If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was successful .
Last evaluation was ago and took 5 minutes, 22 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Missings ──────────────────── v0.4.3
Installed Inflate ───────────────────── v0.1.1
Installed YAML ──────────────────────── v0.3.2
Installed TableTraits ───────────────── v1.0.0
Installed BioStructures ─────────────── v0.7.0
Installed IntervalTrees ─────────────── v1.0.0
Installed DataFrames ────────────────── v0.19.4
Installed Codecs ────────────────────── v0.5.0
Installed JLD2 ──────────────────────── v0.1.9
Installed BioCore ───────────────────── v2.0.5
Installed URIParser ─────────────────── v0.4.0
Installed BinaryProvider ────────────── v0.5.8
Installed Polynomials ───────────────── v0.6.0
Installed IndexableBitVectors ───────── v1.0.0
Installed Libz ──────────────────────── v1.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed Twiddle ───────────────────── v1.1.1
Installed Reexport ──────────────────── v0.2.0
Installed Format ────────────────────── v1.0.1
Installed InvertedIndices ───────────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed Tables ────────────────────── v0.2.11
Installed OrderedCollections ────────── v1.1.0
Installed MetaGraphs ────────────────── v0.6.4
Installed BGZFStreams ───────────────── v0.3.0
Installed RecipesBase ───────────────── v0.7.0
Installed BioSymbols ────────────────── v3.1.0
Installed Automa ────────────────────── v0.8.0
Installed Combinatorics ─────────────── v0.7.0
Installed Parsers ───────────────────── v0.3.10
Installed TranscodingStreams ────────── v0.9.5
Installed LightGraphs ───────────────── v1.3.0
Installed DataStructures ────────────── v0.17.6
Installed FixedPointNumbers ─────────── v0.5.3
Installed CodecZlib ─────────────────── v0.6.0
Installed JSON ──────────────────────── v0.21.0
Installed StaticArrays ──────────────── v0.12.1
Installed SimpleTraits ──────────────── v0.9.1
Installed GenomicFeatures ───────────── v1.0.0
Installed BioSequences ──────────────── v1.1.0
Installed CategoricalArrays ─────────── v0.7.3
Installed BioAlignments ─────────────── v1.0.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed BufferedStreams ───────────── v1.0.0
Installed MacroTools ────────────────── v0.5.2
Installed SortingAlgorithms ─────────── v0.3.1
Installed ArnoldiMethod ─────────────── v0.0.4
Installed ColorTypes ────────────────── v0.8.0
Installed FileIO ────────────────────── v1.1.0
Updating `~/.julia/environments/v1.2/Project.toml`
[de9282ab] + BioStructures v0.7.0
Updating `~/.julia/environments/v1.2/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[de9282ab] + BioStructures v0.7.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[324d7699] + CategoricalArrays v0.7.3
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[5789e2e9] + FileIO v1.1.0
[53c48c17] + FixedPointNumbers v0.5.3
[1fa38f19] + Format v1.0.1
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[d25df0c9] + Inflate v0.1.1
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.9
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.0
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.2
[626554b9] + MetaGraphs v0.6.4
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing BioStructures
Resolving package versions...
Status `/tmp/jl_FsEUq0/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[de9282ab] BioStructures v0.7.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[324d7699] CategoricalArrays v0.7.3
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[5789e2e9] FileIO v1.1.0
[53c48c17] FixedPointNumbers v0.5.3
[1fa38f19] Format v1.0.1
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[d25df0c9] Inflate v0.1.1
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.1.9
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.0
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[626554b9] MetaGraphs v0.6.4
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
[ Info: Skipping download tests on Linux due to timeouts during CI; change skip_linux_download to run these tests
Test Summary: |
PDB handling | No tests
Test Summary: | Pass Total
Model | 304 304
Test Summary: | Pass Total
Parsing | 385 385
Test Summary: | Pass Total
Writing | 103 103
Test Summary: | Pass Total
mmCIF | 1461 1461
Test Summary: | Pass Total
Spatial | 92 92
Testing BioStructures tests passed
Results with Julia v1.3.0
Testing was successful .
