0.2.1
Installed Bzip2_jll ─────────────────── v1.0.6+1
Installed Contour ───────────────────── v0.5.1
Installed libpng_jll ────────────────── v1.6.37+2
Installed IterativeSolvers ──────────── v0.8.1
Installed CoupledFields ─────────────── v0.1.0
Installed Media ─────────────────────── v0.5.0
Installed ZygoteRules ───────────────── v0.2.0
Installed AbstractFFTs ──────────────── v0.4.1
Installed Reexport ──────────────────── v0.2.0
Installed RecursiveArrayTools ───────── v1.2.0
Updating `~/.julia/environments/v1.3/Project.toml`
[ebbdde9d] + DiffEqBayes v2.2.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[80f14c24] + AbstractMCMC v0.1.0
[79e6a3ab] + Adapt v1.0.0
[0bf59076] + AdvancedHMC v0.2.14
[f5f396d3] + ApproxBayes v0.3.1
[dce04be8] + ArgCheck v1.0.1
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
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[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
[76274a88] + Bijectors v0.4.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[6e34b625] + Bzip2_jll v1.0.6+1
[159f3aea] + Cairo v1.0.0
[83423d85] + Cairo_jll v1.16.0+2
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
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[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
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[ebbdde9d] + DiffEqBayes v2.2.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ced4e74d] + DistributionsAD v0.1.1
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[2e619515] + Expat_jll v2.2.7+0
[7a1cc6ca] + FFTW v1.0.1
[1a297f60] + FillArrays v0.8.2
[26cc04aa] + FiniteDifferences v0.9.0
[53c48c17] + FixedPointNumbers v0.6.1
[a3f928ae] + Fontconfig_jll v2.13.1+7
[f6369f11] + ForwardDiff v0.10.7
[d7e528f0] + FreeType2_jll v2.10.1+1
[559328eb] + FriBidi_jll v1.0.5+2
[069b7b12] + FunctionWrappers v1.0.0
[c91e804a] + Gadfly v1.0.1
[78b55507] + Gettext_jll v0.20.1+0
[7746bdde] + Glib_jll v2.59.0+1
[a2bd30eb] + Graphics v0.4.0
[3b182d85] + Graphite2_jll v1.3.13+1
[2e76f6c2] + HarfBuzz_jll v2.6.1+4
[a1b4810d] + Hexagons v0.2.0
[7869d1d1] + IRTools v0.3.0
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[505f98c9] + InplaceOps v0.3.0
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
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[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
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[5078a376] + LazyArrays v0.14.10
[e9f186c6] + Libffi_jll v3.2.1+0
[d4300ac3] + Libgcrypt_jll v1.8.5+0
[7add5ba3] + Libgpg_error_jll v1.36.0+0
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[38a345b3] + Libuuid_jll v2.34.0+3
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[6fdf6af0] + LogDensityProblems v0.9.2
[c7f686f2] + MCMCChains v0.4.0
[1914dd2f] + MacroTools v0.5.2
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[46d2c3a1] + MuladdMacro v0.2.1
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[6fe1bfb0] + OffsetArrays v0.11.2
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[fce5fe82] + Turing v0.7.1
[30578b45] + URIParser v0.4.0
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[efce3f68] + WoodburyMatrices v0.4.1
[546b0b6d] + X11_jll v1.6.8+4
[02c8fc9c] + XML2_jll v2.9.9+0
[aed1982a] + XSLT_jll v1.1.33+0
[84d6cd60] + Xorg_inputproto_jll v2.3.2+0
[060dd47b] + Xorg_kbproto_jll v1.0.7+0
[4f6342f7] + Xorg_libX11_jll v1.6.8+0
[0c0b7dd1] + Xorg_libXau_jll v1.0.9+0
[a3789734] + Xorg_libXdmcp_jll v1.1.3+0
[1082639a] + Xorg_libXext_jll v1.3.4+0
[ea2f1a96] + Xorg_libXrender_jll v0.9.10+0
[14d82f49] + Xorg_libpthread_stubs_jll v0.1.0+0
[c7cfdc94] + Xorg_libxcb_jll v1.13.0+0
[21e99dc2] + Xorg_renderproto_jll v0.11.1+0
[7c09cfe3] + Xorg_util_macros_jll v1.19.2+0
[c2e9c405] + Xorg_xcb_proto_jll v1.13.0+0
[d13bc2ba] + Xorg_xextproto_jll v7.3.0+0
[46797783] + Xorg_xproto_jll v7.0.31+0
[c5fb5394] + Xorg_xtrans_jll v1.4.0+0
[83775a58] + Zlib_jll v1.2.11+7
[e88e6eb3] + Zygote v0.4.1
[700de1a5] + ZygoteRules v0.2.0
[b53b4c65] + libpng_jll v1.6.37+2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building SymEngine ───────→ `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing DiffEqBayes
Resolving package versions...
