If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 3 minutes, 57 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed YAML ──────────────── v0.3.2
Installed Codecs ────────────── v0.5.0
Installed Libz ──────────────── v1.0.0
Installed IndexableBitVectors ─ v1.0.0
Installed BioCore ───────────── v2.0.5
Installed IntervalTrees ─────── v1.0.0
Installed BinaryProvider ────── v0.5.8
Installed BioTools ──────────── v1.0.0
Installed URIParser ─────────── v0.4.0
Installed Twiddle ───────────── v1.1.1
Installed Polynomials ───────── v0.6.0
Installed Compat ────────────── v2.2.0
Installed BioSymbols ────────── v3.1.0
Installed Automa ────────────── v0.8.0
Installed OrderedCollections ── v1.1.0
Installed Combinatorics ─────── v0.7.0
Installed RecipesBase ───────── v0.7.0
Installed BGZFStreams ───────── v0.3.0
Installed DataStructures ────── v0.17.6
Installed CodecZlib ─────────── v0.6.0
Installed TranscodingStreams ── v0.9.5
Installed FixedPointNumbers ─── v0.5.3
Installed BioAlignments ─────── v1.0.0
Installed EzXML ─────────────── v0.9.5
Installed ColorTypes ────────── v0.8.0
Installed BioSequences ──────── v1.1.0
Installed GenomicFeatures ───── v1.0.0
Installed BufferedStreams ───── v1.0.0
Updating `~/.julia/environments/v1.2/Project.toml`
[fa51a905] + BioTools v1.0.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[8f5d6c58] + EzXML v0.9.5
[53c48c17] + FixedPointNumbers v0.5.3
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[2ec943e9] + Libz v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Testing BioTools
Resolving package versions...
Status `/tmp/jl_buzUOk/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[8f5d6c58] EzXML v0.9.5
[53c48c17] FixedPointNumbers v0.5.3
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[2ec943e9] Libz v1.0.0
[bac558e1] OrderedCollections v1.1.0
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:30
Test threw exception
Expression: typeof(blastn(na1, na2)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_UzzCmu -subject /tmp/jl_QZ7N8l -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #open#535(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:658
[6] open at ./process.jl:649 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:629
[8] read(::Cmd) at ./process.jl:698
[9] read(::Cmd, ::Type{String}) at ./process.jl:709
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:89 [inlined]
[15] blastn(::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:88
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:30
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:31
Test threw exception
Expression: typeof(blastn(na1, [na1, na2])) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_OHH6IA -subject /tmp/jl_Kr1zjP -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #open#535(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:658
[6] open at ./process.jl:649 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:629
[8] read(::Cmd) at ./process.jl:698
[9] read(::Cmd, ::Type{String}) at ./process.jl:709
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:94 [inlined]
[15] blastn(::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:93
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:31
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:32
Test threw exception
Expression: typeof(blastn([na1, na2], [na1, na2])) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_ewTsp4 -subject /tmp/jl_849ovj -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #open#535(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:658
[6] open at ./process.jl:649 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:629
[8] read(::Cmd) at ./process.jl:698
[9] read(::Cmd, ::Type{String}) at ./process.jl:709
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:108 [inlined]
[15] blastn(::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}, ::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:107
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:32
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:33
Test threw exception
Expression: typeof(blastn(na1, nucldb, db=true)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_EZv8jz -db /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/BLASTDB/f002 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #open#535(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:658
[6] open at ./process.jl:649 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:629
[8] read(::Cmd) at ./process.jl:698
[9] read(::Cmd, ::Type{String}) at ./process.jl:709
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:80 [inlined]
[13] #blastn at ./none:0 [inlined]
[14] #blastn#4(::Bool, ::typeof(BioTools.BLAST.blastn), ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::String, ::Array{Any,1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:100
[15] #blastn at ./none:0 [inlined] (repeats 2 times)
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:33
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:34
Test threw exception
Expression: typeof(blastn(na1, fna)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_uLXjNP -subject /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/FASTA/f002.fasta -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #open#535(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:658
[6] open at ./process.jl:649 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:629
[8] read(::Cmd) at ./process.jl:698
[9] read(::Cmd, ::Type{String}) at ./process.jl:709
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] #blastn#4(::Bool, ::typeof(BioTools.BLAST.blastn), ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::String, ::Array{Any,1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:102
[15] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:98 [inlined] (repeats 2 times)
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:34
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:35
Test threw exception
Expression: typeof(blastn(fna, nucldb, db=true)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/FASTA/f002.fasta -db /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/BLASTDB/f002 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:401
[2] #526 at ./process.jl:414 [inlined]
[3] setup_stdios(::getfield(Base, Symbol("##526#527")){Cmd}, ::Array{Any,1}) at ./process.jl:498
[4] _spawn at ./process.jl:413 [inlined]
[5] #open#535(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:658
[6] open at ./process.jl:649 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:629
[8] read(::Cmd) at ./process.jl:698
[9] read(::Cmd, ::Type{String}) at ./process.jl:709
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:80 [inlined]
[13] #blastn at ./none:0 [inlined] (repeats 2 times)
[14] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Test/src/Test.jl:1113
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
Test Summary: | Error Total
BLAST+ blastn | 6 6
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 6 errored, 0 broken.
