If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 27 minutes, 48 seconds.
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Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Missings ──────────────────── v0.4.3
Installed Showoff ───────────────────── v0.3.1
Installed Inflate ───────────────────── v0.1.1
Installed DiffEqBayes ───────────────── v2.2.0
Installed ApproxBayes ───────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed DataFrames ────────────────── v0.19.4
Installed DistributionsAD ───────────── v0.1.1
Installed BinaryProvider ────────────── v0.5.8
Installed Contour ───────────────────── v0.5.1
Installed LineSearches ──────────────── v7.0.1
Installed AbstractFFTs ──────────────── v0.4.1
Installed CoupledFields ─────────────── v0.1.0
Installed PDMats ────────────────────── v0.9.10
Installed Colors ────────────────────── v0.9.6
Installed Conda ─────────────────────── v1.3.0
Installed StatsBase ─────────────────── v0.32.0
Installed FiniteDifferences ─────────── v0.9.0
Installed RangeArrays ───────────────── v0.3.1
Installed CommonSubexpressions ──────── v0.2.0
Installed Measures ──────────────────── v0.3.0
Installed Tracker ───────────────────── v0.2.5
Installed ArrayLayouts ──────────────── v0.1.5
Installed StatsFuns ─────────────────── v0.9.0
Installed DiffEqBase ────────────────── v6.7.0
Installed Adapt ─────────────────────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed Polynomials ───────────────── v0.6.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed DocStringExtensions ───────── v0.8.1
Installed IRTools ───────────────────── v0.3.0
Installed SymEngine ─────────────────── v0.7.0
Installed NLSolversBase ─────────────── v7.5.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Zygote ────────────────────── v0.4.1
Installed PooledArrays ──────────────── v0.5.2
Installed Requires ──────────────────── v0.5.2
Installed InplaceOps ────────────────── v0.3.0
Installed Mamba ─────────────────────── v0.12.2
Installed Compose ───────────────────── v0.7.3
Installed Reexport ──────────────────── v0.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed TimerOutputs ──────────────── v0.5.3
Installed Libtask ───────────────────── v0.3.1
Installed Compat ────────────────────── v2.2.0
Installed FunctionWrappers ──────────── v1.0.0
Installed ForwardDiff ───────────────── v0.10.7
Installed OffsetArrays ──────────────── v0.11.2
Installed Rmath ─────────────────────── v0.5.1
Installed OrderedCollections ────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed NNlib ─────────────────────── v0.6.0
Installed StructArrays ──────────────── v0.4.0
Installed Loess ─────────────────────── v0.5.0
Installed Calculus ──────────────────── v0.5.1
Installed AdvancedHMC ───────────────── v0.2.14
Installed KernelDensity ─────────────── v0.5.1
Installed IterTools ─────────────────── v1.3.0
Installed Roots ─────────────────────── v0.8.3
Installed MappedArrays ──────────────── v0.2.2
Installed Combinatorics ─────────────── v1.0.0
Installed Gadfly ────────────────────── v1.0.1
Installed RecipesBase ───────────────── v0.7.0
Installed TreeViews ─────────────────── v0.3.0
Installed DataStructures ────────────── v0.17.6
Installed ArgCheck ──────────────────── v1.0.1
Installed DynamicHMC ────────────────── v2.1.1
Installed Turing ────────────────────── v0.7.1
Installed Distributions ─────────────── v0.21.9
Installed IterativeSolvers ──────────── v0.8.1
Installed FixedPointNumbers ─────────── v0.6.1
Installed Parsers ───────────────────── v0.3.10
Installed LightGraphs ───────────────── v1.3.0
Installed FillArrays ────────────────── v0.8.2
Installed DiffEqDiffTools ───────────── v1.5.0
Installed TransformVariables ────────── v0.3.8
Installed DiffRules ─────────────────── v0.1.0
Installed RecursiveFactorization ────── v0.1.0
Installed Cairo ─────────────────────── v0.8.0
Installed Ratios ────────────────────── v0.3.1
Installed Media ─────────────────────── v0.5.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed Graphics ──────────────────── v0.4.0
Installed JSON ──────────────────────── v0.21.0
Installed ArrayInterface ────────────── v2.0.0
Installed Interpolations ────────────── v0.12.5
Installed Juno ──────────────────────── v0.7.2
Installed NaNMath ───────────────────── v0.3.3
Installed StaticArrays ──────────────── v0.12.1
Installed MCMCChains ────────────────── v0.4.0
Installed LabelledArrays ────────────── v1.0.0
Installed DiffResults ───────────────── v0.0.4
Installed ParameterizedFunctions ────── v4.2.1
Installed MuladdMacro ───────────────── v0.2.1
Installed Parameters ────────────────── v0.12.0
Installed SimpleTraits ──────────────── v0.9.1
Installed BenchmarkTools ────────────── v0.4.3
Installed IntervalSets ──────────────── v0.3.2
Installed FFTW ──────────────────────── v1.0.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed WoodburyMatrices ──────────── v0.4.1
Installed QuadGK ────────────────────── v2.1.1
Installed Bijectors ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed AbstractMCMC ──────────────── v0.1.0
Installed Hexagons ──────────────────── v0.2.0
Installed LazyArrays ────────────────── v0.14.10
Installed VersionParsing ────────────── v1.1.3
Installed IndirectArrays ────────────── v0.5.0
Installed LogDensityProblems ────────── v0.9.2
Installed Distances ─────────────────── v0.8.2
Installed ColorTypes ────────────────── v0.8.0
Installed ZygoteRules ───────────────── v0.2.0
Installed MacroTools ────────────────── v0.5.2
Installed PositiveFactorizations ────── v0.2.3
Installed AxisArrays ────────────────── v0.3.3
Installed SpecialFunctions ──────────── v0.8.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed BinDeps ───────────────────── v0.8.10
Installed ProgressMeter ─────────────── v1.2.0
Installed Arpack ────────────────────── v0.3.1
Installed Optim ─────────────────────── v0.19.5
Updating `~/.julia/environments/v1.2/Project.toml`
[ebbdde9d] + DiffEqBayes v2.2.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[80f14c24] + AbstractMCMC v0.1.0
[79e6a3ab] + Adapt v1.0.0
[0bf59076] + AdvancedHMC v0.2.14
[f5f396d3] + ApproxBayes v0.3.1
[dce04be8] + ArgCheck v1.0.1
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
[76274a88] + Bijectors v0.4.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[159f3aea] + Cairo v0.8.0
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.7.0
[ebbdde9d] + DiffEqBayes v2.2.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ced4e74d] + DistributionsAD v0.1.1
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[7a1cc6ca] + FFTW v1.0.1
[1a297f60] + FillArrays v0.8.2
[26cc04aa] + FiniteDifferences v0.9.0
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[069b7b12] + FunctionWrappers v1.0.0
[c91e804a] + Gadfly v1.0.1
[a2bd30eb] + Graphics v0.4.0
[a1b4810d] + Hexagons v0.2.0
[7869d1d1] + IRTools v0.3.0
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[505f98c9] + InplaceOps v0.3.0
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
[2ee39098] + LabelledArrays v1.0.0
[5078a376] + LazyArrays v0.14.10
[6f1fad26] + Libtask v0.3.1
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[6fdf6af0] + LogDensityProblems v0.9.2
[c7f686f2] + MCMCChains v0.4.0
[1914dd2f] + MacroTools v0.5.2
[5424a776] + Mamba v0.12.2
[dbb5928d] + MappedArrays v0.2.2
[442fdcdd] + Measures v0.3.0
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[d41bc354] + NLSolversBase v7.5.0
[872c559c] + NNlib v0.6.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.2
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[65888b18] + ParameterizedFunctions v4.2.1
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.1.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[f2b01f46] + Roots v0.8.3
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[09ab397b] + StructArrays v0.4.0
[123dc426] + SymEngine v0.7.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[a759f4b9] + TimerOutputs v0.5.3
[9f7883ad] + Tracker v0.2.5
[84d833dd] + TransformVariables v0.3.8
[a2a6695c] + TreeViews v0.3.0
[fce5fe82] + Turing v0.7.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[efce3f68] + WoodburyMatrices v0.4.1
[e88e6eb3] + Zygote v0.4.1
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building SymEngine ───────→ `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building Cairo ───────────→ `~/.julia/packages/Cairo/ZbzIH/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing DiffEqBayes
Resolving package versions...