Installed SteadyStateDiffEq ──── v1.5.0
Installed NamedArrays ────────── v0.9.3
Installed Homebrew ───────────── v0.7.1
Installed Plots ──────────────── v0.28.2
Installed Documenter ─────────── v0.24.2
Installed StatsPlots ─────────── v0.13.0
Installed CmdStan ────────────── v5.2.3
Installed MultivariateStats ──── v0.7.0
Installed OrdinaryDiffEq ─────── v5.25.0
Installed Observables ────────── v0.2.3
Installed FilePathsBase ──────── v0.7.0
Installed PlotThemes ─────────── v1.0.0
Installed DiffEqCallbacks ────── v2.10.0
Installed VertexSafeGraphs ───── v0.1.0
Installed GenericSVD ─────────── v0.2.2
Installed NLsolve ────────────── v4.2.0
Installed NearestNeighbors ───── v0.4.4
Installed DataValues ─────────── v0.4.12
Installed Widgets ────────────── v0.6.2
Installed WeakRefStrings ─────── v0.6.1
Installed FFMPEG ─────────────── v0.2.3
Installed CSV ────────────────── v0.5.18
Installed GeometryTypes ──────── v0.7.6
Installed Clustering ─────────── v0.13.3
Installed ExponentialUtilities ─ v1.5.1
Installed PlotUtils ──────────── v0.6.1
Installed GR ─────────────────── v0.44.0
Installed SparseDiffTools ────── v1.0.0
Building GR ──────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Homebrew → `~/.julia/packages/Homebrew/s09IX/deps/build.log`
Building CmdStan ─→ `~/.julia/packages/CmdStan/2cHgp/deps/build.log`
Status `/tmp/jl_91m2fV/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[80f14c24] AbstractMCMC v0.1.0
[79e6a3ab] Adapt v1.0.0
[0bf59076] AdvancedHMC v0.2.14
[f5f396d3] ApproxBayes v0.3.1
[dce04be8] ArgCheck v1.0.1
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[76274a88] Bijectors v0.4.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[6e34b625] Bzip2_jll v1.0.6+1
[336ed68f] CSV v0.5.18
[159f3aea] Cairo v1.0.0
[83423d85] Cairo_jll v1.16.0+2
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[593b3428] CmdStan v5.2.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[ebbdde9d] DiffEqBayes v2.2.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ced4e74d] DistributionsAD v0.1.1
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.2
[bbc10e6e] DynamicHMC v2.1.1
[2e619515] Expat_jll v2.2.7+0
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[26cc04aa] FiniteDifferences v0.9.0
[53c48c17] FixedPointNumbers v0.6.1
[a3f928ae] Fontconfig_jll v2.13.1+7
[f6369f11] ForwardDiff v0.10.7
[d7e528f0] FreeType2_jll v2.10.1+1
[559328eb] FriBidi_jll v1.0.5+2
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[c91e804a] Gadfly v1.0.1
