DeIdentification

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Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 5 minutes, 7 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed DataAPI ───────────────────── v1.1.0
 Installed Missings ──────────────────── v0.4.3
 Installed YAML ──────────────────────── v0.3.2
 Installed TableTraits ───────────────── v1.0.0
 Installed DeIdentification ──────────── v0.8.0
 Installed Memento ───────────────────── v0.12.1
 Installed DataFrames ────────────────── v0.19.4
 Installed BinaryProvider ────────────── v0.5.8
 Installed Reexport ──────────────────── v0.2.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed CSV ───────────────────────── v0.5.18
 Installed InvertedIndices ───────────── v1.0.0
 Installed ArrayLayouts ──────────────── v0.1.5
 Installed Compat ────────────────────── v2.2.0
 Installed Codecs ────────────────────── v0.5.0
 Installed DataValueInterfaces ───────── v1.0.0
 Installed FilePathsBase ─────────────── v0.7.0
 Installed Tables ────────────────────── v0.2.11
 Installed OrderedCollections ────────── v1.1.0
 Installed WeakRefStrings ────────────── v0.6.1
 Installed FillArrays ────────────────── v0.8.2
 Installed Parsers ───────────────────── v0.3.10
 Installed DataStructures ────────────── v0.17.6
 Installed Mocking ───────────────────── v0.7.0
 Installed JSON ──────────────────────── v0.21.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed StaticArrays ──────────────── v0.12.1
 Installed TimeZones ─────────────────── v0.10.3
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed EzXML ─────────────────────── v0.9.5
 Installed LazyArrays ────────────────── v0.14.10
 Installed CategoricalArrays ─────────── v0.7.3
 Installed Glob ──────────────────────── v1.2.0
 Installed MacroTools ────────────────── v0.5.2
 Installed Syslogs ───────────────────── v0.3.0
  Updating `~/.julia/environments/v1.2/Project.toml`
  [b905b068] + DeIdentification v0.8.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [4c555306] + ArrayLayouts v0.1.5
  [b99e7846] + BinaryProvider v0.5.8
  [336ed68f] + CSV v0.5.18
  [324d7699] + CategoricalArrays v0.7.3
  [19ecbf4d] + Codecs v0.5.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b905b068] + DeIdentification v0.8.0
  [8f5d6c58] + EzXML v0.9.5
  [48062228] + FilePathsBase v0.7.0
  [1a297f60] + FillArrays v0.8.2
  [c27321d9] + Glob v1.2.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [5078a376] + LazyArrays v0.14.10
  [1914dd2f] + MacroTools v0.5.2
  [f28f55f0] + Memento v0.12.1
  [e1d29d7a] + Missings v0.4.3
  [78c3b35d] + Mocking v0.7.0
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.2
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [cea106d9] + Syslogs v0.3.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [f269a46b] + TimeZones v0.10.3
  [ea10d353] + WeakRefStrings v0.6.1
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
  Building TimeZones → `~/.julia/packages/TimeZones/pjvlM/deps/build.log`
   Testing DeIdentification
 Resolving package versions...
