If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 4 minutes, 35 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed YAML ──────────────── v0.3.2
Installed Codecs ────────────── v0.5.0
Installed Tokenize ──────────── v0.5.7
Installed IndexableBitVectors ─ v1.0.0
Installed BioCore ───────────── v2.0.5
Installed CAOS ──────────────── v0.1.1
Installed BinaryProvider ────── v0.5.8
Installed IntervalTrees ─────── v1.0.0
Installed Polynomials ───────── v0.6.0
Installed Compat ────────────── v2.2.0
Installed URIParser ─────────── v0.4.0
Installed Twiddle ───────────── v1.1.1
Installed Libz ──────────────── v1.0.0
Installed BGZFStreams ───────── v0.3.0
Installed BioSymbols ────────── v3.1.0
Installed OrderedCollections ── v1.1.0
Installed Automa ────────────── v0.8.0
Installed RecipesBase ───────── v0.7.0
Installed DataStructures ────── v0.17.6
Installed Parsers ───────────── v0.3.10
Installed FixedPointNumbers ─── v0.5.3
Installed BioTools ──────────── v1.0.0
Installed Combinatorics ─────── v0.7.0
Installed TranscodingStreams ── v0.9.5
Installed JSON ──────────────── v0.21.0
Installed CodecZlib ─────────── v0.6.0
Installed BioAlignments ─────── v1.0.0
Installed BufferedStreams ───── v1.0.0
Installed BioSequences ──────── v1.1.0
Installed GZip ──────────────── v0.5.1
Installed EzXML ─────────────── v0.9.5
Installed GenomicFeatures ───── v1.0.0
Installed FastaIO ───────────── v0.5.0
Installed ColorTypes ────────── v0.8.0
Updating `~/.julia/environments/v1.2/Project.toml`
[84b91ece] + CAOS v0.1.1
Updating `~/.julia/environments/v1.2/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[84b91ece] + CAOS v0.1.1
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[8f5d6c58] + EzXML v0.9.5
[a0c94c4b] + FastaIO v0.5.0
[53c48c17] + FixedPointNumbers v0.5.3
[92fee26a] + GZip v0.5.1
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[0796e94c] + Tokenize v0.5.7
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Testing CAOS
Status `/tmp/jl_oLi2UF/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[84b91ece] CAOS v0.1.1
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[8f5d6c58] EzXML v0.9.5
[a0c94c4b] FastaIO v0.5.0
[53c48c17] FixedPointNumbers v0.5.3
[92fee26a] GZip v0.5.1
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.0
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[0796e94c] Tokenize v0.5.7
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Running tests:
-----------------------------------------
Testing: Tree functions
Test Summary: | Pass Total
tree_functions | 80 80
-----------------------------------------
Testing: Classification
classification: Error During Test at /root/.julia/packages/CAOS/NDV79/test/classification.jl:1
Got exception outside of a @test
IOError: could not spawn `makeblastdb -in data/output/char_labels.fasta -dbtype nucl`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #run#536(::Bool, ::typeof(run), ::Cmd) at ./process.jl:727
[6] run at ./process.jl:726 [inlined]
[7] #generate_caos_rules#27(::Bool, ::typeof(CAOS.generate_caos_rules), ::String, ::String) at /root/.julia/packages/CAOS/NDV79/src/user_functions.jl:48
[8] generate_caos_rules(::String, ::String) at /root/.julia/packages/CAOS/NDV79/src/user_functions.jl:14
[9] top-level scope at /root/.julia/packages/CAOS/NDV79/test/classification.jl:3
[10] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[11] top-level scope at /root/.julia/packages/CAOS/NDV79/test/classification.jl:3
[12] include at ./boot.jl:328 [inlined]
[13] include_relative(::Module, ::String) at ./loading.jl:1094
[14] include at ./Base.jl:31 [inlined]
[15] include(::String) at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:1
[16] top-level scope at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:21
[17] include at ./boot.jl:328 [inlined]
[18] include_relative(::Module, ::String) at ./loading.jl:1094
[19] include(::Module, ::String) at ./Base.jl:31
[20] include(::String) at ./client.jl:431
[21] top-level scope at none:5
[22] eval(::Module, ::Any) at ./boot.jl:330
[23] exec_options(::Base.JLOptions) at ./client.jl:271
[24] _start() at ./client.jl:464
Test Summary: | Error Total
classification | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/CAOS/NDV79/test/classification.jl:1
in expression starting at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:18