[01680d73] GenericSVD v0.2.2
[4d00f742] GeometryTypes v0.7.6
[78b55507] Gettext_jll v0.20.1+0
[7746bdde] Glib_jll v2.59.0+1
[a2bd30eb] Graphics v0.4.0
[3b182d85] Graphite2_jll v1.3.13+1
[2e76f6c2] HarfBuzz_jll v2.6.1+4
[a1b4810d] Hexagons v0.2.0
[d9be37ee] Homebrew v0.7.1
[7869d1d1] IRTools v0.3.0
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[dd4b983a] LZO_jll v2.10.0+0
[2ee39098] LabelledArrays v1.0.0
[5078a376] LazyArrays v0.14.10
[e9f186c6] Libffi_jll v3.2.1+0
[d4300ac3] Libgcrypt_jll v1.8.5+0
[7add5ba3] Libgpg_error_jll v1.36.0+0
[94ce4f54] Libiconv_jll v1.16.0+0
[6f1fad26] Libtask v0.3.1
[38a345b3] Libuuid_jll v2.34.0+3
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.4.0
[1914dd2f] MacroTools v0.5.2
[5424a776] Mamba v0.12.2
[dbb5928d] MappedArrays v0.2.2
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[6f286f6a] MultivariateStats v0.7.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[872c559c] NNlib v0.6.0
[77ba4419] NaNMath v0.3.3
[86f7a689] NamedArrays v0.9.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[2f80f16e] PCRE_jll v8.42.0+1
[90014a1f] PDMats v0.9.10
[36c8627f] Pango_jll v1.42.4+7
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[30392449] Pixman_jll v0.38.4+1
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.13.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[09ab397b] StructArrays v0.4.0
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a759f4b9] TimerOutputs v0.5.3
[9f7883ad] Tracker v0.2.5
[84d833dd] TransformVariables v0.3.8
[a2a6695c] TreeViews v0.3.0
[fce5fe82] Turing v0.7.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[546b0b6d] X11_jll v1.6.8+4
[02c8fc9c] XML2_jll v2.9.9+0
[aed1982a] XSLT_jll v1.1.33+0
[84d6cd60] Xorg_inputproto_jll v2.3.2+0
[060dd47b] Xorg_kbproto_jll v1.0.7+0
[4f6342f7] Xorg_libX11_jll v1.6.8+0
[0c0b7dd1] Xorg_libXau_jll v1.0.9+0
[a3789734] Xorg_libXdmcp_jll v1.1.3+0
[1082639a] Xorg_libXext_jll v1.3.4+0
[ea2f1a96] Xorg_libXrender_jll v0.9.10+0
[14d82f49] Xorg_libpthread_stubs_jll v0.1.0+0
[c7cfdc94] Xorg_libxcb_jll v1.13.0+0
[21e99dc2] Xorg_renderproto_jll v0.11.1+0
[7c09cfe3] Xorg_util_macros_jll v1.19.2+0
[c2e9c405] Xorg_xcb_proto_jll v1.13.0+0
[d13bc2ba] Xorg_xextproto_jll v7.3.0+0
[46797783] Xorg_xproto_jll v7.0.31+0
[c5fb5394] Xorg_xtrans_jll v1.4.0+0
[83775a58] Zlib_jll v1.2.11+7
[e88e6eb3] Zygote v0.4.1
[700de1a5] ZygoteRules v0.2.0
[b53b4c65] libpng_jll v1.6.37+2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Resolving package versions...