    Status `/tmp/jl_nLhye1/Manifest.toml`
  [4c555306] ArrayLayouts v0.1.5
  [b99e7846] BinaryProvider v0.5.8
  [336ed68f] CSV v0.5.18
  [324d7699] CategoricalArrays v0.7.3
  [19ecbf4d] Codecs v0.5.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b905b068] DeIdentification v0.8.0
  [8f5d6c58] EzXML v0.9.5
  [48062228] FilePathsBase v0.7.0
  [1a297f60] FillArrays v0.8.2
  [c27321d9] Glob v1.2.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [5078a376] LazyArrays v0.14.10
  [1914dd2f] MacroTools v0.5.2
  [f28f55f0] Memento v0.12.1
  [e1d29d7a] Missings v0.4.3
  [78c3b35d] Mocking v0.7.0
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.10
  [2dfb63ee] PooledArrays v0.5.2
  [189a3867] Reexport v0.2.0
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.1
  [cea106d9] Syslogs v0.3.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [f269a46b] TimeZones v0.10.3
  [ea10d353] WeakRefStrings v0.6.1
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary:   | Pass  Total
config creation |    3      3
Test Summary:          | Pass  Total
create config from csv |    2      2
Test Summary:  | Pass  Total
rid generation |    2      2
[info | deidentify]: 2019-12-03T00:25:38.158 Logging session for project ehr
[info | deidentify]: 2019-12-03T00:25:38.979 Setting seed for project ehr
[info | deidentify]: 2019-12-03T00:25:38.98 ====================== Processing dx ======================
[info | deidentify]: 2019-12-03T00:25:38.98 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-03T00:25:53.961 Renaming file columns
[info | deidentify]: 2019-12-03T00:25:54.002 Checking for primary column
[info | deidentify]: 2019-12-03T00:25:55.138 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-03T00:25:55.138 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-03T00:26:04.963 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:04.963 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:04.971 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-03T00:26:04.972 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-03T00:26:05.62 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:05.622 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-03T00:26:08.337 ====================== Processing pat ======================
[info | deidentify]: 2019-12-03T00:26:08.337 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-03T00:26:08.359 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:08.359 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:08.59 ====================== Processing med ======================
[info | deidentify]: 2019-12-03T00:26:08.59 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-03T00:26:09.062 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:09.063 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:09.068 Writing ID dictionaries to ./output/id_dicts_20191203002609.json
[info | deidentify]: 2019-12-03T00:26:09.372 Writing dateshift values to ./output/dateshifts_20191203002609.json
[info | deidentify]: 2019-12-03T00:26:09.628 Writing salt values to ./output/salts_20191203002609.json
Test Summary:     | Pass  Total
integration tests |   15     15
[info | deidentify]: 2019-12-03T00:26:26.613 Logging session for project ehr
[info | deidentify]: 2019-12-03T00:26:26.613 Setting seed for project ehr
[info | deidentify]: 2019-12-03T00:26:26.613 ====================== Processing dx ======================
[info | deidentify]: 2019-12-03T00:26:26.613 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-03T00:26:26.616 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:26.616 Checking for primary column
Test Summary:       | Pass  Total
primary identifiter |    1      1
[info | deidentify]: 2019-12-03T00:26:26.888 Logging session for project ehr
[info | deidentify]: 2019-12-03T00:26:26.888 Setting seed for project ehr
[info | deidentify]: 2019-12-03T00:26:26.889 ====================== Processing dx ======================
[info | deidentify]: 2019-12-03T00:26:26.889 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-03T00:26:26.891 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:26.892 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:26.901 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-03T00:26:26.901 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-03T00:26:26.904 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:26.904 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:26.913 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-03T00:26:26.914 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-03T00:26:26.916 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:26.916 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-03T00:26:26.931 ====================== Processing pat ======================
[info | deidentify]: 2019-12-03T00:26:26.931 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-03T00:26:26.933 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:26.933 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.045 ====================== Processing med ======================
[info | deidentify]: 2019-12-03T00:26:27.045 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-03T00:26:27.046 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.047 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.05 Writing ID dictionaries to ./output/id_dicts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.051 Writing dateshift values to ./output/dateshifts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.051 Writing salt values to ./output/salts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.051 Logging session for project ehr
[info | deidentify]: 2019-12-03T00:26:27.051 Setting seed for project ehr
[info | deidentify]: 2019-12-03T00:26:27.052 ====================== Processing dx ======================
[info | deidentify]: 2019-12-03T00:26:27.052 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-03T00:26:27.054 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.054 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.064 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-03T00:26:27.064 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-03T00:26:27.067 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.067 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-03T00:26:27.076 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-03T00:26:27.077 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-03T00:26:27.079 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.079 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-03T00:26:27.091 ====================== Processing pat ======================
