CancerSeqSim

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If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.

Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 6 minutes, 5 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed DataAPI ───────────────────── v1.1.0
 Installed Missings ──────────────────── v0.4.3
 Installed PDMats ────────────────────── v0.9.10
 Installed TableTraits ───────────────── v1.0.0
 Installed CancerSeqSim ──────────────── v0.2.0
 Installed BinaryProvider ────────────── v0.5.8
 Installed StatsBase ─────────────────── v0.32.0
 Installed DataFrames ────────────────── v0.19.4
 Installed StatsFuns ─────────────────── v0.9.0
 Installed URIParser ─────────────────── v0.4.0
 Installed DataValueInterfaces ───────── v1.0.0
 Installed InvertedIndices ───────────── v1.0.0
 Installed Polynomials ───────────────── v0.6.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed Reexport ──────────────────── v0.2.0
 Installed HypothesisTests ───────────── v0.8.0
 Installed Compat ────────────────────── v2.2.0
 Installed OrderedCollections ────────── v1.1.0
 Installed Tables ────────────────────── v0.2.11
 Installed Rmath ─────────────────────── v0.5.1
 Installed Roots ─────────────────────── v0.8.3
 Installed GLM ───────────────────────── v1.3.4
 Installed Parsers ───────────────────── v0.3.10
 Installed RecipesBase ───────────────── v0.7.0
 Installed Combinatorics ─────────────── v0.7.0
 Installed DataStructures ────────────── v0.17.6
 Installed ShiftedArrays ─────────────── v1.0.0
 Installed StatsModels ───────────────── v0.6.7
 Installed Distributions ─────────────── v0.21.9
 Installed JSON ──────────────────────── v0.21.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed QuadGK ────────────────────── v2.1.1
 Installed CategoricalArrays ─────────── v0.7.3
 Installed BinDeps ───────────────────── v0.8.10
 Installed ProgressMeter ─────────────── v0.9.0
 Installed SpecialFunctions ──────────── v0.8.0
 Installed Arpack ────────────────────── v0.3.1
  Updating `~/.julia/environments/v1.2/Project.toml`
  [c7b3ebfe] + CancerSeqSim v0.2.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [7d9fca2a] + Arpack v0.3.1
  [9e28174c] + BinDeps v0.8.10
  [b99e7846] + BinaryProvider v0.5.8
  [c7b3ebfe] + CancerSeqSim v0.2.0
  [324d7699] + CategoricalArrays v0.7.3
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] + Distributions v0.21.9
  [38e38edf] + GLM v1.3.4
  [09f84164] + HypothesisTests v0.8.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.1.0
  [90014a1f] + PDMats v0.9.10
  [69de0a69] + Parsers v0.3.10
  [f27b6e38] + Polynomials v0.6.0
  [2dfb63ee] + PooledArrays v0.5.2
  [92933f4c] + ProgressMeter v0.9.0
  [1fd47b50] + QuadGK v2.1.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [79098fc4] + Rmath v0.5.1
  [f2b01f46] + Roots v0.8.3
  [1277b4bf] + ShiftedArrays v1.0.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.8.0
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.9.0
  [3eaba693] + StatsModels v0.6.7
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [30578b45] + URIParser v0.4.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
  Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
   Testing CancerSeqSim
    Status `/tmp/jl_ddO8Xm/Manifest.toml`
  [7d9fca2a] Arpack v0.3.1
  [9e28174c] BinDeps v0.8.10
  [b99e7846] BinaryProvider v0.5.8
  [c7b3ebfe] CancerSeqSim v0.2.0
  [324d7699] CategoricalArrays v0.7.3
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [31c24e10] Distributions v0.21.9
  [38e38edf] GLM v1.3.4
  [09f84164] HypothesisTests v0.8.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [90014a1f] PDMats v0.9.10
  [69de0a69] Parsers v0.3.10
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [92933f4c] ProgressMeter v0.9.0
  [1fd47b50] QuadGK v2.1.1
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [79098fc4] Rmath v0.5.1
  [f2b01f46] Roots v0.8.3
  [1277b4bf] ShiftedArrays v1.0.0
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [2913bbd2] StatsBase v0.32.0
  [4c63d2b9] StatsFuns v0.9.0
  [3eaba693] StatsModels v0.6.7
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [30578b45] URIParser v0.4.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [4607b0f0] SuiteSparse  [`@stdlib/SuiteSparse`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Running tests ...