[ Info: Loading DataFrames support into Gadfly.jl
┌ Warning: Error requiring LogDensityProblems from Turing:
│ UndefVarError: AbstractLogDensityProblem not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:144
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::Turing.var"#7#11")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::Turing.var"#7#11", ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #6 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::Turing.var"#6#10", ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::Turing.var"#5#9")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [12] invokelatest at ./essentials.jl:708 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},Requires.var"#3#4"}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:635
│ [16] map at ./array.jl:564 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [19] invokelatest at ./essentials.jl:708 [inlined]
│ [20] _tryrequire_from_serialized(::Base.PkgId, ::UInt64, ::Nothing) at ./loading.jl:710
│ [21] _require_from_serialized(::String) at ./loading.jl:738
│ [22] _require(::Base.PkgId) at ./loading.jl:1034
│ [23] require(::Base.PkgId) at ./loading.jl:922
│ [24] require(::Module, ::Symbol) at ./loading.jl:917
│ [25] include at ./boot.jl:328 [inlined]
│ [26] include_relative(::Module, ::String) at ./loading.jl:1105
│ [27] include(::Module, ::String) at ./Base.jl:31
│ [28] include(::String) at ./client.jl:424
│ [29] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [30] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
│ [31] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [32] top-level scope at util.jl:155
│ [33] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [34] top-level scope at util.jl:155
│ [35] include at ./boot.jl:328 [inlined]
│ [36] include_relative(::Module, ::String) at ./loading.jl:1105
│ [37] include(::Module, ::String) at ./Base.jl:31
│ [38] include(::String) at ./client.jl:424
│ [39] top-level scope at none:6
│ [40] eval(::Module, ::Any) at ./boot.jl:330
│ [41] exec_options(::Base.JLOptions) at ./client.jl:263
│ [42] _start() at ./client.jl:460
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
┌ Warning: Error requiring DynamicHMC from Turing:
│ UndefVarError: NUTS_init_tune_mcmc not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:161
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::Turing.var"#15#19")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::Turing.var"#15#19", ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #14 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::Turing.var"#14#18", ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::Turing.var"#13#17")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [12] invokelatest at ./essentials.jl:708 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},Requires.var"#3#4"}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:635
│ [16] map at ./array.jl:564 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [19] invokelatest at ./essentials.jl:708 [inlined]
│ [20] require(::Base.PkgId) at ./loading.jl:925
│ [21] require(::Module, ::Symbol) at ./loading.jl:917
│ [22] include at ./boot.jl:328 [inlined]
│ [23] include_relative(::Module, ::String) at ./loading.jl:1105
│ [24] include(::Module, ::String) at ./Base.jl:31
│ [25] include(::String) at ./client.jl:424
│ [26] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [27] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
│ [28] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [29] top-level scope at util.jl:155
│ [30] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [31] top-level scope at util.jl:155
│ [32] include at ./boot.jl:328 [inlined]
│ [33] include_relative(::Module, ::String) at ./loading.jl:1105
│ [34] include(::Module, ::String) at ./Base.jl:31
│ [35] include(::String) at ./client.jl:424
│ [36] top-level scope at none:6
│ [37] eval(::Module, ::Any) at ./boot.jl:330
│ [38] exec_options(::Base.JLOptions) at ./client.jl:263
│ [39] _start() at ./client.jl:460
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.0625
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0056
│ estimated_seconds_left = 0.41
└ ϵ = 0.0625
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0019
│ estimated_seconds_left = 0.046
└ ϵ = 0.0523
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.594257313643447, 0.2434131325445107, 0.2443248567869337]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0066
│ estimated_seconds_left = 0.33
└ ϵ = 0.0534
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.07817349819146047, 0.2238492078630247, 0.20611958783676448]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.014
│ estimated_seconds_left = 1.3
└ ϵ = 0.0421
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.19832531573439321, 0.29058394506768576, 0.23663611950370717]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0011
│ estimated_seconds_left = 0.22
└ ϵ = 0.627
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.085
│ estimated_seconds_left = 8.5
└ ϵ = 0.000672
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.5015584486187264, 2.1870024599649383, 2.1177750273676605]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.00019
│ estimated_seconds_left = 0.074
└ ϵ = 0.00148
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.086
│ estimated_seconds_left = 26.0
└ ϵ = 0.000271
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.13
│ estimated_seconds_left = 25.0
└ ϵ = 0.00031
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.13
│ estimated_seconds_left = 13.0
└ ϵ = 0.000477
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.026631137758898818, 0.2599490966165619, 0.23819098895000948]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.11
│ estimated_seconds_left = 5.2
└ ϵ = 0.000474
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.052
└ estimated_seconds_left = 52.0
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.11