[info | deidentify]: 2019-12-03T00:26:27.091 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-03T00:26:27.093 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.093 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.191 ====================== Processing med ======================
[info | deidentify]: 2019-12-03T00:26:27.191 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-03T00:26:27.193 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.193 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.197 Writing ID dictionaries to ./output/id_dicts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.198 Writing dateshift values to ./output/dateshifts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.198 Writing salt values to ./output/salts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.199 Logging session for project ehr
[info | deidentify]: 2019-12-03T00:26:27.199 Setting seed for project ehr
[info | deidentify]: 2019-12-03T00:26:27.199 ====================== Processing dx ======================
[info | deidentify]: 2019-12-03T00:26:27.2 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-03T00:26:27.202 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.202 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.212 ====================== Processing pat ======================
[info | deidentify]: 2019-12-03T00:26:27.212 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-03T00:26:27.214 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.215 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.303 ====================== Processing med ======================
[info | deidentify]: 2019-12-03T00:26:27.303 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-03T00:26:27.305 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.305 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.309 Writing ID dictionaries to ./output/id_dicts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.31 Writing dateshift values to ./output/dateshifts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.31 Writing salt values to ./output/salts_20191203002627.json
Test Summary: | Pass  Total
hash seeding  |    2      2
[info | deidentify]: 2019-12-03T00:26:27.395 Logging session for project ehr
[info | deidentify]: 2019-12-03T00:26:27.395 Setting seed for project ehr
[info | deidentify]: 2019-12-03T00:26:27.395 ====================== Processing dx ======================
[info | deidentify]: 2019-12-03T00:26:27.395 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-03T00:26:27.398 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.398 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.408 ====================== Processing pat ======================
[info | deidentify]: 2019-12-03T00:26:27.408 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-03T00:26:27.41 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.411 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.525 ====================== Processing med ======================
[info | deidentify]: 2019-12-03T00:26:27.525 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-03T00:26:27.527 Renaming file columns
[info | deidentify]: 2019-12-03T00:26:27.527 Checking for primary column
[info | deidentify]: 2019-12-03T00:26:27.531 Writing ID dictionaries to ./path/to/new/output/id_dicts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.532 Writing dateshift values to ./path/to/new/output/dateshifts_20191203002627.json
[info | deidentify]: 2019-12-03T00:26:27.533 Writing salt values to ./path/to/new/output/salts_20191203002627.json
Test Summary:             | Pass  Total
create output directories |    2      2
   Testing DeIdentification tests passed 

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 5 minutes, 25 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed YAML ──────────────────────── v0.3.2
 Installed DeIdentification ──────────── v0.8.0
 Installed DataStructures ────────────── v0.17.6
 Installed StaticArrays ──────────────── v0.12.1
 Installed LazyArrays ────────────────── v0.14.10
 Installed CategoricalArrays ─────────── v0.7.3
 Installed CSV ───────────────────────── v0.5.18
 Installed Compat ────────────────────── v2.2.0
 Installed Parsers ───────────────────── v0.3.10
 Installed InvertedIndices ───────────── v1.0.0
 Installed Missings ──────────────────── v0.4.3
 Installed MacroTools ────────────────── v0.5.2
 Installed BinaryProvider ────────────── v0.5.8
 Installed Syslogs ───────────────────── v0.3.0
 Installed TableTraits ───────────────── v1.0.0
 Installed OrderedCollections ────────── v1.1.0
 Installed JSON ──────────────────────── v0.21.0
 Installed ArrayLayouts ──────────────── v0.1.5
 Installed DataAPI ───────────────────── v1.1.0
 Installed EzXML ─────────────────────── v0.9.5
 Installed Codecs ────────────────────── v0.5.0
 Installed Mocking ───────────────────── v0.7.0
 Installed Tables ────────────────────── v0.2.11
 Installed Memento ───────────────────── v0.12.1
 Installed DataValueInterfaces ───────── v1.0.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed Glob ──────────────────────── v1.2.0
 Installed FilePathsBase ─────────────── v0.7.0
 Installed WeakRefStrings ────────────── v0.6.1
 Installed TimeZones ─────────────────── v0.10.3
 Installed FillArrays ────────────────── v0.8.2
 Installed Reexport ──────────────────── v0.2.0
 Installed DataFrames ────────────────── v0.19.4
  Updating `~/.julia/environments/v1.3/Project.toml`
  [b905b068] + DeIdentification v0.8.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [4c555306] + ArrayLayouts v0.1.5
  [b99e7846] + BinaryProvider v0.5.8
  [336ed68f] + CSV v0.5.18
  [324d7699] + CategoricalArrays v0.7.3
  [19ecbf4d] + Codecs v0.5.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b905b068] + DeIdentification v0.8.0
  [8f5d6c58] + EzXML v0.9.5
  [48062228] + FilePathsBase v0.7.0
  [1a297f60] + FillArrays v0.8.2
  [c27321d9] + Glob v1.2.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [5078a376] + LazyArrays v0.14.10
  [1914dd2f] + MacroTools v0.5.2
  [f28f55f0] + Memento v0.12.1
  [e1d29d7a] + Missings v0.4.3
  [78c3b35d] + Mocking v0.7.0
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.2
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [cea106d9] + Syslogs v0.3.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [f269a46b] + TimeZones v0.10.3
  [ea10d353] + WeakRefStrings v0.6.1
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
  Building TimeZones → `~/.julia/packages/TimeZones/pjvlM/deps/build.log`
   Testing DeIdentification
 Resolving package versions...