Installed NamedArrays ────────── v0.9.3
Installed ExponentialUtilities ─ v1.5.1
Installed NearestNeighbors ───── v0.4.4
Installed SteadyStateDiffEq ──── v1.5.0
Installed Plots ──────────────── v0.28.2
Installed OrdinaryDiffEq ─────── v5.25.0
Installed CmdStan ────────────── v5.2.3
Installed Widgets ────────────── v0.6.2
Installed GenericSVD ─────────── v0.2.2
Installed Observables ────────── v0.2.3
Installed VertexSafeGraphs ───── v0.1.0
Installed FilePathsBase ──────── v0.7.0
Installed Homebrew ───────────── v0.7.1
Installed WeakRefStrings ─────── v0.6.1
Installed FFMPEG ─────────────── v0.2.3
Installed MultivariateStats ──── v0.7.0
Installed SparseDiffTools ────── v1.0.0
Installed StatsPlots ─────────── v0.13.0
Installed GeometryTypes ──────── v0.7.6
Installed DataValues ─────────── v0.4.12
Installed Documenter ─────────── v0.24.2
Installed NLsolve ────────────── v4.2.0
Installed CSV ────────────────── v0.5.18
Installed PlotUtils ──────────── v0.6.1
Installed DiffEqCallbacks ────── v2.10.0
Installed PlotThemes ─────────── v1.0.0
Installed Clustering ─────────── v0.13.3
Installed GR ─────────────────── v0.44.0
Building GR ──────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Homebrew → `~/.julia/packages/Homebrew/s09IX/deps/build.log`
Building CmdStan ─→ `~/.julia/packages/CmdStan/2cHgp/deps/build.log`
Status `/tmp/jl_NVOUGI/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[80f14c24] AbstractMCMC v0.1.0
[79e6a3ab] Adapt v1.0.0
[0bf59076] AdvancedHMC v0.2.14
[f5f396d3] ApproxBayes v0.3.1
[dce04be8] ArgCheck v1.0.1
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[76274a88] Bijectors v0.4.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[159f3aea] Cairo v0.8.0
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[593b3428] CmdStan v5.2.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[ebbdde9d] DiffEqBayes v2.2.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ced4e74d] DistributionsAD v0.1.1
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.2
[bbc10e6e] DynamicHMC v2.1.1
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[26cc04aa] FiniteDifferences v0.9.0
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[c91e804a] Gadfly v1.0.1
[01680d73] GenericSVD v0.2.2
[4d00f742] GeometryTypes v0.7.6
[a2bd30eb] Graphics v0.4.0
[a1b4810d] Hexagons v0.2.0
[d9be37ee] Homebrew v0.7.1
[7869d1d1] IRTools v0.3.0
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[2ee39098] LabelledArrays v1.0.0
[5078a376] LazyArrays v0.14.10
[6f1fad26] Libtask v0.3.1
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.4.0
[1914dd2f] MacroTools v0.5.2
[5424a776] Mamba v0.12.2
[dbb5928d] MappedArrays v0.2.2
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[6f286f6a] MultivariateStats v0.7.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[872c559c] NNlib v0.6.0
[77ba4419] NaNMath v0.3.3
[86f7a689] NamedArrays v0.9.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[90014a1f] PDMats v0.9.10
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.13.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[09ab397b] StructArrays v0.4.0
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a759f4b9] TimerOutputs v0.5.3
[9f7883ad] Tracker v0.2.5
[84d833dd] TransformVariables v0.3.8
[a2a6695c] TreeViews v0.3.0
[fce5fe82] Turing v0.7.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[e88e6eb3] Zygote v0.4.1
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Resolving package versions...
[ Info: Loading DataFrames support into Gadfly.jl
┌ Warning: Error requiring LogDensityProblems from Turing:
│ UndefVarError: AbstractLogDensityProblem not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:144
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::getfield(Turing, Symbol("##7#11")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::getfield(Turing, Symbol("##7#11")), ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #6 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::getfield(Turing, Symbol("##6#10")), ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::getfield(Turing, Symbol("##5#9")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [12] invokelatest at ./essentials.jl:789 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},getfield(Requires, Symbol("##3#4"))}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:619
│ [16] map at ./array.jl:548 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [19] invokelatest at ./essentials.jl:789 [inlined]
│ [20] _tryrequire_from_serialized(::Base.PkgId, ::UInt64, ::Nothing) at ./loading.jl:703
│ [21] _require_from_serialized(::String) at ./loading.jl:731
│ [22] _require(::Base.PkgId) at ./loading.jl:1023
│ [23] require(::Base.PkgId) at ./loading.jl:911
│ [24] require(::Module, ::Symbol) at ./loading.jl:906
│ [25] include at ./boot.jl:328 [inlined]
│ [26] include_relative(::Module, ::String) at ./loading.jl:1094
│ [27] include(::Module, ::String) at ./Base.jl:31
│ [28] include(::String) at ./client.jl:431
│ [29] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [30] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
│ [31] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [32] top-level scope at util.jl:156
│ [33] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [34] top-level scope at util.jl:156
│ [35] include at ./boot.jl:328 [inlined]
│ [36] include_relative(::Module, ::String) at ./loading.jl:1094
│ [37] include(::Module, ::String) at ./Base.jl:31
│ [38] include(::String) at ./client.jl:431
│ [39] top-level scope at none:5
│ [40] eval(::Module, ::Any) at ./boot.jl:330
│ [41] exec_options(::Base.JLOptions) at ./client.jl:271
│ [42] _start() at ./client.jl:464
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
┌ Warning: Error requiring DynamicHMC from Turing:
│ UndefVarError: NUTS_init_tune_mcmc not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:161
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::getfield(Turing, Symbol("##15#19")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::getfield(Turing, Symbol("##15#19")), ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #14 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::getfield(Turing, Symbol("##14#18")), ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::getfield(Turing, Symbol("##13#17")))() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [12] invokelatest at ./essentials.jl:789 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},getfield(Requires, Symbol("##3#4"))}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:619
│ [16] map at ./array.jl:548 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:790 [inlined]
│ [19] invokelatest at ./essentials.jl:789 [inlined]
│ [20] require(::Base.PkgId) at ./loading.jl:914
│ [21] require(::Module, ::Symbol) at ./loading.jl:906
│ [22] include at ./boot.jl:328 [inlined]
│ [23] include_relative(::Module, ::String) at ./loading.jl:1094
│ [24] include(::Module, ::String) at ./Base.jl:31
│ [25] include(::String) at ./client.jl:431
│ [26] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [27] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
│ [28] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [29] top-level scope at util.jl:156
│ [30] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [31] top-level scope at util.jl:156
│ [32] include at ./boot.jl:328 [inlined]
│ [33] include_relative(::Module, ::String) at ./loading.jl:1094
│ [34] include(::Module, ::String) at ./Base.jl:31
│ [35] include(::String) at ./client.jl:431
│ [36] top-level scope at none:5
│ [37] eval(::Module, ::Any) at ./boot.jl:330
│ [38] exec_options(::Base.JLOptions) at ./client.jl:271
│ [39] _start() at ./client.jl:464
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.000488
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0049
│ estimated_seconds_left = 0.37
└ ϵ = 0.000488
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.11
│ estimated_seconds_left = 2.7
└ ϵ = 0.000144
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.020469007966455392, 0.20506268073114467, 0.045769370376661324]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.12
│ estimated_seconds_left = 6.1
└ ϵ = 0.000169
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.045521894213411684, 0.18136613939121995, 0.1439517700105969]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.00033
│ estimated_seconds_left = 0.033
└ ϵ = 0.00788
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.04844478546211293, 0.21665054241956266, 0.28040702377576593]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.00035
│ estimated_seconds_left = 0.07
└ ϵ = 0.00446
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.094
│ estimated_seconds_left = 9.3
└ ϵ = 0.00332
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.03370579540634641, 0.21317160679225963, 0.29141101562917915]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.02
│ estimated_seconds_left = 8.0
└ ϵ = 0.00461
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.087
│ estimated_seconds_left = 26.0
└ ϵ = 0.00548
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.078
│ estimated_seconds_left = 15.0
└ ϵ = 0.00561
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.064
│ estimated_seconds_left = 6.3
└ ϵ = 0.00445
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.028910437511195642, 0.2621242368555575, 0.25857657997786776]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.019