└ estimated_seconds_left = 96.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.099
└ estimated_seconds_left = 79.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.069
└ estimated_seconds_left = 48.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.08
└ estimated_seconds_left = 48.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.094
└ estimated_seconds_left = 47.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.083
└ estimated_seconds_left = 33.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.11
└ estimated_seconds_left = 31.0
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.097
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.099
└ estimated_seconds_left = 9.8
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.000244
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0065
│ estimated_seconds_left = 0.48
└ ϵ = 0.000244
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0037
│ estimated_seconds_left = 0.09
└ ϵ = 0.000142
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.014152840113673834, 0.014200924975668916, 0.014162296664257957, 0.014174169555231252, 0.05085774265837743, 0.06861771604348915]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.2
│ estimated_seconds_left = 9.8
└ ϵ = 0.000113
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.010056519943992828, 0.010159830502529386, 0.010124644136739518, 0.010128003887114654, 0.20948569688042512, 0.2804251056246331]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.014
│ estimated_seconds_left = 1.4
└ ϵ = 0.00904
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.007174049743741852, 0.007353616632430656, 0.007276314856014794, 0.007322860785092499, 0.27330500101728666, 0.2877723950904979]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.045
│ estimated_seconds_left = 8.9
└ ϵ = 0.0126
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.055
│ estimated_seconds_left = 5.5
└ ϵ = 0.0256
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.005195172401400295, 0.005431617060250777, 0.005380672490262237, 0.0054560764020869104, 0.24297158968173316, 0.2904860138136647]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.022
│ estimated_seconds_left = 8.9
└ ϵ = 0.0202
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.046
│ estimated_seconds_left = 14.0
└ ϵ = 0.0168
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.039
│ estimated_seconds_left = 7.7
└ ϵ = 0.0411
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.034
│ estimated_seconds_left = 3.3
└ ϵ = 0.0403
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0037035497639162037, 0.003956525804623411, 0.003881288150678323, 0.003931235861600747, 0.2663117948636502, 0.263517144033961]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.012
│ estimated_seconds_left = 0.61
└ ϵ = 0.0274
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.021
└ estimated_seconds_left = 21.0
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.036
└ estimated_seconds_left = 32.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.035
└ estimated_seconds_left = 28.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.033
└ estimated_seconds_left = 23.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.032
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.033
└ estimated_seconds_left = 16.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.037
└ estimated_seconds_left = 15.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.04
└ estimated_seconds_left = 12.0
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.034
└ estimated_seconds_left = 6.8
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.034
└ estimated_seconds_left = 3.4
Test Summary: | Pass Broken Total
DynamicHMC | 2 2 4
592.769010 seconds (1.12 G allocations: 85.533 GiB, 5.07% gc time)
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ CmdStan ~/.julia/packages/CmdStan/2cHgp/src/CmdStan.jl:27
Starting the test
Test Summary: | Pass Total
Stan_String | 50 50
67.070615 seconds (4.31 M allocations: 219.603 MiB, 0.19% gc time)
One parameter case
File /root/.julia/packages/DiffEqBayes/UDoWn/test/tmp/parameter_estimation_model.stan will be updated.
Stan: Error During Test at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
Got exception outside of a @test
LoadError: IOError: chdir : no such file or directory (ENOENT)
Stacktrace:
[1] uv_error at ./libuv.jl:97 [inlined]
[2] cd(::String) at ./file.jl:84
[3] cd(::CmdStan.var"#6#9"{Bool,Stanmodel}, ::String) at ./file.jl:103
[4] #stan#4(::Type, ::Bool, ::Bool, ::String, ::Bool, ::Bool, ::typeof(stan), ::Stanmodel, ::Array{Dict{String,Any},1}, ::String) at /root/.julia/packages/CmdStan/2cHgp/src/main/stancode.jl:106
[5] #stan at ./none:0 [inlined] (repeats 2 times)
[6] #stan_inference#53(::Symbol, ::Int64, ::Int64, ::Float64, ::Float64, ::Int64, ::Type, ::Tuple{DiffEqBayes.StanODEData,InverseGamma{Float64}}, ::Int64, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},var"##425"{var"#29#33",var"#30#34",var"#31#35",Nothing,Nothing,var"#32#36",Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at /root/.julia/packages/DiffEqBayes/UDoWn/src/stan_inference.jl:140
[7] (::DiffEqBayes.var"#kw##stan_inference")(::NamedTuple{(:num_samples, :num_warmup, :likelihood),Tuple{Int64,Int64,UnionAll}}, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},var"##425"{var"#29#33",var"#30#34",var"#31#35",Nothing,Nothing,var"#32#36",Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at ./none:0
[8] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[14] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[15] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[16] top-level scope at util.jl:155
[17] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[18] top-level scope at util.jl:155
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
Test Summary: | Error Total
Stan | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:4
ERROR: Package DiffEqBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 51 seconds.