    Status `/tmp/jl_TZDqmE/Manifest.toml`
  [4c555306] ArrayLayouts v0.1.5
  [b99e7846] BinaryProvider v0.5.8
  [336ed68f] CSV v0.5.18
  [324d7699] CategoricalArrays v0.7.3
  [19ecbf4d] Codecs v0.5.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b905b068] DeIdentification v0.8.0
  [8f5d6c58] EzXML v0.9.5
  [48062228] FilePathsBase v0.7.0
  [1a297f60] FillArrays v0.8.2
  [c27321d9] Glob v1.2.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [5078a376] LazyArrays v0.14.10
  [1914dd2f] MacroTools v0.5.2
  [f28f55f0] Memento v0.12.1
  [e1d29d7a] Missings v0.4.3
  [78c3b35d] Mocking v0.7.0
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.10
  [2dfb63ee] PooledArrays v0.5.2
  [189a3867] Reexport v0.2.0
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.1
  [cea106d9] Syslogs v0.3.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [f269a46b] TimeZones v0.10.3
  [ea10d353] WeakRefStrings v0.6.1
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary:   | Pass  Total
config creation |    3      3
Test Summary:          | Pass  Total
create config from csv |    2      2
Test Summary:  | Pass  Total
rid generation |    2      2
[info | deidentify]: 2019-12-02T23:30:46.102 Logging session for project ehr
[info | deidentify]: 2019-12-02T23:30:46.6 Setting seed for project ehr
[info | deidentify]: 2019-12-02T23:30:46.601 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T23:30:46.601 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T23:30:58.611 Renaming file columns
[info | deidentify]: 2019-12-02T23:30:58.684 Checking for primary column
[info | deidentify]: 2019-12-02T23:30:59.631 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-02T23:30:59.631 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-02T23:31:07.448 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:07.449 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:07.456 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-02T23:31:07.456 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-02T23:31:07.966 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:07.967 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T23:31:09.749 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T23:31:09.749 Reading data from ./data/pat.csv
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T23:31:09.765 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:09.765 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:09.96 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T23:31:09.961 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T23:31:10.29 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:10.29 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:10.294 Writing ID dictionaries to ./output/id_dicts_20191202233110.json
[info | deidentify]: 2019-12-02T23:31:10.549 Writing dateshift values to ./output/dateshifts_20191202233110.json
[info | deidentify]: 2019-12-02T23:31:10.695 Writing salt values to ./output/salts_20191202233110.json
Test Summary:     | Pass  Total
integration tests |   15     15
[info | deidentify]: 2019-12-02T23:31:24.077 Logging session for project ehr
[info | deidentify]: 2019-12-02T23:31:24.077 Setting seed for project ehr
[info | deidentify]: 2019-12-02T23:31:24.077 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T23:31:24.077 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T23:31:24.079 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.079 Checking for primary column
Test Summary:       | Pass  Total
primary identifiter |    1      1
[info | deidentify]: 2019-12-02T23:31:24.385 Logging session for project ehr
[info | deidentify]: 2019-12-02T23:31:24.386 Setting seed for project ehr
[info | deidentify]: 2019-12-02T23:31:24.386 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T23:31:24.386 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T23:31:24.389 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.389 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.398 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-02T23:31:24.398 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-02T23:31:24.401 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.402 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.411 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-02T23:31:24.411 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-02T23:31:24.413 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.414 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T23:31:24.427 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T23:31:24.428 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T23:31:24.43 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.431 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.519 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T23:31:24.519 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T23:31:24.521 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.521 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.525 Writing ID dictionaries to ./output/id_dicts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.525 Writing dateshift values to ./output/dateshifts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.526 Writing salt values to ./output/salts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.526 Logging session for project ehr
[info | deidentify]: 2019-12-02T23:31:24.527 Setting seed for project ehr