Last evaluation was ago and took 6 minutes, 57 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed URIParser ─────────────────── v0.4.0
Installed Format ────────────────────── v1.0.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed MetaGraphs ────────────────── v0.6.4
Installed BioStructures ─────────────── v0.7.0
Installed BioSymbols ────────────────── v3.1.0
Installed DataStructures ────────────── v0.17.6
Installed GenomicFeatures ───────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed CategoricalArrays ─────────── v0.7.3
Installed InvertedIndices ───────────── v1.0.0
Installed YAML ──────────────────────── v0.3.2
Installed StaticArrays ──────────────── v0.12.1
Installed Compat ────────────────────── v2.2.0
Installed JLD2 ──────────────────────── v0.1.9
Installed FileIO ────────────────────── v1.1.0
Installed Parsers ───────────────────── v0.3.10
Installed Libz ──────────────────────── v1.0.0
Installed MacroTools ────────────────── v0.5.2
Installed Missings ──────────────────── v0.4.3
Installed TableTraits ───────────────── v1.0.0
Installed Combinatorics ─────────────── v0.7.0
Installed OrderedCollections ────────── v1.1.0
Installed IndexableBitVectors ───────── v1.0.0
Installed FixedPointNumbers ─────────── v0.5.3
Installed JSON ──────────────────────── v0.21.0
Installed BGZFStreams ───────────────── v0.3.0
Installed BioSequences ──────────────── v1.1.0
Installed RecipesBase ───────────────── v0.7.0
Installed DataAPI ───────────────────── v1.1.0
Installed ColorTypes ────────────────── v0.8.0
Installed LightGraphs ───────────────── v1.3.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Codecs ────────────────────── v0.5.0
Installed Automa ────────────────────── v0.8.0
Installed Tables ────────────────────── v0.2.11
Installed IntervalTrees ─────────────── v1.0.0
Installed Polynomials ───────────────── v0.6.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed BioAlignments ─────────────── v1.0.0
Installed Inflate ───────────────────── v0.1.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CodecZlib ─────────────────── v0.6.0
Installed SimpleTraits ──────────────── v0.9.1
Installed PooledArrays ──────────────── v0.5.2
Installed Twiddle ───────────────────── v1.1.1
Installed TranscodingStreams ────────── v0.9.5
Installed DataFrames ────────────────── v0.19.4
Installed BioCore ───────────────────── v2.0.5
Installed BufferedStreams ───────────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Updating `~/.julia/environments/v1.3/Project.toml`
[de9282ab] + BioStructures v0.7.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[de9282ab] + BioStructures v0.7.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[324d7699] + CategoricalArrays v0.7.3
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[5789e2e9] + FileIO v1.1.0
[53c48c17] + FixedPointNumbers v0.5.3
[1fa38f19] + Format v1.0.1
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[d25df0c9] + Inflate v0.1.1
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.9
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.0
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.2
[626554b9] + MetaGraphs v0.6.4
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing BioStructures
Resolving package versions...
Status `/tmp/jl_X44HAT/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[de9282ab] BioStructures v0.7.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[324d7699] CategoricalArrays v0.7.3
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[5789e2e9] FileIO v1.1.0
[53c48c17] FixedPointNumbers v0.5.3
[1fa38f19] Format v1.0.1
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[d25df0c9] Inflate v0.1.1
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.1.9
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.0
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[626554b9] MetaGraphs v0.6.4
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
[ Info: Skipping download tests on Linux due to timeouts during CI; change skip_linux_download to run these tests
Test Summary: |
PDB handling | No tests
Test Summary: | Pass Total
Model | 304 304
Test Summary: | Pass Total
Parsing | 385 385
Test Summary: | Pass Total
Writing | 103 103
Test Summary: | Pass Total
mmCIF | 1461 1461
Test Summary: | Pass Total
Spatial | 92 92
Testing BioStructures tests passed
Results with Julia v1.3.1-pre-7704df0a5a
Testing was successful .
