Clustering

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If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.

Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 5 minutes, 10 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed Missings ─────────── v0.4.3
 Installed DataAPI ──────────── v1.1.0
 Installed SortingAlgorithms ── v0.3.1
 Installed OrderedCollections ─ v1.1.0
 Installed NearestNeighbors ─── v0.4.4
 Installed DataStructures ───── v0.17.6
 Installed Clustering ───────── v0.13.3
 Installed StatsBase ────────── v0.32.0
 Installed Distances ────────── v0.8.2
 Installed StaticArrays ─────── v0.12.1
  Updating `~/.julia/environments/v1.2/Project.toml`
  [aaaa29a8] + Clustering v0.13.3
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [aaaa29a8] + Clustering v0.13.3
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [b4f34e82] + Distances v0.8.2
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [2a0f44e3] + Base64 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [de0858da] + Printf 
  [9a3f8284] + Random 
  [9e88b42a] + Serialization 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [4ec0a83e] + Unicode 
   Testing Clustering
 Resolving package versions...
 Installed CodecZlib ────────── v0.6.0
 Installed TranscodingStreams ─ v0.9.5
 Installed BinaryProvider ───── v0.5.8
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
    Status `/tmp/jl_xASXr2/Manifest.toml`
  [b99e7846] BinaryProvider v0.5.8
  [aaaa29a8] Clustering v0.13.3
  [944b1d66] CodecZlib v0.6.0
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.6
  [b4f34e82] Distances v0.8.2
  [e1d29d7a] Missings v0.4.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Runing tests:
* seeding.jl ...
Test Summary: | Pass  Total
seeding       |   64     64
* kmeans.jl ...
  Iters               objv        objv-change | affected 
-------------------------------------------------------------
      0       1.470563e+00
      1       7.352817e-01      -7.352817e-01 |        0
      2       7.352817e-01       0.000000e+00 |        0
K-means converged with 2 iterations (objv = 0.7352816593329847)
K-means converged with 2 iterations (objv = 0.09164881001248792)
┌ Warning: The clustering cost increased at iteration #1
└ @ Clustering ~/.julia/packages/Clustering/Dlx92/src/kmeans.jl:179
Test Summary:      | Pass  Total
kmeans() (k-means) |   87     87
* kmedoids.jl ...
  Iters               objv        objv-change
-----------------------------------------------------
      0       1.589132e+00
      1       1.623600e+00       3.446832e-02
      2       1.623600e+00       0.000000e+00
K-medoids converged with 2 iterations (objv = 1.6236002870003423)
K-medoids converged with 2 iterations (objv = 1.6236002870003423)
Test Summary:          | Pass  Total
kmedoids() (k-medoids) |   26     26
* affprop.jl ...
  Iters  objv-change | exemplars 
-----------------------------------------------------
      1   1.7243e+00 |        1
      2   1.1599e+00 |        1
      3   1.0111e+00 |        1
      4   8.2884e-01 |        1
      5   6.2996e-01 |        1
      6   4.4970e-01 |        1
      7   3.0568e-01 |        1
      8   1.9999e-01 |        1
      9   1.2694e-01 |        1
     10   7.8624e-02 |        1
Affinity propagation converged with 10 iterations: 1 exemplars.
Affinity propagation converged with 9 iterations: 1 exemplars.
Test Summary:                         | Pass  Total
affinityprop() (affinity propagation) |   78     78
* dbscan.jl ...
Test Summary:                | Pass  Total
dbscan() (DBSCAN clustering) |   19     19
* fuzzycmeans.jl ...
  Iters      center-change
----------------------------
      1       5.244585e-01
      2       1.013155e-01
      3       2.621402e-01
      4       2.313798e-01
      5       3.691017e-02
Fuzzy C-means converged with 5 iterations (δ = 0.036910170483319474)
Fuzzy C-means converged with 6 iterations (δ = 0.052544440650040276)
Test Summary:  | Pass  Total
fuzzy_cmeans() |   36     36
* counts.jl ...