[info | deidentify]: 2019-12-02T23:31:24.527 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T23:31:24.527 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T23:31:24.529 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.529 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.539 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-02T23:31:24.539 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-02T23:31:24.541 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.542 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.551 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-02T23:31:24.551 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-02T23:31:24.554 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.554 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T23:31:24.567 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T23:31:24.568 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T23:31:24.57 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.571 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.658 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T23:31:24.659 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T23:31:24.66 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.66 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.664 Writing ID dictionaries to ./output/id_dicts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.665 Writing dateshift values to ./output/dateshifts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.665 Writing salt values to ./output/salts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.666 Logging session for project ehr
[info | deidentify]: 2019-12-02T23:31:24.666 Setting seed for project ehr
[info | deidentify]: 2019-12-02T23:31:24.666 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T23:31:24.666 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T23:31:24.668 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.668 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.677 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T23:31:24.677 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T23:31:24.679 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.679 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.758 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T23:31:24.758 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T23:31:24.759 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.76 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.763 Writing ID dictionaries to ./output/id_dicts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.764 Writing dateshift values to ./output/dateshifts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.765 Writing salt values to ./output/salts_20191202233124.json
Test Summary: | Pass  Total
hash seeding  |    2      2
[info | deidentify]: 2019-12-02T23:31:24.854 Logging session for project ehr
[info | deidentify]: 2019-12-02T23:31:24.854 Setting seed for project ehr
[info | deidentify]: 2019-12-02T23:31:24.854 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T23:31:24.855 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T23:31:24.857 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.857 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.866 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T23:31:24.867 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T23:31:24.869 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.869 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.958 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T23:31:24.958 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T23:31:24.959 Renaming file columns
[info | deidentify]: 2019-12-02T23:31:24.96 Checking for primary column
[info | deidentify]: 2019-12-02T23:31:24.963 Writing ID dictionaries to ./path/to/new/output/id_dicts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.964 Writing dateshift values to ./path/to/new/output/dateshifts_20191202233124.json
[info | deidentify]: 2019-12-02T23:31:24.964 Writing salt values to ./path/to/new/output/salts_20191202233124.json
Test Summary:             | Pass  Total
create output directories |    2      2
   Testing DeIdentification tests passed 

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 7 minutes, 12 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed WeakRefStrings ────────────── v0.6.1
 Installed ArrayLayouts ──────────────── v0.1.5
 Installed Tables ────────────────────── v0.2.11
 Installed DeIdentification ──────────── v0.8.0
 Installed DataStructures ────────────── v0.17.6
 Installed LazyArrays ────────────────── v0.14.10
 Installed Memento ───────────────────── v0.12.1
 Installed TimeZones ─────────────────── v0.10.3
 Installed Compat ────────────────────── v2.2.0
 Installed StaticArrays ──────────────── v0.12.1
 Installed DataFrames ────────────────── v0.19.4
 Installed MacroTools ────────────────── v0.5.2
 Installed FillArrays ────────────────── v0.8.2
 Installed Mocking ───────────────────── v0.7.0
 Installed TableTraits ───────────────── v1.0.0
 Installed YAML ──────────────────────── v0.3.2
 Installed Missings ──────────────────── v0.4.3
 Installed BinaryProvider ────────────── v0.5.8
 Installed Glob ──────────────────────── v1.2.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed FilePathsBase ─────────────── v0.7.0
 Installed InvertedIndices ───────────── v1.0.0
 Installed EzXML ─────────────────────── v0.9.5
 Installed Codecs ────────────────────── v0.5.0
 Installed Reexport ──────────────────── v0.2.0
 Installed DataValueInterfaces ───────── v1.0.0
 Installed Syslogs ───────────────────── v0.3.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed DataAPI ───────────────────── v1.1.0
 Installed CategoricalArrays ─────────── v0.7.3
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed Parsers ───────────────────── v0.3.10