│ estimated_seconds_left = 0.92
└ ϵ = 0.0073
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.038
└ estimated_seconds_left = 38.0
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.073
└ estimated_seconds_left = 66.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.09
└ estimated_seconds_left = 72.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.081
└ estimated_seconds_left = 56.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.07
└ estimated_seconds_left = 42.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.071
└ estimated_seconds_left = 35.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.074
└ estimated_seconds_left = 29.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.064
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.063
└ estimated_seconds_left = 13.0
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.066
└ estimated_seconds_left = 6.6
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.000183
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.1
│ estimated_seconds_left = 7.5
└ ϵ = 0.000183
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.01
│ estimated_seconds_left = 0.24
└ ϵ = 0.000199
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.014187425795484645, 0.014267582061016543, 0.01424015443916069, 0.014234716315460133, 0.14164959727305665, 0.1119866026483852]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.18
│ estimated_seconds_left = 8.9
└ ϵ = 0.000163
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.010120819290114082, 0.010607793572051178, 0.010226529338286381, 0.010280455552649916, 0.1835609519237439, 0.34899254265770774]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.012
│ estimated_seconds_left = 1.2
└ ϵ = 0.00925
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0071948042423727225, 0.0075302238562622486, 0.007311115987160159, 0.007387144755807429, 0.23854638666420983, 0.27172801222684667]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.044
│ estimated_seconds_left = 8.8
└ ϵ = 0.0139
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.053
│ estimated_seconds_left = 5.2
└ ϵ = 0.0122
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.005171555560314527, 0.005537325073174338, 0.005335895783618348, 0.005399666492871185, 0.2779831581501173, 0.26634107619934816]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.022
│ estimated_seconds_left = 8.8
└ ϵ = 0.0227
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.041
│ estimated_seconds_left = 12.0
└ ϵ = 0.0229
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.033
│ estimated_seconds_left = 6.6
└ ϵ = 0.0362
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.026
│ estimated_seconds_left = 2.6
└ ϵ = 0.0218
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0037419704212547375, 0.004110753635058851, 0.0039590294876753, 0.004044904243304321, 0.2516809809817955, 0.2710783111401347]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.014
│ estimated_seconds_left = 0.69
└ ϵ = 0.0313
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0068
└ estimated_seconds_left = 6.8
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.03
└ estimated_seconds_left = 27.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.025
└ estimated_seconds_left = 20.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.027
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.026
└ estimated_seconds_left = 15.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.026
└ estimated_seconds_left = 13.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.025
└ estimated_seconds_left = 10.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.025
└ estimated_seconds_left = 7.4
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.026
└ estimated_seconds_left = 5.2
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.024
└ estimated_seconds_left = 2.3
Test Summary: | Pass Broken Total
DynamicHMC | 2 2 4
539.964814 seconds (1.09 G allocations: 82.465 GiB, 6.76% gc time)
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ CmdStan ~/.julia/packages/CmdStan/2cHgp/src/CmdStan.jl:27
Starting the test
Test Summary: | Pass Total
Stan_String | 50 50
74.091075 seconds (4.40 M allocations: 229.269 MiB, 0.26% gc time)
One parameter case
File /root/.julia/packages/DiffEqBayes/UDoWn/test/tmp/parameter_estimation_model.stan will be updated.
Stan: Error During Test at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
Got exception outside of a @test
LoadError: IOError: chdir : no such file or directory (ENOENT)
Stacktrace:
[1] uv_error at ./libuv.jl:90 [inlined]
[2] cd(::String) at ./file.jl:76
[3] cd(::getfield(CmdStan, Symbol("##6#9")){Bool,Stanmodel}, ::String) at ./file.jl:95
[4] #stan#4(::Type, ::Bool, ::Bool, ::String, ::Bool, ::Bool, ::typeof(stan), ::Stanmodel, ::Array{Dict{String,Any},1}, ::String) at /root/.julia/packages/CmdStan/2cHgp/src/main/stancode.jl:106
[5] #stan at ./none:0 [inlined] (repeats 2 times)
[6] #stan_inference#53(::Symbol, ::Int64, ::Int64, ::Float64, ::Float64, ::Int64, ::Type, ::Tuple{DiffEqBayes.StanODEData,InverseGamma{Float64}}, ::Int64, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},getfield(Main, Symbol("##394")){getfield(Main, Symbol("##29#33")),getfield(Main, Symbol("##30#34")),getfield(Main, Symbol("##31#35")),Nothing,Nothing,getfield(Main, Symbol("##32#36")),Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at /root/.julia/packages/DiffEqBayes/UDoWn/src/stan_inference.jl:140
[7] (::getfield(DiffEqBayes, Symbol("#kw##stan_inference")))(::NamedTuple{(:num_samples, :num_warmup, :likelihood),Tuple{Int64,Int64,UnionAll}}, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},getfield(Main, Symbol("##394")){getfield(Main, Symbol("##29#33")),getfield(Main, Symbol("##30#34")),getfield(Main, Symbol("##31#35")),Nothing,Nothing,getfield(Main, Symbol("##32#36")),Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at ./none:0
[8] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1094
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:431
[13] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[14] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[15] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[16] top-level scope at util.jl:156
[17] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[18] top-level scope at util.jl:156
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1094
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:431
[23] top-level scope at none:5
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:271
[26] _start() at ./client.jl:464
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
Test Summary: | Error Total
Stan | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:4
ERROR: Package DiffEqBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 33 minutes, 27 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed AxisAlgorithms ────────────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Cairo_jll ─────────────────── v1.16.0+2
Installed Libgpg_error_jll ──────────── v1.36.0+0
Installed DiffEqBayes ───────────────── v2.2.0
Installed LogDensityProblems ────────── v0.9.2
Installed StaticArrays ──────────────── v0.12.1
Installed CategoricalArrays ─────────── v0.7.3
Installed ProgressMeter ─────────────── v1.2.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Pango_jll ─────────────────── v1.42.4+7
Installed Rmath ─────────────────────── v0.5.1
Installed IndirectArrays ────────────── v0.5.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed PCRE_jll ──────────────────── v8.42.0+1
Installed Expat_jll ─────────────────── v2.2.7+0
Installed CommonSubexpressions ──────── v0.2.0
Installed JSON ──────────────────────── v0.21.0
Installed InplaceOps ────────────────── v0.3.0
Installed RecipesBase ───────────────── v0.7.0
Installed Calculus ──────────────────── v0.5.1
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Libtask ───────────────────── v0.3.1
Installed Adapt ─────────────────────── v1.0.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Libffi_jll ────────────────── v3.2.1+0
Installed Measures ──────────────────── v0.3.0
Installed Xorg_xproto_jll ───────────── v7.0.31+0
Installed FillArrays ────────────────── v0.8.2
Installed Fontconfig_jll ────────────── v2.13.1+7
Installed StatsBase ─────────────────── v0.32.0
Installed Xorg_libpthread_stubs_jll ─── v0.1.0+0
Installed AxisArrays ────────────────── v0.3.3
Installed LazyArrays ────────────────── v0.14.10
Installed FiniteDifferences ─────────── v0.9.0
Installed KernelDensity ─────────────── v0.5.1
Installed Tracker ───────────────────── v0.2.5
Installed DataStructures ────────────── v0.17.6
Installed FFTW ──────────────────────── v1.0.1
Installed InvertedIndices ───────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Compat ────────────────────── v2.2.0
Installed Pixman_jll ────────────────── v0.38.4+1
Installed TreeViews ─────────────────── v0.3.0
Installed Turing ────────────────────── v0.7.1
Installed Distributions ─────────────── v0.21.9
Installed Xorg_xcb_proto_jll ────────── v1.13.0+0
Installed TableTraits ───────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed Xorg_xextproto_jll ────────── v7.3.0+0
Installed SpecialFunctions ──────────── v0.8.0
Installed Showoff ───────────────────── v0.3.1
Installed StructArrays ──────────────── v0.4.0