* test_frequency.jl ...
* test_simulation.jl ...
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:123
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:123
* test_diffmutations.jl ...
0.6862157087543459
0.6175941378789114
0.5002512516819183
0.4502261265137265
0.4011514787237302
0.35385170786741527
0.35031319078874124
0.38534450986761537
0.38534450986761537
0.46626685693981446
  0.473825 seconds (575.65 k allocations: 30.976 MiB, 4.07% gc time)
  0.005106 seconds (21.41 k allocations: 3.527 MiB)
  0.000041 seconds (12 allocations: 416 bytes)
  0.755140 seconds (1.21 M allocations: 60.701 MiB, 4.39% gc time)
  0.000031 seconds (12 allocations: 416 bytes)
   Testing CancerSeqSim tests passed

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 5 minutes, 48 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed URIParser ─────────────────── v0.4.0
 Installed Roots ─────────────────────── v0.8.3
 Installed CancerSeqSim ──────────────── v0.2.0
 Installed Arpack ────────────────────── v0.3.1
 Installed QuadGK ────────────────────── v2.1.1
 Installed DataStructures ────────────── v0.17.6
 Installed CategoricalArrays ─────────── v0.7.3
 Installed Compat ────────────────────── v2.2.0
 Installed Missings ──────────────────── v0.4.3
 Installed ProgressMeter ─────────────── v0.9.0
 Installed BinaryProvider ────────────── v0.5.8
 Installed Parsers ───────────────────── v0.3.10
 Installed StatsFuns ─────────────────── v0.9.0
 Installed HypothesisTests ───────────── v0.8.0
 Installed InvertedIndices ───────────── v1.0.0
 Installed Distributions ─────────────── v0.21.9
 Installed Combinatorics ─────────────── v0.7.0
 Installed TableTraits ───────────────── v1.0.0
 Installed Rmath ─────────────────────── v0.5.1
 Installed SpecialFunctions ──────────── v0.8.0
 Installed OrderedCollections ────────── v1.1.0
 Installed RecipesBase ───────────────── v0.7.0
 Installed JSON ──────────────────────── v0.21.0
 Installed DataAPI ───────────────────── v1.1.0
 Installed BinDeps ───────────────────── v0.8.10
 Installed ShiftedArrays ─────────────── v1.0.0
 Installed Tables ────────────────────── v0.2.11
 Installed DataValueInterfaces ───────── v1.0.0
 Installed PooledArrays ──────────────── v0.5.2
 Installed Polynomials ───────────────── v0.6.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed StatsModels ───────────────── v0.6.7
 Installed GLM ───────────────────────── v1.3.4
 Installed DataFrames ────────────────── v0.19.4
 Installed Reexport ──────────────────── v0.2.0
 Installed PDMats ────────────────────── v0.9.10
 Installed StatsBase ─────────────────── v0.32.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [c7b3ebfe] + CancerSeqSim v0.2.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [7d9fca2a] + Arpack v0.3.1
  [9e28174c] + BinDeps v0.8.10
  [b99e7846] + BinaryProvider v0.5.8
  [c7b3ebfe] + CancerSeqSim v0.2.0
  [324d7699] + CategoricalArrays v0.7.3
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] + Distributions v0.21.9
  [38e38edf] + GLM v1.3.4
  [09f84164] + HypothesisTests v0.8.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.1.0
  [90014a1f] + PDMats v0.9.10
  [69de0a69] + Parsers v0.3.10
  [f27b6e38] + Polynomials v0.6.0
  [2dfb63ee] + PooledArrays v0.5.2
  [92933f4c] + ProgressMeter v0.9.0
  [1fd47b50] + QuadGK v2.1.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [79098fc4] + Rmath v0.5.1
  [f2b01f46] + Roots v0.8.3
  [1277b4bf] + ShiftedArrays v1.0.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.8.0
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.9.0
  [3eaba693] + StatsModels v0.6.7
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [30578b45] + URIParser v0.4.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
  Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