 Installed JSON ──────────────────────── v0.21.0
 Installed OrderedCollections ────────── v1.1.0
 Installed CSV ───────────────────────── v0.5.18
  Updating `~/.julia/environments/v1.3/Project.toml`
  [b905b068] + DeIdentification v0.8.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [4c555306] + ArrayLayouts v0.1.5
  [b99e7846] + BinaryProvider v0.5.8
  [336ed68f] + CSV v0.5.18
  [324d7699] + CategoricalArrays v0.7.3
  [19ecbf4d] + Codecs v0.5.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b905b068] + DeIdentification v0.8.0
  [8f5d6c58] + EzXML v0.9.5
  [48062228] + FilePathsBase v0.7.0
  [1a297f60] + FillArrays v0.8.2
  [c27321d9] + Glob v1.2.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [5078a376] + LazyArrays v0.14.10
  [1914dd2f] + MacroTools v0.5.2
  [f28f55f0] + Memento v0.12.1
  [e1d29d7a] + Missings v0.4.3
  [78c3b35d] + Mocking v0.7.0
  [bac558e1] + OrderedCollections v1.1.0
  [69de0a69] + Parsers v0.3.10
  [2dfb63ee] + PooledArrays v0.5.2
  [189a3867] + Reexport v0.2.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [cea106d9] + Syslogs v0.3.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [f269a46b] + TimeZones v0.10.3
  [ea10d353] + WeakRefStrings v0.6.1
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
  Building TimeZones → `~/.julia/packages/TimeZones/pjvlM/deps/build.log`
   Testing DeIdentification
 Resolving package versions...
    Status `/tmp/jl_VUf4ir/Manifest.toml`
  [4c555306] ArrayLayouts v0.1.5
  [b99e7846] BinaryProvider v0.5.8
  [336ed68f] CSV v0.5.18
  [324d7699] CategoricalArrays v0.7.3
  [19ecbf4d] Codecs v0.5.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [b905b068] DeIdentification v0.8.0
  [8f5d6c58] EzXML v0.9.5
  [48062228] FilePathsBase v0.7.0
  [1a297f60] FillArrays v0.8.2
  [c27321d9] Glob v1.2.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [5078a376] LazyArrays v0.14.10
  [1914dd2f] MacroTools v0.5.2
  [f28f55f0] Memento v0.12.1
  [e1d29d7a] Missings v0.4.3
  [78c3b35d] Mocking v0.7.0
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.10
  [2dfb63ee] PooledArrays v0.5.2
  [189a3867] Reexport v0.2.0
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.1
  [cea106d9] Syslogs v0.3.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [f269a46b] TimeZones v0.10.3
  [ea10d353] WeakRefStrings v0.6.1
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary:   | Pass  Total
config creation |    3      3
Test Summary:          | Pass  Total
create config from csv |    2      2
Test Summary:  | Pass  Total
rid generation |    2      2
[info | deidentify]: 2019-12-02T16:30:29.05 Logging session for project ehr
[info | deidentify]: 2019-12-02T16:30:29.773 Setting seed for project ehr
[info | deidentify]: 2019-12-02T16:30:29.773 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T16:30:29.773 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T16:30:44.385 Renaming file columns
[info | deidentify]: 2019-12-02T16:30:44.48 Checking for primary column
[info | deidentify]: 2019-12-02T16:30:46.292 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-02T16:30:46.292 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-02T16:30:56.157 Renaming file columns
[info | deidentify]: 2019-12-02T16:30:56.158 Checking for primary column
[info | deidentify]: 2019-12-02T16:30:56.174 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-02T16:30:56.174 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-02T16:30:56.888 Renaming file columns
[info | deidentify]: 2019-12-02T16:30:56.888 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T16:30:59.122 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T16:30:59.122 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T16:30:59.151 Renaming file columns
[info | deidentify]: 2019-12-02T16:30:59.151 Checking for primary column
[info | deidentify]: 2019-12-02T16:30:59.568 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T16:30:59.568 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T16:31:00.08 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:00.08 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:00.083 Writing ID dictionaries to ./output/id_dicts_20191202163100.json
[info | deidentify]: 2019-12-02T16:31:00.557 Writing dateshift values to ./output/dateshifts_20191202163100.json
[info | deidentify]: 2019-12-02T16:31:00.872 Writing salt values to ./output/salts_20191202163100.json
Test Summary:     | Pass  Total
integration tests |   15     15
[info | deidentify]: 2019-12-02T16:31:18.838 Logging session for project ehr
[info | deidentify]: 2019-12-02T16:31:18.839 Setting seed for project ehr
[info | deidentify]: 2019-12-02T16:31:18.839 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T16:31:18.839 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T16:31:18.842 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:18.843 Checking for primary column
Test Summary:       | Pass  Total
primary identifiter |    1      1
[info | deidentify]: 2019-12-02T16:31:19.165 Logging session for project ehr
[info | deidentify]: 2019-12-02T16:31:19.165 Setting seed for project ehr