Installed Gadfly ────────────────────── v1.0.1
Installed BinDeps ───────────────────── v0.8.10
Installed Xorg_renderproto_jll ──────── v0.11.1+0
Installed Distances ─────────────────── v0.8.2
Installed ColorTypes ────────────────── v0.8.0
Installed Libgcrypt_jll ─────────────── v1.8.5+0
Installed DynamicHMC ────────────────── v2.1.1
Installed DiffRules ─────────────────── v0.1.0
Installed Xorg_kbproto_jll ──────────── v1.0.7+0
Installed Conda ─────────────────────── v1.3.0
Installed Requires ──────────────────── v0.5.2
Installed Mamba ─────────────────────── v0.12.2
Installed ArrayInterface ────────────── v2.0.0
Installed XSLT_jll ──────────────────── v1.1.33+0
Installed OffsetArrays ──────────────── v0.11.2
Installed SimpleTraits ──────────────── v0.9.1
Installed FreeType2_jll ─────────────── v2.10.1+1
Installed Xorg_util_macros_jll ──────── v1.19.2+0
Installed PDMats ────────────────────── v0.9.10
Installed Xorg_inputproto_jll ───────── v2.3.2+0
Installed SymEngine ─────────────────── v0.7.0
Installed DiffEqBase ────────────────── v6.7.0
Installed FriBidi_jll ───────────────── v1.0.5+2
Installed URIParser ─────────────────── v0.4.0
Installed NNlib ─────────────────────── v0.6.0
Installed Xorg_libX11_jll ───────────── v1.6.8+0
Installed X11_jll ───────────────────── v1.6.8+4
Installed Roots ─────────────────────── v0.8.3
Installed Juno ──────────────────────── v0.7.2
Installed LineSearches ──────────────── v7.0.1
Installed DocStringExtensions ───────── v0.8.1
Installed QuadGK ────────────────────── v2.1.1
Installed StatsFuns ─────────────────── v0.9.0
Installed Libuuid_jll ───────────────── v2.34.0+3
Installed Xorg_libXau_jll ───────────── v1.0.9+0
Installed Xorg_libXext_jll ──────────── v1.3.4+0
Installed ParameterizedFunctions ────── v4.2.1
Installed MacroTools ────────────────── v0.5.2
Installed Combinatorics ─────────────── v1.0.0
Installed Gettext_jll ───────────────── v0.20.1+0
Installed Bijectors ─────────────────── v0.4.0
Installed IntervalSets ──────────────── v0.3.2
Installed OrderedCollections ────────── v1.1.0
Installed Libiconv_jll ──────────────── v1.16.0+0
Installed ArgCheck ──────────────────── v1.0.1
Installed TransformVariables ────────── v0.3.8
Installed HarfBuzz_jll ──────────────── v2.6.1+4
Installed DataAPI ───────────────────── v1.1.0
Installed Xorg_libXdmcp_jll ─────────── v1.1.3+0
Installed Tables ────────────────────── v0.2.11
Installed ForwardDiff ───────────────── v0.10.7
Installed LightGraphs ───────────────── v1.3.0
Installed IRTools ───────────────────── v0.3.0
Installed Interpolations ────────────── v0.12.5
Installed Optim ─────────────────────── v0.19.5
Installed Inflate ───────────────────── v0.1.1
Installed Graphite2_jll ─────────────── v1.3.13+1
Installed Graphics ──────────────────── v0.4.0
Installed Colors ────────────────────── v0.9.6
Installed Zlib_jll ──────────────────── v1.2.11+7
Installed VersionParsing ────────────── v1.1.3
Installed Glib_jll ──────────────────── v2.59.0+1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed RecursiveFactorization ────── v0.1.0
Installed PooledArrays ──────────────── v0.5.2
Installed MappedArrays ──────────────── v0.2.2
Installed WoodburyMatrices ──────────── v0.4.1
Installed DataFrames ────────────────── v0.19.4
Installed BenchmarkTools ────────────── v0.4.3
Installed Ratios ────────────────────── v0.3.1
Installed Arpack ────────────────────── v0.3.1
Installed Xorg_xtrans_jll ───────────── v1.4.0+0
Installed LZO_jll ───────────────────── v2.10.0+0
Installed DiffResults ───────────────── v0.0.4
Installed Cairo ─────────────────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed Compose ───────────────────── v0.7.3
Installed MCMCChains ────────────────── v0.4.0
Installed Parsers ───────────────────── v0.3.10
Installed Missings ──────────────────── v0.4.3
Installed Hexagons ──────────────────── v0.2.0
Installed IterTools ─────────────────── v1.3.0
Installed RangeArrays ───────────────── v0.3.1
Installed Loess ─────────────────────── v0.5.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed PositiveFactorizations ────── v0.2.3
Installed AbstractMCMC ──────────────── v0.1.0
Installed TimerOutputs ──────────────── v0.5.3
Installed LabelledArrays ────────────── v1.0.0
Installed ApproxBayes ───────────────── v0.3.1
Installed AdvancedHMC ───────────────── v0.2.14
Installed DataValueInterfaces ───────── v1.0.0
Installed Polynomials ───────────────── v0.6.0
Installed DistributionsAD ───────────── v0.1.1
Installed NaNMath ───────────────────── v0.3.3
Installed Xorg_libXrender_jll ───────── v0.9.10+0
Installed Xorg_libxcb_jll ───────────── v1.13.0+0
Installed Zygote ────────────────────── v0.4.1
Installed XML2_jll ──────────────────── v2.9.9+0
Installed MuladdMacro ───────────────── v0.2.1
Installed Bzip2_jll ─────────────────── v1.0.6+1
Installed Contour ───────────────────── v0.5.1
Installed libpng_jll ────────────────── v1.6.37+2
Installed IterativeSolvers ──────────── v0.8.1
Installed CoupledFields ─────────────── v0.1.0
Installed Media ─────────────────────── v0.5.0
Installed ZygoteRules ───────────────── v0.2.0
Installed AbstractFFTs ──────────────── v0.4.1
Installed Reexport ──────────────────── v0.2.0
Installed RecursiveArrayTools ───────── v1.2.0
Updating `~/.julia/environments/v1.3/Project.toml`
[ebbdde9d] + DiffEqBayes v2.2.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[621f4979] + AbstractFFTs v0.4.1
[80f14c24] + AbstractMCMC v0.1.0
[79e6a3ab] + Adapt v1.0.0
[0bf59076] + AdvancedHMC v0.2.14
[f5f396d3] + ApproxBayes v0.3.1
[dce04be8] + ArgCheck v1.0.1
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
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[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[6e4b80f9] + BenchmarkTools v0.4.3
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[b99e7846] + BinaryProvider v0.5.8
[6e34b625] + Bzip2_jll v1.0.6+1
[159f3aea] + Cairo v1.0.0
[83423d85] + Cairo_jll v1.16.0+2
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
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[5ae59095] + Colors v0.9.6
[861a8166] + Combinatorics v1.0.0
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[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[8f4d0f93] + Conda v1.3.0
[d38c429a] + Contour v0.5.1
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
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[ebbdde9d] + DiffEqBayes v2.2.0
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[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[ced4e74d] + DistributionsAD v0.1.1
[ffbed154] + DocStringExtensions v0.8.1
[bbc10e6e] + DynamicHMC v2.1.1
[2e619515] + Expat_jll v2.2.7+0
[7a1cc6ca] + FFTW v1.0.1
[1a297f60] + FillArrays v0.8.2
[26cc04aa] + FiniteDifferences v0.9.0
[53c48c17] + FixedPointNumbers v0.6.1
[a3f928ae] + Fontconfig_jll v2.13.1+7
[f6369f11] + ForwardDiff v0.10.7
[d7e528f0] + FreeType2_jll v2.10.1+1
[559328eb] + FriBidi_jll v1.0.5+2
[069b7b12] + FunctionWrappers v1.0.0
[c91e804a] + Gadfly v1.0.1
[78b55507] + Gettext_jll v0.20.1+0
[7746bdde] + Glib_jll v2.59.0+1
[a2bd30eb] + Graphics v0.4.0
[3b182d85] + Graphite2_jll v1.3.13+1
[2e76f6c2] + HarfBuzz_jll v2.6.1+4
[a1b4810d] + Hexagons v0.2.0
[7869d1d1] + IRTools v0.3.0
[9b13fd28] + IndirectArrays v0.5.0
[d25df0c9] + Inflate v0.1.1
[505f98c9] + InplaceOps v0.3.0
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[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
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[e5e0dc1b] + Juno v0.7.2
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[e9f186c6] + Libffi_jll v3.2.1+0
[d4300ac3] + Libgcrypt_jll v1.8.5+0
[7add5ba3] + Libgpg_error_jll v1.36.0+0
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[6fdf6af0] + LogDensityProblems v0.9.2
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[6fe1bfb0] + OffsetArrays v0.11.2
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[2f80f16e] + PCRE_jll v8.42.0+1
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[fce5fe82] + Turing v0.7.1
[30578b45] + URIParser v0.4.0
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[efce3f68] + WoodburyMatrices v0.4.1
[546b0b6d] + X11_jll v1.6.8+4
[02c8fc9c] + XML2_jll v2.9.9+0
[aed1982a] + XSLT_jll v1.1.33+0
[84d6cd60] + Xorg_inputproto_jll v2.3.2+0
[060dd47b] + Xorg_kbproto_jll v1.0.7+0
[4f6342f7] + Xorg_libX11_jll v1.6.8+0
[0c0b7dd1] + Xorg_libXau_jll v1.0.9+0
[a3789734] + Xorg_libXdmcp_jll v1.1.3+0
[1082639a] + Xorg_libXext_jll v1.3.4+0
[ea2f1a96] + Xorg_libXrender_jll v0.9.10+0
[14d82f49] + Xorg_libpthread_stubs_jll v0.1.0+0
[c7cfdc94] + Xorg_libxcb_jll v1.13.0+0
[21e99dc2] + Xorg_renderproto_jll v0.11.1+0
[7c09cfe3] + Xorg_util_macros_jll v1.19.2+0
[c2e9c405] + Xorg_xcb_proto_jll v1.13.0+0
[d13bc2ba] + Xorg_xextproto_jll v7.3.0+0
[46797783] + Xorg_xproto_jll v7.0.31+0
[c5fb5394] + Xorg_xtrans_jll v1.4.0+0
[83775a58] + Zlib_jll v1.2.11+7
[e88e6eb3] + Zygote v0.4.1
[700de1a5] + ZygoteRules v0.2.0
[b53b4c65] + libpng_jll v1.6.37+2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building Libtask ─────────→ `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building FFTW ────────────→ `~/.julia/packages/FFTW/MJ7kl/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building SymEngine ───────→ `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing DiffEqBayes
Resolving package versions...