   Testing CancerSeqSim
    Status `/tmp/jl_BL6gpc/Manifest.toml`
  [7d9fca2a] Arpack v0.3.1
  [9e28174c] BinDeps v0.8.10
  [b99e7846] BinaryProvider v0.5.8
  [c7b3ebfe] CancerSeqSim v0.2.0
  [324d7699] CategoricalArrays v0.7.3
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [31c24e10] Distributions v0.21.9
  [38e38edf] GLM v1.3.4
  [09f84164] HypothesisTests v0.8.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [90014a1f] PDMats v0.9.10
  [69de0a69] Parsers v0.3.10
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [92933f4c] ProgressMeter v0.9.0
  [1fd47b50] QuadGK v2.1.1
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [79098fc4] Rmath v0.5.1
  [f2b01f46] Roots v0.8.3
  [1277b4bf] ShiftedArrays v1.0.0
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [2913bbd2] StatsBase v0.32.0
  [4c63d2b9] StatsFuns v0.9.0
  [3eaba693] StatsModels v0.6.7
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [30578b45] URIParser v0.4.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [4607b0f0] SuiteSparse  [`@stdlib/SuiteSparse`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Running tests ...
* test_frequency.jl ...
* test_simulation.jl ...
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:123
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:123
* test_diffmutations.jl ...
0.6862157087543459
0.6175941378789114
0.5002512516819183
0.4502261265137265
0.4011514787237302
0.35385170786741527
0.35031319078874124
0.38534450986761537
0.38534450986761537
0.46626685693981446
  0.436554 seconds (503.71 k allocations: 27.180 MiB)
  0.005309 seconds (21.41 k allocations: 3.527 MiB)
  0.000033 seconds (12 allocations: 416 bytes)
  0.708626 seconds (1.13 M allocations: 55.952 MiB)
  0.000037 seconds (12 allocations: 416 bytes)
   Testing CancerSeqSim tests passed

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 5 minutes, 41 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed Tables ────────────────────── v0.2.11
 Installed CancerSeqSim ──────────────── v0.2.0
 Installed StatsModels ───────────────── v0.6.7
 Installed QuadGK ────────────────────── v2.1.1
 Installed Polynomials ───────────────── v0.6.0
 Installed DataStructures ────────────── v0.17.6
 Installed SpecialFunctions ──────────── v0.8.0
 Installed DataFrames ────────────────── v0.19.4
 Installed Compat ────────────────────── v2.2.0
 Installed BinDeps ───────────────────── v0.8.10
 Installed Roots ─────────────────────── v0.8.3
 Installed StatsBase ─────────────────── v0.32.0
 Installed TableTraits ───────────────── v1.0.0
 Installed ShiftedArrays ─────────────── v1.0.0
 Installed Missings ──────────────────── v0.4.3
 Installed URIParser ─────────────────── v0.4.0
 Installed Arpack ────────────────────── v0.3.1
 Installed PooledArrays ──────────────── v0.5.2
 Installed BinaryProvider ────────────── v0.5.8
 Installed StatsFuns ─────────────────── v0.9.0
 Installed GLM ───────────────────────── v1.3.4
 Installed InvertedIndices ───────────── v1.0.0
 Installed Rmath ─────────────────────── v0.5.1
 Installed HypothesisTests ───────────── v0.8.0
 Installed DataValueInterfaces ───────── v1.0.0
 Installed Reexport ──────────────────── v0.2.0
 Installed Combinatorics ─────────────── v0.7.0
 Installed Distributions ─────────────── v0.21.9
 Installed ProgressMeter ─────────────── v0.9.0
 Installed CategoricalArrays ─────────── v0.7.3
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed RecipesBase ───────────────── v0.7.0
 Installed PDMats ────────────────────── v0.9.10
 Installed JSON ──────────────────────── v0.21.0
 Installed OrderedCollections ────────── v1.1.0
 Installed Parsers ───────────────────── v0.3.10
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed DataAPI ───────────────────── v1.1.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [c7b3ebfe] + CancerSeqSim v0.2.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [7d9fca2a] + Arpack v0.3.1