Test Summary:                 | Pass  Total
counts() (contingency matrix) |   22     22
* silhouette.jl ...
Test Summary: | Pass  Broken  Total
silhouettes() |   11       1     12
* varinfo.jl ...
Test Summary:                       | Pass  Total
varinfo() (variational information) |    7      7
* randindex.jl ...
Test Summary:            | Pass  Total
randindex() (Rand index) |   13     13
* hclust.jl ...
Test Summary:                      | Pass  Total
hclust() (hierarchical clustering) | 6665   6665
* mcl.jl ...
[ Info: Starting MCL iterations...
┌ Info: MCL iter. #0: rel.Δ=
└   rel_delta = 0.0
[ Info: MCL converged after 0 iteration(s)
[ Info: Generating MCL clusters...
[ Info: Starting MCL iterations...
[ Info: MCL converged after 0 iteration(s)
[ Info: Generating MCL clusters...
Test Summary: | Pass  Broken  Total
MCL           |   33       1     34
* vmeasure.jl ...
Test Summary: | Pass  Broken  Total
V-measure     |    8       1      9
* mutualinfo.jl ...
Test Summary:                     | Pass  Total
mutualinfo() (mutual information) |    4      4
   Testing Clustering tests passed 

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 5 minutes, 22 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed DataAPI ──────────── v1.1.0
 Installed Missings ─────────── v0.4.3
 Installed SortingAlgorithms ── v0.3.1
 Installed Distances ────────── v0.8.2
 Installed NearestNeighbors ─── v0.4.4
 Installed OrderedCollections ─ v1.1.0
 Installed DataStructures ───── v0.17.6
 Installed Clustering ───────── v0.13.3
 Installed StatsBase ────────── v0.32.0
 Installed StaticArrays ─────── v0.12.1
  Updating `~/.julia/environments/v1.3/Project.toml`
  [aaaa29a8] + Clustering v0.13.3
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [aaaa29a8] + Clustering v0.13.3
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [b4f34e82] + Distances v0.8.2
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [2a0f44e3] + Base64 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [de0858da] + Printf 
  [9a3f8284] + Random 
  [9e88b42a] + Serialization 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [4ec0a83e] + Unicode 
   Testing Clustering
 Resolving package versions...
 Installed CodecZlib ────────── v0.6.0
 Installed TranscodingStreams ─ v0.9.5
 Installed BinaryProvider ───── v0.5.8
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
    Status `/tmp/jl_2ZgvII/Manifest.toml`
  [b99e7846] BinaryProvider v0.5.8
  [aaaa29a8] Clustering v0.13.3
  [944b1d66] CodecZlib v0.6.0
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.6
  [b4f34e82] Distances v0.8.2
  [e1d29d7a] Missings v0.4.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Runing tests:
* seeding.jl ...
Test Summary: | Pass  Total
seeding       |   64     64
* kmeans.jl ...
  Iters               objv        objv-change | affected 
-------------------------------------------------------------
      0       1.470563e+00
      1       7.352817e-01      -7.352817e-01 |        0
      2       7.352817e-01       0.000000e+00 |        0
K-means converged with 2 iterations (objv = 0.7352816593329847)
K-means converged with 2 iterations (objv = 0.09164881001248792)
┌ Warning: The clustering cost increased at iteration #1
└ @ Clustering ~/.julia/packages/Clustering/Dlx92/src/kmeans.jl:179
Test Summary:      | Pass  Total
kmeans() (k-means) |   87     87
* kmedoids.jl ...
  Iters               objv        objv-change
-----------------------------------------------------
      0       1.589132e+00
      1       1.623600e+00       3.446832e-02
      2       1.623600e+00       0.000000e+00
K-medoids converged with 2 iterations (objv = 1.6236002870003423)
K-medoids converged with 2 iterations (objv = 1.6236002870003423)
Test Summary:          | Pass  Total
kmedoids() (k-medoids) |   26     26
* affprop.jl ...