Installed SteadyStateDiffEq ──── v1.5.0
Installed NamedArrays ────────── v0.9.3
Installed Homebrew ───────────── v0.7.1
Installed Plots ──────────────── v0.28.2
Installed Documenter ─────────── v0.24.2
Installed StatsPlots ─────────── v0.13.0
Installed CmdStan ────────────── v5.2.3
Installed MultivariateStats ──── v0.7.0
Installed OrdinaryDiffEq ─────── v5.25.0
Installed Observables ────────── v0.2.3
Installed FilePathsBase ──────── v0.7.0
Installed PlotThemes ─────────── v1.0.0
Installed DiffEqCallbacks ────── v2.10.0
Installed VertexSafeGraphs ───── v0.1.0
Installed GenericSVD ─────────── v0.2.2
Installed NLsolve ────────────── v4.2.0
Installed NearestNeighbors ───── v0.4.4
Installed DataValues ─────────── v0.4.12
Installed Widgets ────────────── v0.6.2
Installed WeakRefStrings ─────── v0.6.1
Installed FFMPEG ─────────────── v0.2.3
Installed CSV ────────────────── v0.5.18
Installed GeometryTypes ──────── v0.7.6
Installed Clustering ─────────── v0.13.3
Installed ExponentialUtilities ─ v1.5.1
Installed PlotUtils ──────────── v0.6.1
Installed GR ─────────────────── v0.44.0
Installed SparseDiffTools ────── v1.0.0
Building GR ──────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Building FFMPEG ──→ `~/.julia/packages/FFMPEG/bkWgb/deps/build.log`
Building Plots ───→ `~/.julia/packages/Plots/2KhB2/deps/build.log`
Building Homebrew → `~/.julia/packages/Homebrew/s09IX/deps/build.log`
Building CmdStan ─→ `~/.julia/packages/CmdStan/2cHgp/deps/build.log`
Status `/tmp/jl_91m2fV/Manifest.toml`
[621f4979] AbstractFFTs v0.4.1
[80f14c24] AbstractMCMC v0.1.0
[79e6a3ab] Adapt v1.0.0
[0bf59076] AdvancedHMC v0.2.14
[f5f396d3] ApproxBayes v0.3.1
[dce04be8] ArgCheck v1.0.1
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.3.3
[6e4b80f9] BenchmarkTools v0.4.3
[76274a88] Bijectors v0.4.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[6e34b625] Bzip2_jll v1.0.6+1
[336ed68f] CSV v0.5.18
[159f3aea] Cairo v1.0.0
[83423d85] Cairo_jll v1.16.0+2
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[aaaa29a8] Clustering v0.13.3
[593b3428] CmdStan v5.2.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[8f4d0f93] Conda v1.3.0
[d38c429a] Contour v0.5.1
[7ad07ef1] CoupledFields v0.1.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[2b5f629d] DiffEqBase v6.7.0
[ebbdde9d] DiffEqBayes v2.2.0
[459566f4] DiffEqCallbacks v2.10.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[ced4e74d] DistributionsAD v0.1.1
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.2
[bbc10e6e] DynamicHMC v2.1.1
[2e619515] Expat_jll v2.2.7+0
[d4d017d3] ExponentialUtilities v1.5.1
[c87230d0] FFMPEG v0.2.3
[7a1cc6ca] FFTW v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[26cc04aa] FiniteDifferences v0.9.0
[53c48c17] FixedPointNumbers v0.6.1
[a3f928ae] Fontconfig_jll v2.13.1+7
[f6369f11] ForwardDiff v0.10.7
[d7e528f0] FreeType2_jll v2.10.1+1
[559328eb] FriBidi_jll v1.0.5+2
[069b7b12] FunctionWrappers v1.0.0
[28b8d3ca] GR v0.44.0
[c91e804a] Gadfly v1.0.1
[01680d73] GenericSVD v0.2.2
[4d00f742] GeometryTypes v0.7.6
[78b55507] Gettext_jll v0.20.1+0
[7746bdde] Glib_jll v2.59.0+1
[a2bd30eb] Graphics v0.4.0
[3b182d85] Graphite2_jll v1.3.13+1
[2e76f6c2] HarfBuzz_jll v2.6.1+4
[a1b4810d] Hexagons v0.2.0
[d9be37ee] Homebrew v0.7.1
[7869d1d1] IRTools v0.3.0
[9b13fd28] IndirectArrays v0.5.0
[d25df0c9] Inflate v0.1.1
[505f98c9] InplaceOps v0.3.0
[a98d9a8b] Interpolations v0.12.5
[8197267c] IntervalSets v0.3.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.7.2
[5ab0869b] KernelDensity v0.5.1
[dd4b983a] LZO_jll v2.10.0+0
[2ee39098] LabelledArrays v1.0.0
[5078a376] LazyArrays v0.14.10
[e9f186c6] Libffi_jll v3.2.1+0
[d4300ac3] Libgcrypt_jll v1.8.5+0
[7add5ba3] Libgpg_error_jll v1.36.0+0
[94ce4f54] Libiconv_jll v1.16.0+0
[6f1fad26] Libtask v0.3.1
[38a345b3] Libuuid_jll v2.34.0+3
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[6fdf6af0] LogDensityProblems v0.9.2
[c7f686f2] MCMCChains v0.4.0
[1914dd2f] MacroTools v0.5.2
[5424a776] Mamba v0.12.2
[dbb5928d] MappedArrays v0.2.2
[442fdcdd] Measures v0.3.0
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[6f286f6a] MultivariateStats v0.7.0
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.2.0
[872c559c] NNlib v0.6.0
[77ba4419] NaNMath v0.3.3
[86f7a689] NamedArrays v0.9.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v0.11.2
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.25.0
[2f80f16e] PCRE_jll v8.42.0+1
[90014a1f] PDMats v0.9.10
[36c8627f] Pango_jll v1.42.4+7
[65888b18] ParameterizedFunctions v4.2.1
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[30392449] Pixman_jll v0.38.4+1
[ccf2f8ad] PlotThemes v1.0.0
[995b91a9] PlotUtils v0.6.1
[91a5bcdd] Plots v0.28.2
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.1.1
[b3c3ace0] RangeArrays v0.3.1
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[f2b01f46] Roots v0.8.3
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.0.0
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[f3b207a7] StatsPlots v0.13.0
[9672c7b4] SteadyStateDiffEq v1.5.0
[09ab397b] StructArrays v0.4.0
[123dc426] SymEngine v0.7.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a759f4b9] TimerOutputs v0.5.3
[9f7883ad] Tracker v0.2.5
[84d833dd] TransformVariables v0.3.8
[a2a6695c] TreeViews v0.3.0
[fce5fe82] Turing v0.7.1
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[19fa3120] VertexSafeGraphs v0.1.0
[ea10d353] WeakRefStrings v0.6.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.4.1
[546b0b6d] X11_jll v1.6.8+4
[02c8fc9c] XML2_jll v2.9.9+0
[aed1982a] XSLT_jll v1.1.33+0
[84d6cd60] Xorg_inputproto_jll v2.3.2+0
[060dd47b] Xorg_kbproto_jll v1.0.7+0
[4f6342f7] Xorg_libX11_jll v1.6.8+0
[0c0b7dd1] Xorg_libXau_jll v1.0.9+0
[a3789734] Xorg_libXdmcp_jll v1.1.3+0
[1082639a] Xorg_libXext_jll v1.3.4+0
[ea2f1a96] Xorg_libXrender_jll v0.9.10+0
[14d82f49] Xorg_libpthread_stubs_jll v0.1.0+0
[c7cfdc94] Xorg_libxcb_jll v1.13.0+0
[21e99dc2] Xorg_renderproto_jll v0.11.1+0
[7c09cfe3] Xorg_util_macros_jll v1.19.2+0
[c2e9c405] Xorg_xcb_proto_jll v1.13.0+0
[d13bc2ba] Xorg_xextproto_jll v7.3.0+0
[46797783] Xorg_xproto_jll v7.0.31+0
[c5fb5394] Xorg_xtrans_jll v1.4.0+0
[83775a58] Zlib_jll v1.2.11+7
[e88e6eb3] Zygote v0.4.1
[700de1a5] ZygoteRules v0.2.0
[b53b4c65] libpng_jll v1.6.37+2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Resolving package versions...
