BioSequences

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If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.

Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 8 minutes, 36 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed RecipesBase ───────── v0.7.0
 Installed Combinatorics ─────── v0.7.0
 Installed YAML ──────────────── v0.3.2
 Installed Twiddle ───────────── v1.1.1
 Installed DataStructures ────── v0.17.6
 Installed BioSymbols ────────── v3.1.0
 Installed IntervalTrees ─────── v1.0.0
 Installed BioSequences ──────── v1.1.0
 Installed TranscodingStreams ── v0.9.5
 Installed Compat ────────────── v2.2.0
 Installed BufferedStreams ───── v1.0.0
 Installed OrderedCollections ── v1.1.0
 Installed IndexableBitVectors ─ v1.0.0
 Installed Automa ────────────── v0.8.0
 Installed Codecs ────────────── v0.5.0
 Installed BioCore ───────────── v2.0.5
 Installed Polynomials ───────── v0.6.0
  Updating `~/.julia/environments/v1.2/Project.toml`
  [7e6ae17a] + BioSequences v1.1.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [37cfa864] + BioCore v2.0.5
  [7e6ae17a] + BioSequences v1.1.0
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [19ecbf4d] + Codecs v0.5.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [864edb3b] + DataStructures v0.17.6
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.6.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.1
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Testing BioSequences
 Resolving package versions...
 Installed SortingAlgorithms ─ v0.3.1
 Installed Missings ────────── v0.4.3
 Installed DataAPI ─────────── v1.1.0
 Installed StatsBase ───────── v0.32.0
    Status `/tmp/jl_pqWIzl/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [37cfa864] BioCore v2.0.5
  [7e6ae17a] BioSequences v1.1.0
  [3c28c6f8] BioSymbols v3.1.0
  [e1450e63] BufferedStreams v1.0.0
  [19ecbf4d] Codecs v0.5.0
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.6
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [524e6230] IntervalTrees v1.0.0
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [f27b6e38] Polynomials v0.6.0
  [3cdcf5f2] RecipesBase v0.7.0
  [a2af1166] SortingAlgorithms v0.3.1
  [2913bbd2] StatsBase v0.32.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.1
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9abbd945] Profile  [`@stdlib/Profile`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Symbols       |  174    174
Test Summary: | Pass  Total
Sequences     |    6      6
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = ip:0x0
└ @ Core :-1
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = ip:0x0
└ @ Core :-1
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
Test Summary: |  Pass  Total
BioSequences  | 20908  20908
Test Summary:      | Pass  Total
ReferenceSequences | 3466   3466
Test Summary: | Pass  Total
Composition   |   72     72
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::getfield(Main.TestBioSequences, Symbol("#test_eachkmer#152")){getfield(Main.TestBioSequences, Symbol("#string_eachkmer#151"))})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:17
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:17
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::getfield(Main.TestBioSequences, Symbol("#test_eachkmer#152")){getfield(Main.TestBioSequences, Symbol("#string_eachkmer#151"))})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:17
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:17
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::getfield(Main.TestBioSequences, Symbol("#test_iteratorlength#155")){getfield(Main.TestBioSequences, Symbol("#string_eachkmer#151"))})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:25
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:25
Test Summary: | Pass  Total
Kmers         | 7572   7572
Test Summary: | Pass  Total
Search        |  227    227
Test Summary: | Pass  Total
Translation   |   15     15
Test Summary: | Pass  Total
Demultiplexer |  212    212
Cloning into '/root/.julia/packages/BioSequences/7i86L/test/BioFmtSpecimens'...
Test Summary:       | Pass  Total
Reading and Writing |  513    513
   Testing BioSequences tests passed

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 9 minutes, 22 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed RecipesBase ───────── v0.7.0
 Installed Combinatorics ─────── v0.7.0
 Installed Codecs ────────────── v0.5.0
 Installed IndexableBitVectors ─ v1.0.0
 Installed Polynomials ───────── v0.6.0
 Installed BioSymbols ────────── v3.1.0
 Installed Automa ────────────── v0.8.0
 Installed BioSequences ──────── v1.1.0
 Installed Compat ────────────── v2.2.0
 Installed TranscodingStreams ── v0.9.5
 Installed DataStructures ────── v0.17.6
 Installed YAML ──────────────── v0.3.2
 Installed Twiddle ───────────── v1.1.1
 Installed BioCore ───────────── v2.0.5
 Installed IntervalTrees ─────── v1.0.0
 Installed OrderedCollections ── v1.1.0
 Installed BufferedStreams ───── v1.0.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [7e6ae17a] + BioSequences v1.1.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [37cfa864] + BioCore v2.0.5
  [7e6ae17a] + BioSequences v1.1.0
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [19ecbf4d] + Codecs v0.5.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [864edb3b] + DataStructures v0.17.6
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.6.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.1
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Testing BioSequences
 Resolving package versions...
 Installed DataAPI ─────────── v1.1.0
 Installed StatsBase ───────── v0.32.0
 Installed Missings ────────── v0.4.3
 Installed SortingAlgorithms ─ v0.3.1
    Status `/tmp/jl_1FEVsk/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [37cfa864] BioCore v2.0.5
  [7e6ae17a] BioSequences v1.1.0
  [3c28c6f8] BioSymbols v3.1.0
  [e1450e63] BufferedStreams v1.0.0
  [19ecbf4d] Codecs v0.5.0
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.6
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [524e6230] IntervalTrees v1.0.0
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [f27b6e38] Polynomials v0.6.0
  [3cdcf5f2] RecipesBase v0.7.0
  [a2af1166] SortingAlgorithms v0.3.1
  [2913bbd2] StatsBase v0.32.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.1
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9abbd945] Profile  [`@stdlib/Profile`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Symbols       |  174    174
Test Summary: | Pass  Total
Sequences     |    6      6
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = ip:0x0
└ @ Core :-1
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = ip:0x0
└ @ Core :-1
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
Test Summary: |  Pass  Total
BioSequences  | 20908  20908
Test Summary:      | Pass  Total
ReferenceSequences | 3466   3466
Test Summary: | Pass  Total
Composition   |   72     72
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::Main.TestBioSequences.var"#test_eachkmer#152"{Main.TestBioSequences.var"#string_eachkmer#151"})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:17
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:17
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::Main.TestBioSequences.var"#test_eachkmer#152"{Main.TestBioSequences.var"#string_eachkmer#151"})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:17
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:17
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::Main.TestBioSequences.var"#test_iteratorlength#155"{Main.TestBioSequences.var"#string_eachkmer#151"})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:25
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:25
Test Summary: | Pass  Total
Kmers         | 7572   7572
Test Summary: | Pass  Total
Search        |  227    227
Test Summary: | Pass  Total
Translation   |   15     15
Test Summary: | Pass  Total
Demultiplexer |  212    212
Cloning into '/root/.julia/packages/BioSequences/7i86L/test/BioFmtSpecimens'...
Test Summary:       | Pass  Total
Reading and Writing |  513    513
   Testing BioSequences tests passed