ERROR: Package CAOS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 4 minutes, 15 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed URIParser ─────────── v0.4.0
Installed YAML ──────────────── v0.3.2
Installed GZip ──────────────── v0.5.1
Installed CAOS ──────────────── v0.1.1
Installed BioSymbols ────────── v3.1.0
Installed DataStructures ────── v0.17.6
Installed BinaryProvider ────── v0.5.8
Installed GenomicFeatures ───── v1.0.0
Installed FastaIO ───────────── v0.5.0
Installed Combinatorics ─────── v0.7.0
Installed Parsers ───────────── v0.3.10
Installed Libz ──────────────── v1.0.0
Installed Compat ────────────── v2.2.0
Installed FixedPointNumbers ─── v0.5.3
Installed OrderedCollections ── v1.1.0
Installed IndexableBitVectors ─ v1.0.0
Installed RecipesBase ───────── v0.7.0
Installed JSON ──────────────── v0.21.0
Installed ColorTypes ────────── v0.8.0
Installed Codecs ────────────── v0.5.0
Installed BGZFStreams ───────── v0.3.0
Installed Automa ────────────── v0.8.0
Installed BioSequences ──────── v1.1.0
Installed Polynomials ───────── v0.6.0
Installed EzXML ─────────────── v0.9.5
Installed IntervalTrees ─────── v1.0.0
Installed CodecZlib ─────────── v0.6.0
Installed Tokenize ──────────── v0.5.7
Installed BioTools ──────────── v1.0.0
Installed BioCore ───────────── v2.0.5
Installed BioAlignments ─────── v1.0.0
Installed Twiddle ───────────── v1.1.1
Installed BufferedStreams ───── v1.0.0
Installed TranscodingStreams ── v0.9.5
Updating `~/.julia/environments/v1.3/Project.toml`
[84b91ece] + CAOS v0.1.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[84b91ece] + CAOS v0.1.1
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[8f5d6c58] + EzXML v0.9.5
[a0c94c4b] + FastaIO v0.5.0
[53c48c17] + FixedPointNumbers v0.5.3
[92fee26a] + GZip v0.5.1
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[0796e94c] + Tokenize v0.5.7
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing CAOS
Status `/tmp/jl_MbJAhm/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[84b91ece] CAOS v0.1.1
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[8f5d6c58] EzXML v0.9.5
[a0c94c4b] FastaIO v0.5.0
[53c48c17] FixedPointNumbers v0.5.3
[92fee26a] GZip v0.5.1
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.0
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[0796e94c] Tokenize v0.5.7
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Running tests:
-----------------------------------------
Testing: Tree functions
Test Summary: | Pass Total
tree_functions | 80 80
-----------------------------------------
Testing: Classification
classification: Error During Test at /root/.julia/packages/CAOS/NDV79/test/classification.jl:1
Got exception outside of a @test
IOError: could not spawn `makeblastdb -in data/output/char_labels.fasta -dbtype nucl`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #run#565(::Bool, ::typeof(run), ::Cmd) at ./process.jl:439
[6] run at ./process.jl:438 [inlined]
[7] #generate_caos_rules#27(::Bool, ::typeof(CAOS.generate_caos_rules), ::String, ::String) at /root/.julia/packages/CAOS/NDV79/src/user_functions.jl:48
[8] generate_caos_rules(::String, ::String) at /root/.julia/packages/CAOS/NDV79/src/user_functions.jl:14
[9] top-level scope at /root/.julia/packages/CAOS/NDV79/test/classification.jl:3
[10] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[11] top-level scope at /root/.julia/packages/CAOS/NDV79/test/classification.jl:3
[12] include at ./boot.jl:328 [inlined]
[13] include_relative(::Module, ::String) at ./loading.jl:1105
[14] include at ./Base.jl:31 [inlined]
[15] include(::String) at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:1
[16] top-level scope at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:21
[17] include at ./boot.jl:328 [inlined]
[18] include_relative(::Module, ::String) at ./loading.jl:1105
[19] include(::Module, ::String) at ./Base.jl:31
[20] include(::String) at ./client.jl:424
[21] top-level scope at none:6
[22] eval(::Module, ::Any) at ./boot.jl:330
[23] exec_options(::Base.JLOptions) at ./client.jl:263
[24] _start() at ./client.jl:460
Test Summary: | Error Total
classification | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/CAOS/NDV79/test/classification.jl:1
in expression starting at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:18