[ Info: Loading DataFrames support into Gadfly.jl
┌ Warning: Error requiring LogDensityProblems from Turing:
│ UndefVarError: AbstractLogDensityProblem not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:144
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::Turing.var"#7#11")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::Turing.var"#7#11", ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #6 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::Turing.var"#6#10", ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::Turing.var"#5#9")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [12] invokelatest at ./essentials.jl:708 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},Requires.var"#3#4"}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:635
│ [16] map at ./array.jl:564 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [19] invokelatest at ./essentials.jl:708 [inlined]
│ [20] _tryrequire_from_serialized(::Base.PkgId, ::UInt64, ::Nothing) at ./loading.jl:710
│ [21] _require_from_serialized(::String) at ./loading.jl:738
│ [22] _require(::Base.PkgId) at ./loading.jl:1034
│ [23] require(::Base.PkgId) at ./loading.jl:922
│ [24] require(::Module, ::Symbol) at ./loading.jl:917
│ [25] include at ./boot.jl:328 [inlined]
│ [26] include_relative(::Module, ::String) at ./loading.jl:1105
│ [27] include(::Module, ::String) at ./Base.jl:31
│ [28] include(::String) at ./client.jl:424
│ [29] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [30] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
│ [31] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [32] top-level scope at util.jl:155
│ [33] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [34] top-level scope at util.jl:155
│ [35] include at ./boot.jl:328 [inlined]
│ [36] include_relative(::Module, ::String) at ./loading.jl:1105
│ [37] include(::Module, ::String) at ./Base.jl:31
│ [38] include(::String) at ./client.jl:424
│ [39] top-level scope at none:6
│ [40] eval(::Module, ::Any) at ./boot.jl:330
│ [41] exec_options(::Base.JLOptions) at ./client.jl:263
│ [42] _start() at ./client.jl:460
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
┌ Warning: Error requiring DynamicHMC from Turing:
│ UndefVarError: NUTS_init_tune_mcmc not defined
│ Stacktrace:
│ [1] top-level scope at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:161
│ [2] eval(::Module, ::Any) at ./boot.jl:330
│ [3] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/dynamicHMC.jl:2
│ [4] eval at ./boot.jl:330 [inlined]
│ [5] eval at /root/.julia/packages/Turing/xFzfF/src/Turing.jl:1 [inlined]
│ [6] (::Turing.var"#15#19")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:67
│ [7] err(::Turing.var"#15#19", ::Module, ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:38
│ [8] #14 at /root/.julia/packages/Requires/9Jse8/src/require.jl:66 [inlined]
│ [9] withpath(::Turing.var"#14#18", ::String) at /root/.julia/packages/Requires/9Jse8/src/require.jl:28
│ [10] (::Turing.var"#13#17")() at /root/.julia/packages/Requires/9Jse8/src/require.jl:65
│ [11] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [12] invokelatest at ./essentials.jl:708 [inlined]
│ [13] #3 at /root/.julia/packages/Requires/9Jse8/src/require.jl:19 [inlined]
│ [14] iterate at ./generator.jl:47 [inlined]
│ [15] _collect(::Array{Function,1}, ::Base.Generator{Array{Function,1},Requires.var"#3#4"}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:635
│ [16] map at ./array.jl:564 [inlined]
│ [17] loadpkg(::Base.PkgId) at /root/.julia/packages/Requires/9Jse8/src/require.jl:19
│ [18] #invokelatest#1 at ./essentials.jl:709 [inlined]
│ [19] invokelatest at ./essentials.jl:708 [inlined]
│ [20] require(::Base.PkgId) at ./loading.jl:925
│ [21] require(::Module, ::Symbol) at ./loading.jl:917
│ [22] include at ./boot.jl:328 [inlined]
│ [23] include_relative(::Module, ::String) at ./loading.jl:1105
│ [24] include(::Module, ::String) at ./Base.jl:31
│ [25] include(::String) at ./client.jl:424
│ [26] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [27] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
│ [28] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [29] top-level scope at util.jl:155
│ [30] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:5
│ [31] top-level scope at util.jl:155
│ [32] include at ./boot.jl:328 [inlined]
│ [33] include_relative(::Module, ::String) at ./loading.jl:1105
│ [34] include(::Module, ::String) at ./Base.jl:31
│ [35] include(::String) at ./client.jl:424
│ [36] top-level scope at none:6
│ [37] eval(::Module, ::Any) at ./boot.jl:330
│ [38] exec_options(::Base.JLOptions) at ./client.jl:263
│ [39] _start() at ./client.jl:460
└ @ Requires ~/.julia/packages/Requires/9Jse8/src/require.jl:40
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.0625
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0056
│ estimated_seconds_left = 0.41
└ ϵ = 0.0625
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0019
│ estimated_seconds_left = 0.046
└ ϵ = 0.0523
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.594257313643447, 0.2434131325445107, 0.2443248567869337]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0066
│ estimated_seconds_left = 0.33
└ ϵ = 0.0534
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.07817349819146047, 0.2238492078630247, 0.20611958783676448]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.014
│ estimated_seconds_left = 1.3
└ ϵ = 0.0421
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.19832531573439321, 0.29058394506768576, 0.23663611950370717]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0011
│ estimated_seconds_left = 0.22
└ ϵ = 0.627
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.085
│ estimated_seconds_left = 8.5
└ ϵ = 0.000672
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.5015584486187264, 2.1870024599649383, 2.1177750273676605]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.00019
│ estimated_seconds_left = 0.074
└ ϵ = 0.00148
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.086
│ estimated_seconds_left = 26.0
└ ϵ = 0.000271
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.13
│ estimated_seconds_left = 25.0
└ ϵ = 0.00031
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.13
│ estimated_seconds_left = 13.0
└ ϵ = 0.000477
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.026631137758898818, 0.2599490966165619, 0.23819098895000948]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.11
│ estimated_seconds_left = 5.2
└ ϵ = 0.000474
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.052
└ estimated_seconds_left = 52.0
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.11
└ estimated_seconds_left = 96.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.099
└ estimated_seconds_left = 79.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.069
└ estimated_seconds_left = 48.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.08
└ estimated_seconds_left = 48.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.094
└ estimated_seconds_left = 47.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.083
└ estimated_seconds_left = 33.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.11
└ estimated_seconds_left = 31.0
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.097
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.099
└ estimated_seconds_left = 9.8
[ Info: finding initial optimum
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:170
┌ Warning: Interrupted. Larger maxiters is needed.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/E16PL/src/integrator_interface.jl:156
┌ Info: found initial stepsize
└ ϵ = 0.000244
┌ Info: Starting MCMC
│ total_steps = 75
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0065
│ estimated_seconds_left = 0.48
└ ϵ = 0.000244
┌ Info: Starting MCMC
│ total_steps = 25
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.0037
│ estimated_seconds_left = 0.09
└ ϵ = 0.000142
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.014152840113673834, 0.014200924975668916, 0.014162296664257957, 0.014174169555231252, 0.05085774265837743, 0.06861771604348915]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.2
│ estimated_seconds_left = 9.8