Click here to download the log file.
▸ Click here to show the log contents.
Resolving package versions...
Installed IndirectArrays ────────────── v0.5.0
Installed Xorg_xproto_jll ───────────── v7.0.31+0
Installed Xorg_xextproto_jll ────────── v7.3.0+0
Installed Xorg_libXau_jll ───────────── v1.0.9+0
Installed DiffEqBayes ───────────────── v2.2.0
Installed LabelledArrays ────────────── v1.0.0
Installed Optim ─────────────────────── v0.19.5
Installed LightGraphs ───────────────── v1.3.0
Installed NaNMath ───────────────────── v0.3.3
Installed Libgcrypt_jll ─────────────── v1.8.5+0
Installed Adapt ─────────────────────── v1.0.0
Installed Xorg_libXrender_jll ───────── v0.9.10+0
Installed DataStructures ────────────── v0.17.6
Installed Xorg_libX11_jll ───────────── v1.6.8+0
Installed Bijectors ─────────────────── v0.4.0
Installed Compose ───────────────────── v0.7.3
Installed Xorg_xtrans_jll ───────────── v1.4.0+0
Installed Roots ─────────────────────── v0.8.3
Installed ForwardDiff ───────────────── v0.10.7
Installed Showoff ───────────────────── v0.3.1
Installed LineSearches ──────────────── v7.0.1
Installed Calculus ──────────────────── v0.5.1
Installed AxisAlgorithms ────────────── v1.0.0
Installed Fontconfig_jll ────────────── v2.13.1+7
Installed FFTW ──────────────────────── v1.0.1
Installed Rmath ─────────────────────── v0.5.1
Installed BinaryProvider ────────────── v0.5.8
Installed AdvancedHMC ───────────────── v0.2.14
Installed InvertedIndices ───────────── v1.0.0
Installed Pango_jll ─────────────────── v1.42.4+7
Installed Libiconv_jll ──────────────── v1.16.0+0
Installed Reexport ──────────────────── v0.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed Combinatorics ─────────────── v1.0.0
Installed Bzip2_jll ─────────────────── v1.0.6+1
Installed ArnoldiMethod ─────────────── v0.0.4
Installed OrderedCollections ────────── v1.1.0
Installed Xorg_renderproto_jll ──────── v0.11.1+0
Installed Juno ──────────────────────── v0.7.2
Installed TimerOutputs ──────────────── v0.5.3
Installed Pixman_jll ────────────────── v0.38.4+1
Installed Interpolations ────────────── v0.12.5
Installed DistributionsAD ───────────── v0.1.1
Installed Expat_jll ─────────────────── v2.2.7+0
Installed Ratios ────────────────────── v0.3.1
Installed Xorg_libXdmcp_jll ─────────── v1.1.3+0
Installed ArrayLayouts ──────────────── v0.1.5
Installed Hexagons ──────────────────── v0.2.0
Installed LogDensityProblems ────────── v0.9.2
Installed SymEngine ─────────────────── v0.7.0
Installed Polynomials ───────────────── v0.6.0
Installed ZygoteRules ───────────────── v0.2.0
Installed URIParser ─────────────────── v0.4.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Libtask ───────────────────── v0.3.1
Installed CommonSubexpressions ──────── v0.2.0
Installed Missings ──────────────────── v0.4.3
Installed FreeType2_jll ─────────────── v2.10.1+1
Installed Mamba ─────────────────────── v0.12.2
Installed TransformVariables ────────── v0.3.8
Installed Xorg_kbproto_jll ──────────── v1.0.7+0
Installed Media ─────────────────────── v0.5.0
Installed DocStringExtensions ───────── v0.8.1
Installed DiffRules ─────────────────── v0.1.0
Installed NNlib ─────────────────────── v0.6.0
Installed HarfBuzz_jll ──────────────── v2.6.1+4
Installed DynamicHMC ────────────────── v2.1.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed XML2_jll ──────────────────── v2.9.9+0
Installed ArrayInterface ────────────── v2.0.0
Installed RangeArrays ───────────────── v0.3.1