  Iters  objv-change | exemplars 
-----------------------------------------------------
      1   1.7243e+00 |        1
      2   1.1599e+00 |        1
      3   1.0111e+00 |        1
      4   8.2884e-01 |        1
      5   6.2996e-01 |        1
      6   4.4970e-01 |        1
      7   3.0568e-01 |        1
      8   1.9999e-01 |        1
      9   1.2694e-01 |        1
     10   7.8624e-02 |        1
Affinity propagation converged with 10 iterations: 1 exemplars.
Affinity propagation converged with 9 iterations: 1 exemplars.
Test Summary:                         | Pass  Total
affinityprop() (affinity propagation) |   78     78
* dbscan.jl ...
Test Summary:                | Pass  Total
dbscan() (DBSCAN clustering) |   19     19
* fuzzycmeans.jl ...
  Iters      center-change
----------------------------
      1       5.244585e-01
      2       1.013155e-01
      3       2.621402e-01
      4       2.313798e-01
      5       3.691017e-02
Fuzzy C-means converged with 5 iterations (δ = 0.036910170483319474)
Fuzzy C-means converged with 6 iterations (δ = 0.052544440650040276)
Test Summary:  | Pass  Total
fuzzy_cmeans() |   36     36
* counts.jl ...
Test Summary:                 | Pass  Total
counts() (contingency matrix) |   22     22
* silhouette.jl ...
Test Summary: | Pass  Broken  Total
silhouettes() |   11       1     12
* varinfo.jl ...
Test Summary:                       | Pass  Total
varinfo() (variational information) |    7      7
* randindex.jl ...
Test Summary:            | Pass  Total
randindex() (Rand index) |   13     13
* hclust.jl ...
Test Summary:                      | Pass  Total
hclust() (hierarchical clustering) | 6665   6665
* mcl.jl ...
[ Info: Starting MCL iterations...
┌ Info: MCL iter. #0: rel.Δ=
└   rel_delta = 0.0
[ Info: MCL converged after 0 iteration(s)
[ Info: Generating MCL clusters...
[ Info: Starting MCL iterations...
[ Info: MCL converged after 0 iteration(s)
[ Info: Generating MCL clusters...
Test Summary: | Pass  Broken  Total
MCL           |   33       1     34
* vmeasure.jl ...
Test Summary: | Pass  Broken  Total
V-measure     |    8       1      9
* mutualinfo.jl ...
Test Summary:                     | Pass  Total
mutualinfo() (mutual information) |    4      4
   Testing Clustering tests passed 

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 7 minutes, 48 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed DataAPI ──────────── v1.1.0
 Installed Distances ────────── v0.8.2
 Installed NearestNeighbors ─── v0.4.4
 Installed OrderedCollections ─ v1.1.0
 Installed DataStructures ───── v0.17.6
 Installed StaticArrays ─────── v0.12.1
 Installed StatsBase ────────── v0.32.0
 Installed Clustering ───────── v0.13.3
 Installed Missings ─────────── v0.4.3
 Installed SortingAlgorithms ── v0.3.1
  Updating `~/.julia/environments/v1.3/Project.toml`
  [aaaa29a8] + Clustering v0.13.3
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [aaaa29a8] + Clustering v0.13.3
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [b4f34e82] + Distances v0.8.2
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [bac558e1] + OrderedCollections v1.1.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [2a0f44e3] + Base64 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [de0858da] + Printf 
  [9a3f8284] + Random 
  [9e88b42a] + Serialization 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [4ec0a83e] + Unicode 
   Testing Clustering
 Resolving package versions...
 Installed CodecZlib ────────── v0.6.0
 Installed BinaryProvider ───── v0.5.8
 Installed TranscodingStreams ─ v0.9.5
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
    Status `/tmp/jl_UX2Bue/Manifest.toml`
  [b99e7846] BinaryProvider v0.5.8
  [aaaa29a8] Clustering v0.13.3
  [944b1d66] CodecZlib v0.6.0
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.6
  [b4f34e82] Distances v0.8.2
  [e1d29d7a] Missings v0.4.3
  [b8a86587] NearestNeighbors v0.4.4
  [bac558e1] OrderedCollections v1.1.0
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.1
  [2913bbd2] StatsBase v0.32.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Runing tests:
* seeding.jl ...