└ ϵ = 0.000113
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.010056519943992828, 0.010159830502529386, 0.010124644136739518, 0.010128003887114654, 0.20948569688042512, 0.2804251056246331]
┌ Info: Starting MCMC
│ total_steps = 100
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.014
│ estimated_seconds_left = 1.4
└ ϵ = 0.00904
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.007174049743741852, 0.007353616632430656, 0.007276314856014794, 0.007322860785092499, 0.27330500101728666, 0.2877723950904979]
┌ Info: Starting MCMC
│ total_steps = 200
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.045
│ estimated_seconds_left = 8.9
└ ϵ = 0.0126
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.055
│ estimated_seconds_left = 5.5
└ ϵ = 0.0256
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.005195172401400295, 0.005431617060250777, 0.005380672490262237, 0.0054560764020869104, 0.24297158968173316, 0.2904860138136647]
┌ Info: Starting MCMC
│ total_steps = 400
└ tuning = "stepsize and Diagonal metric"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.022
│ estimated_seconds_left = 8.9
└ ϵ = 0.0202
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.046
│ estimated_seconds_left = 14.0
└ ϵ = 0.0168
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.039
│ estimated_seconds_left = 7.7
└ ϵ = 0.0411
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.034
│ estimated_seconds_left = 3.3
└ ϵ = 0.0403
┌ Info: adaptation finished
└ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0037035497639162037, 0.003956525804623411, 0.003881288150678323, 0.003931235861600747, 0.2663117948636502, 0.263517144033961]
┌ Info: Starting MCMC
│ total_steps = 50
└ tuning = "stepsize"
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.012
│ estimated_seconds_left = 0.61
└ ϵ = 0.0274
┌ Info: Starting MCMC
└ total_steps = 1000
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.021
└ estimated_seconds_left = 21.0
┌ Info: MCMC progress
│ step = 101
│ seconds_per_step = 0.036
└ estimated_seconds_left = 32.0
┌ Info: MCMC progress
│ step = 201
│ seconds_per_step = 0.035
└ estimated_seconds_left = 28.0
┌ Info: MCMC progress
│ step = 301
│ seconds_per_step = 0.033
└ estimated_seconds_left = 23.0
┌ Info: MCMC progress
│ step = 401
│ seconds_per_step = 0.032
└ estimated_seconds_left = 19.0
┌ Info: MCMC progress
│ step = 501
│ seconds_per_step = 0.033
└ estimated_seconds_left = 16.0
┌ Info: MCMC progress
│ step = 601
│ seconds_per_step = 0.037
└ estimated_seconds_left = 15.0
┌ Info: MCMC progress
│ step = 701
│ seconds_per_step = 0.04
└ estimated_seconds_left = 12.0
┌ Info: MCMC progress
│ step = 801
│ seconds_per_step = 0.034
└ estimated_seconds_left = 6.8
┌ Info: MCMC progress
│ step = 901
│ seconds_per_step = 0.034
└ estimated_seconds_left = 3.4
Test Summary: | Pass Broken Total
DynamicHMC | 2 2 4
592.769010 seconds (1.12 G allocations: 85.533 GiB, 5.07% gc time)
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ CmdStan ~/.julia/packages/CmdStan/2cHgp/src/CmdStan.jl:27
Starting the test
Test Summary: | Pass Total
Stan_String | 50 50
67.070615 seconds (4.31 M allocations: 219.603 MiB, 0.19% gc time)
One parameter case
File /root/.julia/packages/DiffEqBayes/UDoWn/test/tmp/parameter_estimation_model.stan will be updated.
Stan: Error During Test at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
Got exception outside of a @test
LoadError: IOError: chdir : no such file or directory (ENOENT)
Stacktrace:
[1] uv_error at ./libuv.jl:97 [inlined]
[2] cd(::String) at ./file.jl:84
[3] cd(::CmdStan.var"#6#9"{Bool,Stanmodel}, ::String) at ./file.jl:103
[4] #stan#4(::Type, ::Bool, ::Bool, ::String, ::Bool, ::Bool, ::typeof(stan), ::Stanmodel, ::Array{Dict{String,Any},1}, ::String) at /root/.julia/packages/CmdStan/2cHgp/src/main/stancode.jl:106
[5] #stan at ./none:0 [inlined] (repeats 2 times)
[6] #stan_inference#53(::Symbol, ::Int64, ::Int64, ::Float64, ::Float64, ::Int64, ::Type, ::Tuple{DiffEqBayes.StanODEData,InverseGamma{Float64}}, ::Int64, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},var"##425"{var"#29#33",var"#30#34",var"#31#35",Nothing,Nothing,var"#32#36",Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at /root/.julia/packages/DiffEqBayes/UDoWn/src/stan_inference.jl:140
[7] (::DiffEqBayes.var"#kw##stan_inference")(::NamedTuple{(:num_samples, :num_warmup, :likelihood),Tuple{Int64,Int64,UnionAll}}, ::typeof(stan_inference), ::ODEProblem{Array{Float64,1},Tuple{Float64,Float64},true,Array{Float64,1},var"##425"{var"#29#33",var"#30#34",var"#31#35",Nothing,Nothing,var"#32#36",Expr,Expr},Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},DiffEqBase.StandardODEProblem}, ::Array{Float64,1}, ::Array{Float64,2}, ::Array{Truncated{Normal{Float64},Continuous,Float64},1}) at ./none:0
[8] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
[9] include at ./boot.jl:328 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1105
[11] include(::Module, ::String) at ./Base.jl:31
[12] include(::String) at ./client.jl:424
[13] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[14] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[15] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[16] top-level scope at util.jl:155
[17] top-level scope at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:7
[18] top-level scope at util.jl:155
[19] include at ./boot.jl:328 [inlined]
[20] include_relative(::Module, ::String) at ./loading.jl:1105
[21] include(::Module, ::String) at ./Base.jl:31
[22] include(::String) at ./client.jl:424
[23] top-level scope at none:6
[24] eval(::Module, ::Any) at ./boot.jl:330
[25] exec_options(::Base.JLOptions) at ./client.jl:263
[26] _start() at ./client.jl:460
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/stan.jl:19
Test Summary: | Error Total
Stan | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/DiffEqBayes/UDoWn/test/runtests.jl:4
ERROR: Package DiffEqBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 51 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed IndirectArrays ────────────── v0.5.0
Installed Xorg_xproto_jll ───────────── v7.0.31+0
Installed Xorg_xextproto_jll ────────── v7.3.0+0
Installed Xorg_libXau_jll ───────────── v1.0.9+0
Installed DiffEqBayes ───────────────── v2.2.0
Installed LabelledArrays ────────────── v1.0.0
Installed Optim ─────────────────────── v0.19.5
Installed LightGraphs ───────────────── v1.3.0
Installed NaNMath ───────────────────── v0.3.3
Installed Libgcrypt_jll ─────────────── v1.8.5+0
Installed Adapt ─────────────────────── v1.0.0
Installed Xorg_libXrender_jll ───────── v0.9.10+0
Installed DataStructures ────────────── v0.17.6
Installed Xorg_libX11_jll ───────────── v1.6.8+0
Installed Bijectors ─────────────────── v0.4.0
Installed Compose ───────────────────── v0.7.3
Installed Xorg_xtrans_jll ───────────── v1.4.0+0
Installed Roots ─────────────────────── v0.8.3
Installed ForwardDiff ───────────────── v0.10.7
Installed Showoff ───────────────────── v0.3.1
Installed LineSearches ──────────────── v7.0.1
Installed Calculus ──────────────────── v0.5.1
Installed AxisAlgorithms ────────────── v1.0.0
Installed Fontconfig_jll ────────────── v2.13.1+7
Installed FFTW ──────────────────────── v1.0.1
Installed Rmath ─────────────────────── v0.5.1
Installed BinaryProvider ────────────── v0.5.8
Installed AdvancedHMC ───────────────── v0.2.14
Installed InvertedIndices ───────────── v1.0.0
Installed Pango_jll ─────────────────── v1.42.4+7
Installed Libiconv_jll ──────────────── v1.16.0+0
Installed Reexport ──────────────────── v0.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed Combinatorics ─────────────── v1.0.0
Installed Bzip2_jll ─────────────────── v1.0.6+1
Installed ArnoldiMethod ─────────────── v0.0.4
Installed OrderedCollections ────────── v1.1.0
Installed Xorg_renderproto_jll ──────── v0.11.1+0
Installed Juno ──────────────────────── v0.7.2
Installed TimerOutputs ──────────────── v0.5.3
Installed Pixman_jll ────────────────── v0.38.4+1
Installed Interpolations ────────────── v0.12.5
Installed DistributionsAD ───────────── v0.1.1
Installed Expat_jll ─────────────────── v2.2.7+0
Installed Ratios ────────────────────── v0.3.1
Installed Xorg_libXdmcp_jll ─────────── v1.1.3+0