ERROR: Package CAOS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 6 minutes, 37 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed ColorTypes ────────── v0.8.0
Installed Compat ────────────── v2.2.0
Installed CAOS ──────────────── v0.1.1
Installed BioCore ───────────── v2.0.5
Installed Polynomials ───────── v0.6.0
Installed DataStructures ────── v0.17.6
Installed Automa ────────────── v0.8.0
Installed IntervalTrees ─────── v1.0.0
Installed Libz ──────────────── v1.0.0
Installed BufferedStreams ───── v1.0.0
Installed BioSymbols ────────── v3.1.0
Installed CodecZlib ─────────── v0.6.0
Installed YAML ──────────────── v0.3.2
Installed FixedPointNumbers ─── v0.5.3
Installed URIParser ─────────── v0.4.0
Installed BioAlignments ─────── v1.0.0
Installed TranscodingStreams ── v0.9.5
Installed GZip ──────────────── v0.5.1
Installed Twiddle ───────────── v1.1.1
Installed Tokenize ──────────── v0.5.7
Installed BinaryProvider ────── v0.5.8
Installed Codecs ────────────── v0.5.0
Installed EzXML ─────────────── v0.9.5
Installed Combinatorics ─────── v0.7.0
Installed BioTools ──────────── v1.0.0
Installed RecipesBase ───────── v0.7.0
Installed GenomicFeatures ───── v1.0.0
Installed FastaIO ───────────── v0.5.0
Installed JSON ──────────────── v0.21.0
Installed OrderedCollections ── v1.1.0
Installed Parsers ───────────── v0.3.10
Installed BioSequences ──────── v1.1.0
Installed IndexableBitVectors ─ v1.0.0
Installed BGZFStreams ───────── v0.3.0
Updating `~/.julia/environments/v1.3/Project.toml`
[84b91ece] + CAOS v0.1.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[84b91ece] + CAOS v0.1.1
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[8f5d6c58] + EzXML v0.9.5
[a0c94c4b] + FastaIO v0.5.0
[53c48c17] + FixedPointNumbers v0.5.3
[92fee26a] + GZip v0.5.1
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[0796e94c] + Tokenize v0.5.7
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Testing CAOS
Status `/tmp/jl_rXChsK/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[84b91ece] CAOS v0.1.1
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[8f5d6c58] EzXML v0.9.5
[a0c94c4b] FastaIO v0.5.0
[53c48c17] FixedPointNumbers v0.5.3
[92fee26a] GZip v0.5.1
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.0
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[0796e94c] Tokenize v0.5.7
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Running tests:
-----------------------------------------
Testing: Tree functions
Test Summary: | Pass Total
tree_functions | 80 80
-----------------------------------------
Testing: Classification
classification: Error During Test at /root/.julia/packages/CAOS/NDV79/test/classification.jl:1
Got exception outside of a @test
IOError: could not spawn `makeblastdb -in data/output/char_labels.fasta -dbtype nucl`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #run#565(::Bool, ::typeof(run), ::Cmd) at ./process.jl:439
[6] run at ./process.jl:438 [inlined]
[7] #generate_caos_rules#27(::Bool, ::typeof(CAOS.generate_caos_rules), ::String, ::String) at /root/.julia/packages/CAOS/NDV79/src/user_functions.jl:48
[8] generate_caos_rules(::String, ::String) at /root/.julia/packages/CAOS/NDV79/src/user_functions.jl:14
[9] top-level scope at /root/.julia/packages/CAOS/NDV79/test/classification.jl:3
[10] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[11] top-level scope at /root/.julia/packages/CAOS/NDV79/test/classification.jl:3
[12] include at ./boot.jl:328 [inlined]
[13] include_relative(::Module, ::String) at ./loading.jl:1105
[14] include at ./Base.jl:31 [inlined]
[15] include(::String) at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:1
[16] top-level scope at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:21
[17] include at ./boot.jl:328 [inlined]
[18] include_relative(::Module, ::String) at ./loading.jl:1105
[19] include(::Module, ::String) at ./Base.jl:31
[20] include(::String) at ./client.jl:424
[21] top-level scope at none:6
[22] eval(::Module, ::Any) at ./boot.jl:330
[23] exec_options(::Base.JLOptions) at ./client.jl:263
[24] _start() at ./client.jl:460
Test Summary: | Error Total
classification | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/CAOS/NDV79/test/classification.jl:1
in expression starting at /root/.julia/packages/CAOS/NDV79/test/runtests.jl:18
ERROR: Package CAOS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10