If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 6 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed OptimBase ──────────── v2.0.0
Installed Missings ───────────── v0.4.3
Installed PDMats ─────────────── v0.9.10
Installed Biomodelling ───────── v0.2.1
Installed DataAPI ────────────── v1.1.0
Installed CommonSubexpressions ─ v0.2.0
Installed BinaryProvider ─────── v0.5.8
Installed StatsBase ──────────── v0.32.0
Installed Conda ──────────────── v1.3.0
Installed ExcelReaders ───────── v0.11.0
Installed DataValueInterfaces ── v1.0.0
Installed StatsFuns ──────────── v0.9.0
Installed Requires ───────────── v0.5.2
Installed LsqFit ─────────────── v0.8.1
Installed URIParser ──────────── v0.4.0
Installed NLSolversBase ──────── v7.5.0
Installed Reexport ───────────── v0.2.0
Installed OrderedCollections ─── v1.1.0
Installed PyCall ─────────────── v1.91.2
Installed Compat ─────────────── v2.2.0
Installed Rmath ──────────────── v0.5.1
Installed ForwardDiff ────────── v0.10.7
Installed Calculus ───────────── v0.5.1
Installed DataStructures ─────── v0.17.6
Installed Distributions ──────── v0.21.9
Installed DiffEqDiffTools ────── v1.5.0
Installed Parsers ────────────── v0.3.10
Installed DiffRules ──────────── v0.1.0
Installed ArrayInterface ─────── v2.0.0
Installed StaticArrays ───────── v0.12.1
Installed NaNMath ────────────── v0.3.3
Installed JSON ───────────────── v0.21.0
Installed DiffResults ────────── v0.0.4
Installed QuadGK ─────────────── v2.1.1
Installed PoissonRandom ──────── v0.4.0
Installed DataValues ─────────── v0.4.12
Installed SortingAlgorithms ──── v0.3.1
Installed SpecialFunctions ───── v0.8.0
Installed BinDeps ────────────── v0.8.10
Installed MacroTools ─────────── v0.5.2
Installed VersionParsing ─────── v1.1.3
Installed Arpack ─────────────── v0.3.1
Updating `~/.julia/environments/v1.2/Project.toml`
[9f4c04fe] + Biomodelling v0.2.1
Updating `~/.julia/environments/v1.2/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[9f4c04fe] + Biomodelling v0.2.1
[49dc2e85] + Calculus v0.5.1
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[c04bee98] + ExcelReaders v0.11.0
[f6369f11] + ForwardDiff v0.10.7
[682c06a0] + JSON v0.21.0
[2fda8390] + LsqFit v0.8.1
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[87e2bd06] + OptimBase v2.0.0
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[e409e4f3] + PoissonRandom v0.4.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing Biomodelling
Status `/tmp/jl_fRQ3sM/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[9f4c04fe] Biomodelling v0.2.1
[49dc2e85] Calculus v0.5.1
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[c04bee98] ExcelReaders v0.11.0
[f6369f11] ForwardDiff v0.10.7
[682c06a0] JSON v0.21.0
[2fda8390] LsqFit v0.8.1
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[87e2bd06] OptimBase v2.0.0
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[69de0a69] Parsers v0.3.10
[e409e4f3] PoissonRandom v0.4.0
[438e738f] PyCall v1.91.2
[1fd47b50] QuadGK v2.1.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package xlrd could not be found by pyimport. Usually this means
that you did not install xlrd in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the xlrd module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the xlrd module, you can use `pyimport_conda("xlrd", PKG)`,
where PKG is the Anaconda package the contains the module xlrd,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'xlrd'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /root/.julia/packages/ExcelReaders/PgE1r/src/ExcelReaders.jl:12
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:685
[6] _require_from_serialized(::String) at ./loading.jl:736
[7] _require(::Base.PkgId) at ./loading.jl:1023
[8] require(::Base.PkgId) at ./loading.jl:911
[9] require(::Module, ::Symbol) at ./loading.jl:906
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1094
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:431
[14] top-level scope at none:5
during initialization of module ExcelReaders
in expression starting at /root/.julia/packages/Biomodelling/GiJJK/test/runtests.jl:1
ERROR: Package Biomodelling errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 6 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed URIParser ──────────── v0.4.0