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 9 minutes, 47 seconds.

Click here to download the log file. 

 Resolving package versions...
 Installed Combinatorics ─────── v0.7.0
 Installed RecipesBase ───────── v0.7.0
 Installed Compat ────────────── v2.2.0
 Installed TranscodingStreams ── v0.9.5
 Installed Twiddle ───────────── v1.1.1
 Installed BioSymbols ────────── v3.1.0
 Installed Automa ────────────── v0.8.0
 Installed BioSequences ──────── v1.1.0
 Installed Codecs ────────────── v0.5.0
 Installed DataStructures ────── v0.17.6
 Installed OrderedCollections ── v1.1.0
 Installed BufferedStreams ───── v1.0.0
 Installed IndexableBitVectors ─ v1.0.0
 Installed IntervalTrees ─────── v1.0.0
 Installed BioCore ───────────── v2.0.5
 Installed YAML ──────────────── v0.3.2
 Installed Polynomials ───────── v0.6.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [7e6ae17a] + BioSequences v1.1.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [37cfa864] + BioCore v2.0.5
  [7e6ae17a] + BioSequences v1.1.0
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [19ecbf4d] + Codecs v0.5.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [864edb3b] + DataStructures v0.17.6
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.6.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.1
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Testing BioSequences
 Resolving package versions...
 Installed Missings ────────── v0.4.3
 Installed DataAPI ─────────── v1.1.0
 Installed SortingAlgorithms ─ v0.3.1
 Installed StatsBase ───────── v0.32.0
    Status `/tmp/jl_LBixMj/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [37cfa864] BioCore v2.0.5
  [7e6ae17a] BioSequences v1.1.0
  [3c28c6f8] BioSymbols v3.1.0
  [e1450e63] BufferedStreams v1.0.0
  [19ecbf4d] Codecs v0.5.0
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [9a962f9c] DataAPI v1.1.0
  [864edb3b] DataStructures v0.17.6
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [524e6230] IntervalTrees v1.0.0
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [f27b6e38] Polynomials v0.6.0
  [3cdcf5f2] RecipesBase v0.7.0
  [a2af1166] SortingAlgorithms v0.3.1
  [2913bbd2] StatsBase v0.32.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.1
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9abbd945] Profile  [`@stdlib/Profile`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Symbols       |  174    174
Test Summary: | Pass  Total
Sequences     |    6      6
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = ip:0x0
└ @ Core :-1
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:92 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:92
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:78 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:78
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_nibbles is deprecated, use count_0000_nibbles instead
│   caller = bp_chunk_count at site_counting.jl:65 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:65
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = ip:0x0
└ @ Core :-1
┌ Warning: count_zero_bitpairs is deprecated, use count_00_bitpairs instead
│   caller = bp_chunk_count at site_counting.jl:96 [inlined]
└ @ Core ~/.julia/packages/BioSequences/7i86L/src/bioseq/site_counting/site_counting.jl:96
Test Summary: |  Pass  Total
BioSequences  | 20908  20908
Test Summary:      | Pass  Total
ReferenceSequences | 3466   3466
Test Summary: | Pass  Total
Composition   |   72     72
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::Main.TestBioSequences.var"#test_eachkmer#152"{Main.TestBioSequences.var"#string_eachkmer#151"})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:17
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:17
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::Main.TestBioSequences.var"#test_eachkmer#152"{Main.TestBioSequences.var"#string_eachkmer#151"})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:17
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:17
┌ Warning: eachkmer is depreceated: type instability means it is too slow. Please use each(::Type{Kmer{T,K}}, seq, step) instead
│   caller = (::Main.TestBioSequences.var"#test_iteratorlength#155"{Main.TestBioSequences.var"#string_eachkmer#151"})(::Type, ::String, ::Int64, ::Int64) at eachkmer.jl:25
└ @ Main.TestBioSequences ~/.julia/packages/BioSequences/7i86L/test/kmers/eachkmer.jl:25
Test Summary: | Pass  Total
Kmers         | 7572   7572
Test Summary: | Pass  Total
Search        |  227    227
Test Summary: | Pass  Total
Translation   |   15     15
Test Summary: | Pass  Total
Demultiplexer |  212    212
Cloning into '/root/.julia/packages/BioSequences/7i86L/test/BioFmtSpecimens'...
Test Summary:       | Pass  Total
Reading and Writing |  513    513
   Testing BioSequences tests passed