Installed ArrayLayouts ──────────────── v0.1.5
Installed Hexagons ──────────────────── v0.2.0
Installed LogDensityProblems ────────── v0.9.2
Installed SymEngine ─────────────────── v0.7.0
Installed Polynomials ───────────────── v0.6.0
Installed ZygoteRules ───────────────── v0.2.0
Installed URIParser ─────────────────── v0.4.0
Installed FunctionWrappers ──────────── v1.0.0
Installed Libtask ───────────────────── v0.3.1
Installed CommonSubexpressions ──────── v0.2.0
Installed Missings ──────────────────── v0.4.3
Installed FreeType2_jll ─────────────── v2.10.1+1
Installed Mamba ─────────────────────── v0.12.2
Installed TransformVariables ────────── v0.3.8
Installed Xorg_kbproto_jll ──────────── v1.0.7+0
Installed Media ─────────────────────── v0.5.0
Installed DocStringExtensions ───────── v0.8.1
Installed DiffRules ─────────────────── v0.1.0
Installed NNlib ─────────────────────── v0.6.0
Installed HarfBuzz_jll ──────────────── v2.6.1+4
Installed DynamicHMC ────────────────── v2.1.1
Installed RecursiveArrayTools ───────── v1.2.0
Installed XML2_jll ──────────────────── v2.9.9+0
Installed ArrayInterface ────────────── v2.0.0
Installed RangeArrays ───────────────── v0.3.1
Installed JSON ──────────────────────── v0.21.0
Installed Distributions ─────────────── v0.21.9
Installed Xorg_xcb_proto_jll ────────── v1.13.0+0
Installed MCMCChains ────────────────── v0.4.0
Installed Cairo_jll ─────────────────── v1.16.0+2
Installed SortingAlgorithms ─────────── v0.3.1
Installed StructArrays ──────────────── v0.4.0
Installed FriBidi_jll ───────────────── v1.0.5+2
Installed ColorTypes ────────────────── v0.8.0
Installed FiniteDifferences ─────────── v0.9.0
Installed Gadfly ────────────────────── v1.0.1
Installed Zygote ────────────────────── v0.4.1
Installed Conda ─────────────────────── v1.3.0
Installed Xorg_inputproto_jll ───────── v2.3.2+0
Installed QuadGK ────────────────────── v2.1.1
Installed Xorg_libpthread_stubs_jll ─── v0.1.0+0
Installed ApproxBayes ───────────────── v0.3.1
Installed BenchmarkTools ────────────── v0.4.3
Installed DataFrames ────────────────── v0.19.4
Installed SpecialFunctions ──────────── v0.8.0
Installed BinDeps ───────────────────── v0.8.10
Installed DiffResults ───────────────── v0.0.4
Installed FixedPointNumbers ─────────── v0.6.1
Installed Arpack ────────────────────── v0.3.1
Installed TableTraits ───────────────── v1.0.0
Installed Libgpg_error_jll ──────────── v1.36.0+0
Installed AxisArrays ────────────────── v0.3.3
Installed MacroTools ────────────────── v0.5.2
Installed MuladdMacro ───────────────── v0.2.1
Installed Graphite2_jll ─────────────── v1.3.13+1
Installed StatsFuns ─────────────────── v0.9.0
Installed ProgressMeter ─────────────── v1.2.0
Installed Parameters ────────────────── v0.12.0
Installed Zlib_jll ──────────────────── v1.2.11+7
Installed InplaceOps ────────────────── v0.3.0
Installed LZO_jll ───────────────────── v2.10.0+0
Installed AbstractFFTs ──────────────── v0.4.1
Installed CoupledFields ─────────────── v0.1.0
Installed SimpleTraits ──────────────── v0.9.1
Installed Glib_jll ──────────────────── v2.59.0+1
Installed PositiveFactorizations ────── v0.2.3
Installed RecipesBase ───────────────── v0.7.0
Installed Tracker ───────────────────── v0.2.5
Installed Contour ───────────────────── v0.5.1
Installed DataAPI ───────────────────── v1.1.0
Installed DiffEqBase ────────────────── v6.7.0
Installed Libuuid_jll ───────────────── v2.34.0+3
Installed Parsers ───────────────────── v0.3.10
Installed XSLT_jll ──────────────────── v1.1.33+0
Installed PDMats ────────────────────── v0.9.10
Installed Xorg_libxcb_jll ───────────── v1.13.0+0
Installed IRTools ───────────────────── v0.3.0
Installed Turing ────────────────────── v0.7.1
Installed TreeViews ─────────────────── v0.3.0
Installed Colors ────────────────────── v0.9.6
Installed Graphics ──────────────────── v0.4.0
Installed Xorg_libXext_jll ──────────── v1.3.4+0
Installed Tables ────────────────────── v0.2.11
Installed X11_jll ───────────────────── v1.6.8+4
Installed IterativeSolvers ──────────── v0.8.1
Installed ParameterizedFunctions ────── v4.2.1
Installed LazyArrays ────────────────── v0.14.10
Installed Compat ────────────────────── v2.2.0
Installed ArgCheck ──────────────────── v1.0.1
Installed StaticArrays ──────────────── v0.12.1
Installed Inflate ───────────────────── v0.1.1
Installed MappedArrays ──────────────── v0.2.2
Installed libpng_jll ────────────────── v1.6.37+2
Installed IterTools ─────────────────── v1.3.0
Installed StatsBase ─────────────────── v0.32.0
Installed FillArrays ────────────────── v0.8.2
Installed OffsetArrays ──────────────── v0.11.2
Installed Cairo ─────────────────────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed Measures ──────────────────── v0.3.0
Installed AbstractMCMC ──────────────── v0.1.0
Installed NLSolversBase ─────────────── v7.5.0
Installed IntervalSets ──────────────── v0.3.2
Installed Distances ─────────────────── v0.8.2
Installed Xorg_util_macros_jll ──────── v1.19.2+0
Installed PCRE_jll ──────────────────── v8.42.0+1
Installed KernelDensity ─────────────── v0.5.1
Installed RecursiveFactorization ────── v0.1.0
Installed CategoricalArrays ─────────── v0.7.3
Installed Loess ─────────────────────── v0.5.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed VersionParsing ────────────── v1.1.3
Installed Libffi_jll ────────────────── v3.2.1+0
Installed Gettext_jll ───────────────── v0.20.1+0
┌ Error: Tree Hash Mismatch!
│ Expected git-tree-sha1: e80d1b7446d31c7738ed51fda764944d4bf1fcbe
│ Calculated git-tree-sha1: b37f6296f6e49bb2d602909f058cefbac9cdaa6e
└ @ Pkg.Artifacts /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Artifacts.jl:775
ERROR: Unable to automatically install 'FreeType2' from '/root/.julia/packages/FreeType2_jll/BxhKx/Artifacts.toml'
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] #ensure_artifact_installed#42(::Pkg.BinaryPlatforms.Linux, ::Bool, ::typeof(Pkg.Artifacts.ensure_artifact_installed), ::String, ::Dict{String,Any}, ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Artifacts.jl:867
[3] (::Pkg.Artifacts.var"#kw##ensure_artifact_installed")(::NamedTuple{(:platform, :verbose),Tuple{Pkg.BinaryPlatforms.Linux,Bool}}, ::typeof(Pkg.Artifacts.ensure_artifact_installed), ::String, ::Dict{String,Any}, ::String) at ./none:0
[4] #ensure_all_artifacts_installed#43(::Pkg.BinaryPlatforms.Linux, ::Nothing, ::Bool, ::Bool, ::typeof(Pkg.Artifacts.ensure_all_artifacts_installed), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Artifacts.jl:912
[5] #ensure_all_artifacts_installed at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:0 [inlined]
[6] #download_artifacts#78(::Pkg.BinaryPlatforms.Linux, ::Bool, ::typeof(Pkg.Operations.download_artifacts), ::Array{String,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:580
[7] #download_artifacts at ./none:0 [inlined]
[8] #download_artifacts#73(::Pkg.BinaryPlatforms.Linux, ::Bool, ::typeof(Pkg.Operations.download_artifacts), ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:570
[9] (::Pkg.Operations.var"#kw##download_artifacts")(::NamedTuple{(:platform,),Tuple{Pkg.BinaryPlatforms.Linux}}, ::typeof(Pkg.Operations.download_artifacts), ::Array{Pkg.Types.PackageSpec,1}) at ./none:0
[10] #add#112(::Bool, ::Pkg.BinaryPlatforms.Linux, ::typeof(Pkg.Operations.add), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1017
[11] #add at ./none:0 [inlined]
[12] #add#25(::Bool, ::Pkg.BinaryPlatforms.Linux, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.add), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:102
[13] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:72
[14] #add#24 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:69 [inlined]
[15] add at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:69 [inlined]
[16] #add#21 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:67 [inlined]
[17] add at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:67 [inlined]
[18] #add#20(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.add), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:66
[19] add(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:66
[20] top-level scope at none:9