Installed Biomodelling ───────── v0.2.1
Installed SortingAlgorithms ──── v0.3.1
Installed DiffResults ────────── v0.0.4
Installed Arpack ─────────────── v0.3.1
Installed QuadGK ─────────────── v2.1.1
Installed DataStructures ─────── v0.17.6
Installed StaticArrays ───────── v0.12.1
Installed Parsers ────────────── v0.3.10
Installed Compat ─────────────── v2.2.0
Installed StatsFuns ──────────── v0.9.0
Installed LsqFit ─────────────── v0.8.1
Installed BinaryProvider ─────── v0.5.8
Installed NLSolversBase ──────── v7.5.0
Installed Distributions ──────── v0.21.9
Installed MacroTools ─────────── v0.5.2
Installed Missings ───────────── v0.4.3
Installed SpecialFunctions ───── v0.8.0
Installed CommonSubexpressions ─ v0.2.0
Installed OrderedCollections ─── v1.1.0
Installed Rmath ──────────────── v0.5.1
Installed JSON ───────────────── v0.21.0
Installed PyCall ─────────────── v1.91.2
Installed BinDeps ────────────── v0.8.10
Installed OptimBase ──────────── v2.0.0
Installed DataAPI ────────────── v1.1.0
Installed DataValueInterfaces ── v1.0.0
Installed NaNMath ────────────── v0.3.3
Installed DataValues ─────────── v0.4.12
Installed ForwardDiff ────────── v0.10.7
Installed DiffRules ──────────── v0.1.0
Installed DiffEqDiffTools ────── v1.5.0
Installed PoissonRandom ──────── v0.4.0
Installed Conda ──────────────── v1.3.0
Installed Calculus ───────────── v0.5.1
Installed Requires ───────────── v0.5.2
Installed ArrayInterface ─────── v2.0.0
Installed ExcelReaders ───────── v0.11.0
Installed PDMats ─────────────── v0.9.10
Installed VersionParsing ─────── v1.1.3
Installed Reexport ───────────── v0.2.0
Installed StatsBase ──────────── v0.32.0
Updating `~/.julia/environments/v1.3/Project.toml`
[9f4c04fe] + Biomodelling v0.2.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[9f4c04fe] + Biomodelling v0.2.1
[49dc2e85] + Calculus v0.5.1
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[c04bee98] + ExcelReaders v0.11.0
[f6369f11] + ForwardDiff v0.10.7
[682c06a0] + JSON v0.21.0
[2fda8390] + LsqFit v0.8.1
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[87e2bd06] + OptimBase v2.0.0
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[e409e4f3] + PoissonRandom v0.4.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing Biomodelling
Status `/tmp/jl_HlwtIX/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[9f4c04fe] Biomodelling v0.2.1
[49dc2e85] Calculus v0.5.1
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[c04bee98] ExcelReaders v0.11.0
[f6369f11] ForwardDiff v0.10.7
[682c06a0] JSON v0.21.0
[2fda8390] LsqFit v0.8.1
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[87e2bd06] OptimBase v2.0.0
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[69de0a69] Parsers v0.3.10
[e409e4f3] PoissonRandom v0.4.0
[438e738f] PyCall v1.91.2
[1fd47b50] QuadGK v2.1.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package xlrd could not be found by pyimport. Usually this means
that you did not install xlrd in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the xlrd module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the xlrd module, you can use `pyimport_conda("xlrd", PKG)`,
where PKG is the Anaconda package the contains the module xlrd,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'xlrd'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /root/.julia/packages/ExcelReaders/PgE1r/src/ExcelReaders.jl:12
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[6] _require_from_serialized(::String) at ./loading.jl:743
[7] _require(::Base.PkgId) at ./loading.jl:1034
[8] require(::Base.PkgId) at ./loading.jl:922
[9] require(::Module, ::Symbol) at ./loading.jl:917
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at none:6
during initialization of module ExcelReaders
in expression starting at /root/.julia/packages/Biomodelling/GiJJK/test/runtests.jl:1
ERROR: Package Biomodelling errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 2 minutes, 13 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed NaNMath ────────────── v0.3.3
Installed Biomodelling ───────── v0.2.1
Installed Conda ──────────────── v1.3.0
Installed PyCall ─────────────── v1.91.2
Installed QuadGK ─────────────── v2.1.1
Installed DataStructures ─────── v0.17.6