Test Summary: | Pass  Total
seeding       |   64     64
* kmeans.jl ...
  Iters               objv        objv-change | affected 
-------------------------------------------------------------
      0       1.470563e+00
      1       7.352817e-01      -7.352817e-01 |        0
      2       7.352817e-01       0.000000e+00 |        0
K-means converged with 2 iterations (objv = 0.7352816593329847)
K-means converged with 2 iterations (objv = 0.09164881001248792)
┌ Warning: The clustering cost increased at iteration #1
└ @ Clustering ~/.julia/packages/Clustering/Dlx92/src/kmeans.jl:179
Test Summary:      | Pass  Total
kmeans() (k-means) |   87     87
* kmedoids.jl ...
  Iters               objv        objv-change
-----------------------------------------------------
      0       1.589132e+00
      1       1.623600e+00       3.446832e-02
      2       1.623600e+00       0.000000e+00
K-medoids converged with 2 iterations (objv = 1.6236002870003423)
K-medoids converged with 2 iterations (objv = 1.6236002870003423)
Test Summary:          | Pass  Total
kmedoids() (k-medoids) |   26     26
* affprop.jl ...
  Iters  objv-change | exemplars 
-----------------------------------------------------
      1   1.7243e+00 |        1
      2   1.1599e+00 |        1
      3   1.0111e+00 |        1
      4   8.2884e-01 |        1
      5   6.2996e-01 |        1
      6   4.4970e-01 |        1
      7   3.0568e-01 |        1
      8   1.9999e-01 |        1
      9   1.2694e-01 |        1
     10   7.8624e-02 |        1
Affinity propagation converged with 10 iterations: 1 exemplars.
Affinity propagation converged with 9 iterations: 1 exemplars.
Test Summary:                         | Pass  Total
affinityprop() (affinity propagation) |   78     78
* dbscan.jl ...
Test Summary:                | Pass  Total
dbscan() (DBSCAN clustering) |   19     19
* fuzzycmeans.jl ...
  Iters      center-change
----------------------------
      1       5.244585e-01
      2       1.013155e-01
      3       2.621402e-01
      4       2.313798e-01
      5       3.691017e-02
Fuzzy C-means converged with 5 iterations (δ = 0.036910170483319474)
Fuzzy C-means converged with 6 iterations (δ = 0.052544440650040276)
Test Summary:  | Pass  Total
fuzzy_cmeans() |   36     36
* counts.jl ...
Test Summary:                 | Pass  Total
counts() (contingency matrix) |   22     22
* silhouette.jl ...
Test Summary: | Pass  Broken  Total
silhouettes() |   11       1     12
* varinfo.jl ...
Test Summary:                       | Pass  Total
varinfo() (variational information) |    7      7
* randindex.jl ...
Test Summary:            | Pass  Total
randindex() (Rand index) |   13     13
* hclust.jl ...
Test Summary:                      | Pass  Total
hclust() (hierarchical clustering) | 6665   6665
* mcl.jl ...
[ Info: Starting MCL iterations...
┌ Info: MCL iter. #0: rel.Δ=
└   rel_delta = 0.0
[ Info: MCL converged after 0 iteration(s)
[ Info: Generating MCL clusters...
[ Info: Starting MCL iterations...
[ Info: MCL converged after 0 iteration(s)
[ Info: Generating MCL clusters...
Test Summary: | Pass  Broken  Total
MCL           |   33       1     34
* vmeasure.jl ...
Test Summary: | Pass  Broken  Total
V-measure     |    8       1      9
* mutualinfo.jl ...
Test Summary:                     | Pass  Total
mutualinfo() (mutual information) |    4      4
   Testing Clustering tests passed