[info | deidentify]: 2019-12-02T16:31:19.166 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T16:31:19.166 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T16:31:19.168 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.168 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.177 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-02T16:31:19.177 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-02T16:31:19.18 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.18 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.188 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-02T16:31:19.189 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-02T16:31:19.191 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.191 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T16:31:19.268 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T16:31:19.268 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T16:31:19.286 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.286 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.427 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T16:31:19.427 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T16:31:19.428 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.428 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.432 Writing ID dictionaries to ./output/id_dicts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.436 Writing dateshift values to ./output/dateshifts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.437 Writing salt values to ./output/salts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.437 Logging session for project ehr
[info | deidentify]: 2019-12-02T16:31:19.437 Setting seed for project ehr
[info | deidentify]: 2019-12-02T16:31:19.437 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T16:31:19.437 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T16:31:19.44 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.44 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.453 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-02T16:31:19.453 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-02T16:31:19.456 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.456 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T16:31:19.48 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-02T16:31:19.481 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-02T16:31:19.483 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.483 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-02T16:31:19.507 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T16:31:19.507 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T16:31:19.51 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.51 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.63 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T16:31:19.631 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T16:31:19.632 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.632 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.636 Writing ID dictionaries to ./output/id_dicts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.637 Writing dateshift values to ./output/dateshifts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.637 Writing salt values to ./output/salts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.637 Logging session for project ehr
[info | deidentify]: 2019-12-02T16:31:19.638 Setting seed for project ehr
[info | deidentify]: 2019-12-02T16:31:19.638 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T16:31:19.638 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T16:31:19.64 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.641 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.65 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T16:31:19.65 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T16:31:19.652 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.652 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.792 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T16:31:19.793 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T16:31:19.794 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.794 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.812 Writing ID dictionaries to ./output/id_dicts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.813 Writing dateshift values to ./output/dateshifts_20191202163119.json
[info | deidentify]: 2019-12-02T16:31:19.814 Writing salt values to ./output/salts_20191202163119.json
Test Summary: | Pass  Total
hash seeding  |    2      2
[info | deidentify]: 2019-12-02T16:31:19.905 Logging session for project ehr
[info | deidentify]: 2019-12-02T16:31:19.905 Setting seed for project ehr
[info | deidentify]: 2019-12-02T16:31:19.906 ====================== Processing dx ======================
[info | deidentify]: 2019-12-02T16:31:19.906 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-02T16:31:19.908 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.908 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:19.918 ====================== Processing pat ======================
[info | deidentify]: 2019-12-02T16:31:19.918 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-02T16:31:19.92 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:19.92 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:20.009 ====================== Processing med ======================
[info | deidentify]: 2019-12-02T16:31:20.009 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-02T16:31:20.011 Renaming file columns
[info | deidentify]: 2019-12-02T16:31:20.011 Checking for primary column
[info | deidentify]: 2019-12-02T16:31:20.014 Writing ID dictionaries to ./path/to/new/output/id_dicts_20191202163120.json
[info | deidentify]: 2019-12-02T16:31:20.015 Writing dateshift values to ./path/to/new/output/dateshifts_20191202163120.json
[info | deidentify]: 2019-12-02T16:31:20.016 Writing salt values to ./path/to/new/output/salts_20191202163120.json
Test Summary:             | Pass  Total
create output directories |    2      2
   Testing DeIdentification tests passed