Installed SpecialFunctions ───── v0.8.0
Installed DataValues ─────────── v0.4.12
Installed BinDeps ────────────── v0.8.10
Installed Compat ─────────────── v2.2.0
Installed DiffResults ────────── v0.0.4
Installed MacroTools ─────────── v0.5.2
Installed ForwardDiff ────────── v0.10.7
Installed Arpack ─────────────── v0.3.1
Installed StaticArrays ───────── v0.12.1
Installed StatsBase ──────────── v0.32.0
Installed Calculus ───────────── v0.5.1
Installed URIParser ──────────── v0.4.0
Installed Missings ───────────── v0.4.3
Installed NLSolversBase ──────── v7.5.0
Installed StatsFuns ──────────── v0.9.0
Installed CommonSubexpressions ─ v0.2.0
Installed BinaryProvider ─────── v0.5.8
Installed Rmath ──────────────── v0.5.1
Installed PoissonRandom ──────── v0.4.0
Installed OptimBase ──────────── v2.0.0
Installed DiffRules ──────────── v0.1.0
Installed ArrayInterface ─────── v2.0.0
Installed Requires ───────────── v0.5.2
Installed DataValueInterfaces ── v1.0.0
Installed Reexport ───────────── v0.2.0
Installed JSON ───────────────── v0.21.0
Installed Distributions ──────── v0.21.9
Installed DataAPI ────────────── v1.1.0
Installed OrderedCollections ─── v1.1.0
Installed PDMats ─────────────── v0.9.10
Installed VersionParsing ─────── v1.1.3
Installed DiffEqDiffTools ────── v1.5.0
Installed Parsers ────────────── v0.3.10
Installed SortingAlgorithms ──── v0.3.1
Installed LsqFit ─────────────── v0.8.1
Installed ExcelReaders ───────── v0.11.0
Updating `~/.julia/environments/v1.3/Project.toml`
[9f4c04fe] + Biomodelling v0.2.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[9f4c04fe] + Biomodelling v0.2.1
[49dc2e85] + Calculus v0.5.1
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[c04bee98] + ExcelReaders v0.11.0
[f6369f11] + ForwardDiff v0.10.7
[682c06a0] + JSON v0.21.0
[2fda8390] + LsqFit v0.8.1
[1914dd2f] + MacroTools v0.5.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[87e2bd06] + OptimBase v2.0.0
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[e409e4f3] + PoissonRandom v0.4.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.1.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───────────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building PyCall ──────────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing Biomodelling
Status `/tmp/jl_CEa3pI/Manifest.toml`
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[9f4c04fe] Biomodelling v0.2.1
[49dc2e85] Calculus v0.5.1
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.12
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[c04bee98] ExcelReaders v0.11.0
[f6369f11] ForwardDiff v0.10.7
[682c06a0] JSON v0.21.0
[2fda8390] LsqFit v0.8.1
[1914dd2f] MacroTools v0.5.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[87e2bd06] OptimBase v2.0.0
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[69de0a69] Parsers v0.3.10
[e409e4f3] PoissonRandom v0.4.0
[438e738f] PyCall v1.91.2
[1fd47b50] QuadGK v2.1.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[30578b45] URIParser v0.4.0
[81def892] VersionParsing v1.1.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package xlrd could not be found by pyimport. Usually this means
that you did not install xlrd in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the xlrd module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the xlrd module, you can use `pyimport_conda("xlrd", PKG)`,
where PKG is the Anaconda package the contains the module xlrd,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'xlrd'",)
Stacktrace:
[1] pyimport(::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /root/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /root/.julia/packages/ExcelReaders/PgE1r/src/ExcelReaders.jl:12
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:692
[6] _require_from_serialized(::String) at ./loading.jl:743
[7] _require(::Base.PkgId) at ./loading.jl:1034
[8] require(::Base.PkgId) at ./loading.jl:922
[9] require(::Module, ::Symbol) at ./loading.jl:917
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at none:6
during initialization of module ExcelReaders
in expression starting at /root/.julia/packages/Biomodelling/GiJJK/test/runtests.jl:1
ERROR: Package Biomodelling errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10