Installed JSON ──────────────────────── v0.21.0
Installed Distributions ─────────────── v0.21.9
Installed Xorg_xcb_proto_jll ────────── v1.13.0+0
Installed MCMCChains ────────────────── v0.4.0
Installed Cairo_jll ─────────────────── v1.16.0+2
Installed SortingAlgorithms ─────────── v0.3.1
Installed StructArrays ──────────────── v0.4.0
Installed FriBidi_jll ───────────────── v1.0.5+2
Installed ColorTypes ────────────────── v0.8.0
Installed FiniteDifferences ─────────── v0.9.0
Installed Gadfly ────────────────────── v1.0.1
Installed Zygote ────────────────────── v0.4.1
Installed Conda ─────────────────────── v1.3.0
Installed Xorg_inputproto_jll ───────── v2.3.2+0
Installed QuadGK ────────────────────── v2.1.1
Installed Xorg_libpthread_stubs_jll ─── v0.1.0+0
Installed ApproxBayes ───────────────── v0.3.1
Installed BenchmarkTools ────────────── v0.4.3
Installed DataFrames ────────────────── v0.19.4
Installed SpecialFunctions ──────────── v0.8.0
Installed BinDeps ───────────────────── v0.8.10
Installed DiffResults ───────────────── v0.0.4
Installed FixedPointNumbers ─────────── v0.6.1
Installed Arpack ────────────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed Libgpg_error_jll ──────────── v1.36.0+0
Installed AxisArrays ────────────────── v0.3.3
Installed MacroTools ────────────────── v0.5.2
Installed MuladdMacro ───────────────── v0.2.1
Installed Graphite2_jll ─────────────── v1.3.13+1
Installed StatsFuns ─────────────────── v0.9.0
Installed ProgressMeter ─────────────── v1.2.0
Installed Parameters ────────────────── v0.12.0
Installed Zlib_jll ──────────────────── v1.2.11+7
Installed InplaceOps ────────────────── v0.3.0
Installed LZO_jll ───────────────────── v2.10.0+0
Installed AbstractFFTs ──────────────── v0.4.1
Installed CoupledFields ─────────────── v0.1.0
Installed SimpleTraits ──────────────── v0.9.1
Installed Glib_jll ──────────────────── v2.59.0+1
Installed PositiveFactorizations ────── v0.2.3
Installed RecipesBase ───────────────── v0.7.0
Installed Tracker ───────────────────── v0.2.5
Installed Contour ───────────────────── v0.5.1
Installed DataAPI ───────────────────── v1.1.0
Installed DiffEqBase ────────────────── v6.7.0
Installed Libuuid_jll ───────────────── v2.34.0+3
Installed Parsers ───────────────────── v0.3.10
Installed XSLT_jll ──────────────────── v1.1.33+0
Installed PDMats ────────────────────── v0.9.10
Installed Xorg_libxcb_jll ───────────── v1.13.0+0
Installed IRTools ───────────────────── v0.3.0
Installed Turing ────────────────────── v0.7.1
Installed TreeViews ─────────────────── v0.3.0
Installed Colors ────────────────────── v0.9.6
Installed Graphics ──────────────────── v0.4.0
Installed Xorg_libXext_jll ──────────── v1.3.4+0
Installed Tables ────────────────────── v0.2.11
Installed X11_jll ───────────────────── v1.6.8+4
Installed IterativeSolvers ──────────── v0.8.1
Installed ParameterizedFunctions ────── v4.2.1
Installed LazyArrays ────────────────── v0.14.10
Installed Compat ────────────────────── v2.2.0
Installed ArgCheck ──────────────────── v1.0.1
Installed StaticArrays ──────────────── v0.12.1
Installed Inflate ───────────────────── v0.1.1
Installed MappedArrays ──────────────── v0.2.2
Installed libpng_jll ────────────────── v1.6.37+2
Installed IterTools ─────────────────── v1.3.0
Installed StatsBase ─────────────────── v0.32.0
Installed FillArrays ────────────────── v0.8.2
Installed OffsetArrays ──────────────── v0.11.2