in expression starting at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:13
ERROR: Package BioTools errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 3 minutes, 45 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed URIParser ─────────── v0.4.0
Installed YAML ──────────────── v0.3.2
Installed Compat ────────────── v2.2.0
Installed DataStructures ────── v0.17.6
Installed BioSymbols ────────── v3.1.0
Installed BinaryProvider ────── v0.5.8
Installed BioTools ──────────── v1.0.0
Installed GenomicFeatures ───── v1.0.0
Installed Combinatorics ─────── v0.7.0
Installed Libz ──────────────── v1.0.0
Installed IndexableBitVectors ─ v1.0.0
Installed FixedPointNumbers ─── v0.5.3
Installed BGZFStreams ───────── v0.3.0
Installed OrderedCollections ── v1.1.0
Installed ColorTypes ────────── v0.8.0
Installed BioSequences ──────── v1.1.0
Installed RecipesBase ───────── v0.7.0
Installed Codecs ────────────── v0.5.0
Installed Polynomials ───────── v0.6.0
Installed IntervalTrees ─────── v1.0.0
Installed EzXML ─────────────── v0.9.5
Installed Automa ────────────── v0.8.0
Installed CodecZlib ─────────── v0.6.0
Installed BioAlignments ─────── v1.0.0
Installed TranscodingStreams ── v0.9.5
Installed BioCore ───────────── v2.0.5
Installed BufferedStreams ───── v1.0.0
Installed Twiddle ───────────── v1.1.1
Updating `~/.julia/environments/v1.3/Project.toml`
[fa51a905] + BioTools v1.0.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[8f5d6c58] + EzXML v0.9.5
[53c48c17] + FixedPointNumbers v0.5.3
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[2ec943e9] + Libz v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing BioTools
Resolving package versions...
Status `/tmp/jl_t4w6ui/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[8f5d6c58] EzXML v0.9.5
[53c48c17] FixedPointNumbers v0.5.3
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[2ec943e9] Libz v1.0.0
[bac558e1] OrderedCollections v1.1.0
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:30
Test threw exception
Expression: typeof(blastn(na1, na2)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_BfPacT -subject /tmp/jl_T3d5ha -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:89 [inlined]
[15] blastn(::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:88
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:30
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:31
Test threw exception
Expression: typeof(blastn(na1, [na1, na2])) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_Ts5NWC -subject /tmp/jl_ZemzB5 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:94 [inlined]
[15] blastn(::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:93
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:31
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:32
Test threw exception
Expression: typeof(blastn([na1, na2], [na1, na2])) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_lTDGDy -subject /tmp/jl_H9KQF1 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:108 [inlined]
[15] blastn(::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}, ::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:107
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:32
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:33
Test threw exception
Expression: typeof(blastn(na1, nucldb, db=true)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_TEMM9u -db /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/BLASTDB/f002 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:80 [inlined]
[13] #blastn at ./none:0 [inlined]
[14] #blastn#4(::Bool, ::typeof(BioTools.BLAST.blastn), ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::String, ::Array{Any,1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:100
[15] #blastn at ./none:0 [inlined] (repeats 2 times)
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:33
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:34
Test threw exception
Expression: typeof(blastn(na1, fna)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_nsop7Y -subject /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/FASTA/f002.fasta -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] #blastn#4(::Bool, ::typeof(BioTools.BLAST.blastn), ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::String, ::Array{Any,1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:102
[15] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:98 [inlined] (repeats 2 times)
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:34
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:35
Test threw exception
Expression: typeof(blastn(fna, nucldb, db=true)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/FASTA/f002.fasta -db /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/BLASTDB/f002 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:80 [inlined]
[13] #blastn at ./none:0 [inlined] (repeats 2 times)
[14] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:35
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
Test Summary: | Error Total
BLAST+ blastn | 6 6
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 6 errored, 0 broken.
in expression starting at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:13
ERROR: Package BioTools errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : package has test failures.