Last evaluation was ago and took 6 minutes, 47 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Format ────────────────────── v1.0.1
Installed ColorTypes ────────────────── v0.8.0
Installed MetaGraphs ────────────────── v0.6.4
Installed BioStructures ─────────────── v0.7.0
Installed BioCore ───────────────────── v2.0.5
Installed DataStructures ────────────── v0.17.6
Installed Automa ────────────────────── v0.8.0
Installed LightGraphs ───────────────── v1.3.0
Installed Tables ────────────────────── v0.2.11
Installed FixedPointNumbers ─────────── v0.5.3
Installed MacroTools ────────────────── v0.5.2
Installed Compat ────────────────────── v2.2.0
Installed Polynomials ───────────────── v0.6.0
Installed StaticArrays ──────────────── v0.12.1
Installed IntervalTrees ─────────────── v1.0.0
Installed DataFrames ────────────────── v0.19.4
Installed Inflate ───────────────────── v0.1.1
Installed BufferedStreams ───────────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed Libz ──────────────────────── v1.0.0
Installed FileIO ────────────────────── v1.1.0
Installed CodecZlib ─────────────────── v0.6.0
Installed BioSymbols ────────────────── v3.1.0
Installed BioAlignments ─────────────── v1.0.0
Installed TableTraits ───────────────── v1.0.0
Installed YAML ──────────────────────── v0.3.2
Installed PooledArrays ──────────────── v0.5.2
Installed Missings ──────────────────── v0.4.3
Installed BinaryProvider ────────────── v0.5.8
Installed InvertedIndices ───────────── v1.0.0
Installed Twiddle ───────────────────── v1.1.1
Installed TranscodingStreams ────────── v0.9.5
Installed DataValueInterfaces ───────── v1.0.0
Installed SimpleTraits ──────────────── v0.9.1
Installed Codecs ────────────────────── v0.5.0
Installed Combinatorics ─────────────── v0.7.0
Installed GenomicFeatures ───────────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed RecipesBase ───────────────── v0.7.0
Installed CategoricalArrays ─────────── v0.7.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed JLD2 ──────────────────────── v0.1.9
Installed BioSequences ──────────────── v1.1.0
Installed Parsers ───────────────────── v0.3.10
Installed OrderedCollections ────────── v1.1.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed BGZFStreams ───────────────── v0.3.0
Installed IndexableBitVectors ───────── v1.0.0
Updating `~/.julia/environments/v1.3/Project.toml`
[de9282ab] + BioStructures v0.7.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[de9282ab] + BioStructures v0.7.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[324d7699] + CategoricalArrays v0.7.3
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.8.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[5789e2e9] + FileIO v1.1.0
[53c48c17] + FixedPointNumbers v0.5.3
[1fa38f19] + Format v1.0.1
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[d25df0c9] + Inflate v0.1.1
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.9
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.0
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.2
[626554b9] + MetaGraphs v0.6.4
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Testing BioStructures
Resolving package versions...
Status `/tmp/jl_5sijxR/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[00701ae9] BioAlignments v1.0.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[de9282ab] BioStructures v0.7.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[324d7699] CategoricalArrays v0.7.3
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.8.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[5789e2e9] FileIO v1.1.0
[53c48c17] FixedPointNumbers v0.5.3
[1fa38f19] Format v1.0.1
[899a7d2d] GenomicFeatures v1.0.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[d25df0c9] Inflate v0.1.1
[524e6230] IntervalTrees v1.0.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.1.9
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.0
[093fc24a] LightGraphs v1.3.0
[1914dd2f] MacroTools v0.5.2
[626554b9] MetaGraphs v0.6.4
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.2
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[9abbd945] Profile [`@stdlib/Profile`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Note: checking out 'v1.0.0-7-g1babfbc'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at 1babfbc Merge pull request #28 from tanhevg/bugfix/BioStructures#11
[ Info: Skipping download tests on Linux due to timeouts during CI; change skip_linux_download to run these tests
Test Summary: |
PDB handling | No tests
Test Summary: | Pass Total
Model | 304 304
Test Summary: | Pass Total
Parsing | 385 385
Test Summary: | Pass Total
Writing | 103 103
Test Summary: | Pass Total
mmCIF | 1461 1461
Test Summary: | Pass Total
Spatial | 92 92
Testing BioStructures tests passed