Installed Cairo ─────────────────────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed Measures ──────────────────── v0.3.0
Installed AbstractMCMC ──────────────── v0.1.0
Installed NLSolversBase ─────────────── v7.5.0
Installed IntervalSets ──────────────── v0.3.2
Installed Distances ─────────────────── v0.8.2
Installed Xorg_util_macros_jll ──────── v1.19.2+0
Installed PCRE_jll ──────────────────── v8.42.0+1
Installed KernelDensity ─────────────── v0.5.1
Installed RecursiveFactorization ────── v0.1.0
Installed CategoricalArrays ─────────── v0.7.3
Installed Loess ─────────────────────── v0.5.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed VersionParsing ────────────── v1.1.3
Installed Libffi_jll ────────────────── v3.2.1+0
Installed Gettext_jll ───────────────── v0.20.1+0
┌ Error: Tree Hash Mismatch!
│ Expected git-tree-sha1: e80d1b7446d31c7738ed51fda764944d4bf1fcbe
│ Calculated git-tree-sha1: b37f6296f6e49bb2d602909f058cefbac9cdaa6e
└ @ Pkg.Artifacts /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Artifacts.jl:775
ERROR: Unable to automatically install 'FreeType2' from '/root/.julia/packages/FreeType2_jll/BxhKx/Artifacts.toml'
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] #ensure_artifact_installed#42(::Pkg.BinaryPlatforms.Linux, ::Bool, ::typeof(Pkg.Artifacts.ensure_artifact_installed), ::String, ::Dict{String,Any}, ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Artifacts.jl:867
[3] (::Pkg.Artifacts.var"#kw##ensure_artifact_installed")(::NamedTuple{(:platform, :verbose),Tuple{Pkg.BinaryPlatforms.Linux,Bool}}, ::typeof(Pkg.Artifacts.ensure_artifact_installed), ::String, ::Dict{String,Any}, ::String) at ./none:0
[4] #ensure_all_artifacts_installed#43(::Pkg.BinaryPlatforms.Linux, ::Nothing, ::Bool, ::Bool, ::typeof(Pkg.Artifacts.ensure_all_artifacts_installed), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Artifacts.jl:912
[5] #ensure_all_artifacts_installed at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:0 [inlined]
[6] #download_artifacts#78(::Pkg.BinaryPlatforms.Linux, ::Bool, ::typeof(Pkg.Operations.download_artifacts), ::Array{String,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:580
[7] #download_artifacts at ./none:0 [inlined]
[8] #download_artifacts#73(::Pkg.BinaryPlatforms.Linux, ::Bool, ::typeof(Pkg.Operations.download_artifacts), ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:570
[9] (::Pkg.Operations.var"#kw##download_artifacts")(::NamedTuple{(:platform,),Tuple{Pkg.BinaryPlatforms.Linux}}, ::typeof(Pkg.Operations.download_artifacts), ::Array{Pkg.Types.PackageSpec,1}) at ./none:0
[10] #add#112(::Bool, ::Pkg.BinaryPlatforms.Linux, ::typeof(Pkg.Operations.add), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1017
[11] #add at ./none:0 [inlined]
[12] #add#25(::Bool, ::Pkg.BinaryPlatforms.Linux, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.add), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:102
[13] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:72
[14] #add#24 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:69 [inlined]
[15] add at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:69 [inlined]
[16] #add#21 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:67 [inlined]
[17] add at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:67 [inlined]
[18] #add#20(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.add), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:66
[19] add(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:66
[20] top-level scope at none:9