Last evaluation was ago and took 3 minutes, 50 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed ColorTypes ────────── v0.8.0
Installed Compat ────────────── v2.2.0
Installed BioCore ───────────── v2.0.5
Installed Polynomials ───────── v0.6.0
Installed DataStructures ────── v0.17.6
Installed Automa ────────────── v0.8.0
Installed IntervalTrees ─────── v1.0.0
Installed BioTools ──────────── v1.0.0
Installed FixedPointNumbers ─── v0.5.3
Installed BioSymbols ────────── v3.1.0
Installed URIParser ─────────── v0.4.0
Installed BufferedStreams ───── v1.0.0
Installed BioAlignments ─────── v1.0.0
Installed Libz ──────────────── v1.0.0
Installed YAML ──────────────── v0.3.2
Installed CodecZlib ─────────── v0.6.0
Installed BinaryProvider ────── v0.5.8
Installed TranscodingStreams ── v0.9.5
Installed EzXML ─────────────── v0.9.5
Installed Codecs ────────────── v0.5.0
Installed Combinatorics ─────── v0.7.0
Installed GenomicFeatures ───── v1.0.0
Installed OrderedCollections ── v1.1.0
Installed RecipesBase ───────── v0.7.0
Installed BGZFStreams ───────── v0.3.0
Installed Twiddle ───────────── v1.1.1
Installed IndexableBitVectors ─ v1.0.0
Installed BioSequences ──────── v1.1.0
Updating `~/.julia/environments/v1.3/Project.toml`
[fa51a905] + BioTools v1.0.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[8f5d6c58] + EzXML v0.9.5
[53c48c17] + FixedPointNumbers v0.5.3
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[2ec943e9] + Libz v1.0.0
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Testing BioTools
Resolving package versions...
Status `/tmp/jl_a8UdjA/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.6
[8f5d6c58] EzXML v0.9.5
[53c48c17] FixedPointNumbers v0.5.3
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[2ec943e9] Libz v1.0.0
[bac558e1] OrderedCollections v1.1.0
[f27b6e38] Polynomials v0.6.0
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:30
Test threw exception
Expression: typeof(blastn(na1, na2)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_KXy6kk -subject /tmp/jl_sS5h7s -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:89 [inlined]
[15] blastn(::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:88
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:30
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:31
Test threw exception
Expression: typeof(blastn(na1, [na1, na2])) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_COlVhQ -subject /tmp/jl_SamAsd -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:94 [inlined]
[15] blastn(::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:93
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:31
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:32
Test threw exception
Expression: typeof(blastn([na1, na2], [na1, na2])) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_OnEXRA -subject /tmp/jl_KqCmhY -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:108 [inlined]
[15] blastn(::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}, ::Array{BioSequences.BioSequence{BioSequences.DNAAlphabet{4}},1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:107
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:32
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:33
Test threw exception
Expression: typeof(blastn(na1, nucldb, db=true)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_8SN33l -db /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/BLASTDB/f002 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:80 [inlined]
[13] #blastn at ./none:0 [inlined]
[14] #blastn#4(::Bool, ::typeof(BioTools.BLAST.blastn), ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::String, ::Array{Any,1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:100
[15] #blastn at ./none:0 [inlined] (repeats 2 times)
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:33
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:34
Test threw exception
Expression: typeof(blastn(na1, fna)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /tmp/jl_WKIh9J -subject /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/FASTA/f002.fasta -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:82 [inlined]
[13] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:79 [inlined]
[14] #blastn#4(::Bool, ::typeof(BioTools.BLAST.blastn), ::BioSequences.BioSequence{BioSequences.DNAAlphabet{4}}, ::String, ::Array{Any,1}) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:102
[15] blastn at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:98 [inlined] (repeats 2 times)
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:34
[17] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[18] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
BLAST+ blastn: Error During Test at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:35
Test threw exception
Expression: typeof(blastn(fna, nucldb, db=true)) == Array{BLASTResult, 1}
IOError: could not spawn `blastn -query /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/FASTA/f002.fasta -db /root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens/BLASTDB/f002 -outfmt 5`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(::String, ::Cmd, ::Array{Any,1}) at ./process.jl:99
[2] #554 at ./process.jl:112 [inlined]
[3] setup_stdios(::Base.var"#554#555"{Cmd}, ::Array{Any,1}) at ./process.jl:196
[4] _spawn at ./process.jl:111 [inlined]
[5] #open#563(::Bool, ::Bool, ::typeof(open), ::Cmd, ::Base.DevNull) at ./process.jl:370
[6] open at ./process.jl:361 [inlined]
[7] open(::Cmd, ::String, ::Base.DevNull) at ./process.jl:341
[8] read(::Cmd) at ./process.jl:410
[9] read(::Cmd, ::Type{String}) at ./process.jl:421
[10] #readblastXML#2(::String, ::typeof(BioTools.BLAST.readblastXML), ::Cmd) at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67
[11] readblastXML at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:67 [inlined]
[12] #blastn#3 at /root/.julia/packages/BioTools/wXGId/src/blast/blastcommandline.jl:80 [inlined]
[13] #blastn at ./none:0 [inlined] (repeats 2 times)
[14] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:35
[15] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[16] top-level scope at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:16
Test Summary: | Error Total
BLAST+ blastn | 6 6
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 6 errored, 0 broken.
in expression starting at /root/.julia/packages/BioTools/wXGId/test/runtests.jl:13
ERROR: Package BioTools errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10