  [9e28174c] + BinDeps v0.8.10
  [b99e7846] + BinaryProvider v0.5.8
  [c7b3ebfe] + CancerSeqSim v0.2.0
  [324d7699] + CategoricalArrays v0.7.3
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.19.4
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] + Distributions v0.21.9
  [38e38edf] + GLM v1.3.4
  [09f84164] + HypothesisTests v0.8.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.1.0
  [90014a1f] + PDMats v0.9.10
  [69de0a69] + Parsers v0.3.10
  [f27b6e38] + Polynomials v0.6.0
  [2dfb63ee] + PooledArrays v0.5.2
  [92933f4c] + ProgressMeter v0.9.0
  [1fd47b50] + QuadGK v2.1.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [79098fc4] + Rmath v0.5.1
  [f2b01f46] + Roots v0.8.3
  [1277b4bf] + ShiftedArrays v1.0.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.8.0
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.9.0
  [3eaba693] + StatsModels v0.6.7
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [30578b45] + URIParser v0.4.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
  Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
  Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
   Testing CancerSeqSim
    Status `/tmp/jl_lqJubL/Manifest.toml`
  [7d9fca2a] Arpack v0.3.1
  [9e28174c] BinDeps v0.8.10
  [b99e7846] BinaryProvider v0.5.8
  [c7b3ebfe] CancerSeqSim v0.2.0
  [324d7699] CategoricalArrays v0.7.3
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.19.4
  [864edb3b] DataStructures v0.17.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [31c24e10] Distributions v0.21.9
  [38e38edf] GLM v1.3.4
  [09f84164] HypothesisTests v0.8.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [90014a1f] PDMats v0.9.10
  [69de0a69] Parsers v0.3.10
  [f27b6e38] Polynomials v0.6.0
  [2dfb63ee] PooledArrays v0.5.2
  [92933f4c] ProgressMeter v0.9.0
  [1fd47b50] QuadGK v2.1.1
  [3cdcf5f2] RecipesBase v0.7.0
  [189a3867] Reexport v0.2.0
  [79098fc4] Rmath v0.5.1
  [f2b01f46] Roots v0.8.3
  [1277b4bf] ShiftedArrays v1.0.0
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [2913bbd2] StatsBase v0.32.0
  [4c63d2b9] StatsFuns v0.9.0
  [3eaba693] StatsModels v0.6.7
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v0.2.11
  [30578b45] URIParser v0.4.0
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [9fa8497b] Future  [`@stdlib/Future`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [4607b0f0] SuiteSparse  [`@stdlib/SuiteSparse`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Running tests ...
* test_frequency.jl ...
* test_simulation.jl ...
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:117
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:117
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:119
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:119
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:120
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:120
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│     df[!, col_ind] = v
│     df
│ end` instead.
│   caller = #cumulativedist#40(::Float64, ::Float64, ::typeof(cumulativedist), ::Simulation) at samplesim.jl:123
└ @ CancerSeqSim ~/.julia/packages/CancerSeqSim/CGiBZ/src/samplesim.jl:123
* test_diffmutations.jl ...
0.6862157087543459
0.6175941378789114
0.5002512516819183
0.4502261265137265
0.4011514787237302
0.35385170786741527
0.35031319078874124
0.38534450986761537
0.38534450986761537
0.46626685693981446
  0.563944 seconds (503.78 k allocations: 27.184 MiB)
  0.007664 seconds (21.41 k allocations: 3.527 MiB)
  0.000035 seconds (12 allocations: 416 bytes)
  0.724313 seconds (1.13 M allocations: 55.955 MiB)
  0.000035 seconds (12 allocations: 416 bytes)
   Testing CancerSeqSim tests passed