If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 5 minutes, 24 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed TableTraits ───────────────── v1.0.0
Installed MbedTLS ───────────────────── v0.7.0
Installed BinaryProvider ────────────── v0.5.8
Installed CSV ───────────────────────── v0.5.18
Installed DataFrames ────────────────── v0.19.4
Installed BioMedQuery ───────────────── v0.6.4
Installed URIParser ─────────────────── v0.4.0
Installed DataValueInterfaces ───────── v1.0.0
Installed InvertedIndices ───────────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed BioServices ───────────────── v0.3.2
Installed ArrayLayouts ──────────────── v0.1.5
Installed FTPClient ─────────────────── v1.0.1
Installed SQLite ────────────────────── v0.8.2
Installed Reexport ──────────────────── v0.2.0
Installed Tables ────────────────────── v0.2.11
Installed Compat ────────────────────── v2.2.0
Installed OrderedCollections ────────── v1.1.0
Installed IniFile ───────────────────── v0.5.0
Installed FilePathsBase ─────────────── v0.7.0
Installed IterTools ─────────────────── v1.3.0
Installed Parsers ───────────────────── v0.3.10
Installed DataStructures ────────────── v0.17.6
Installed WeakRefStrings ────────────── v0.6.1
Installed DataStreams ───────────────── v0.4.2
Installed JSON ──────────────────────── v0.21.0
Installed FillArrays ────────────────── v0.8.2
Installed DecFP ─────────────────────── v0.4.9
Installed XMLDict ───────────────────── v0.3.0
Installed StaticArrays ──────────────── v0.12.1
Installed HTTP ──────────────────────── v0.8.8
Installed ZipFile ───────────────────── v0.8.3
Installed AbstractTrees ─────────────── v0.2.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed LibCURL ───────────────────── v0.5.2
Installed CategoricalArrays ─────────── v0.7.3
Installed LightXML ──────────────────── v0.8.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed LazyArrays ────────────────── v0.14.10
Installed MacroTools ────────────────── v0.5.2
Installed BinDeps ───────────────────── v0.8.10
Installed SpecialFunctions ──────────── v0.8.0
Installed MySQL ─────────────────────── v0.7.1
Installed EzXML ─────────────────────── v0.9.5
Installed Gumbo ─────────────────────── v0.5.1
Updating `~/.julia/environments/v1.2/Project.toml`
[e96904bf] + BioMedQuery v0.6.4
Updating `~/.julia/environments/v1.2/Manifest.toml`
[1520ce14] + AbstractTrees v0.2.1
[4c555306] + ArrayLayouts v0.1.5
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[e96904bf] + BioMedQuery v0.6.4
[a0d4ced5] + BioServices v0.3.2
[336ed68f] + CSV v0.5.18
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[9a8bc11e] + DataStreams v0.4.2
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[55939f99] + DecFP v0.4.9
[8f5d6c58] + EzXML v0.9.5
[01fcc997] + FTPClient v1.0.1
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[708ec375] + Gumbo v0.5.1
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5078a376] + LazyArrays v0.14.10
[b27032c2] + LibCURL v0.5.2
[9c8b4983] + LightXML v0.8.1
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[39abe10b] + MySQL v0.7.1
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[189a3867] + Reexport v0.2.0
[0aa819cd] + SQLite v0.8.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[228000da] + XMLDict v0.3.0
[a5390f91] + ZipFile v0.8.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS ─────────→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building SQLite ──────────→ `~/.julia/packages/SQLite/msdQN/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building DecFP ───────────→ `~/.julia/packages/DecFP/U0m7y/deps/build.log`
Building LibCURL ─────────→ `~/.julia/packages/LibCURL/lWJxD/deps/build.log`
Building ZipFile ─────────→ `~/.julia/packages/ZipFile/oD4uG/deps/build.log`
Building LightXML ────────→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Building MySQL ───────────→ `~/.julia/packages/MySQL/R2gKS/deps/build.log`
Building EzXML ───────────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Building Gumbo ───────────→ `~/.julia/packages/Gumbo/G7Qbw/deps/build.log`
Testing BioMedQuery
Resolving package versions...
Status `/tmp/jl_d85GZq/Manifest.toml`
[1520ce14] AbstractTrees v0.2.1
[4c555306] ArrayLayouts v0.1.5
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[e96904bf] BioMedQuery v0.6.4
[a0d4ced5] BioServices v0.3.2
[336ed68f] CSV v0.5.18
[324d7699] CategoricalArrays v0.7.3
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[9a8bc11e] DataStreams v0.4.2
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[55939f99] DecFP v0.4.9
[8f5d6c58] EzXML v0.9.5
[01fcc997] FTPClient v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[708ec375] Gumbo v0.5.1
[cd3eb016] HTTP v0.8.8
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5078a376] LazyArrays v0.14.10
[b27032c2] LibCURL v0.5.2
[9c8b4983] LightXML v0.8.1
[1914dd2f] MacroTools v0.5.2
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[39abe10b] MySQL v0.7.1
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[189a3867] Reexport v0.2.0
[0aa819cd] SQLite v0.8.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.1
[228000da] XMLDict v0.3.0
[a5390f91] ZipFile v0.8.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
CI = true, TRAVIS = false
┌ Warning: MySQL tests not running
└ @ Main ~/.julia/packages/BioMedQuery/K4kwC/test/runtests.jl:24
Running tests:
-----------------------------------------
-----------------------------------------
Testing: DBUtils SQLite
-----------------------------------------
-----------------------------------------
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = select_all_tables(::SQLite.DB) at sqlite_db_utils.jl:19
└ @ BioMedQuery.DBUtils ~/.julia/packages/BioMedQuery/K4kwC/src/DBUtils/sqlite_db_utils.jl:19
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = insert_row!(::SQLite.DB, ::String, ::Dict{Symbol,Any}, ::Bool) at sqlite_db_utils.jl:59
└ @ BioMedQuery.DBUtils ~/.julia/packages/BioMedQuery/K4kwC/src/DBUtils/sqlite_db_utils.jl:59
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at dbutils_sqlite.jl:20
└ @ Core ~/.julia/packages/BioMedQuery/K4kwC/test/dbutils_sqlite.jl:20
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at dbutils_sqlite.jl:21
└ @ Core ~/.julia/packages/BioMedQuery/K4kwC/test/dbutils_sqlite.jl:21
Test Summary: | Pass Total
SQLite DBUtils | 3 3
-----------------------------------------
-----------------------------------------
Testing: Eutils/PubMed
-----------------------------------------
-----------------------------------------
-----------------------------------------
Testing ESearch/EFetch for PubMed
/opt/julia/bin/julia: symbol lookup error: /root/.julia/packages/MbedTLS/a1JFn/deps/usr/lib/libmbedtls.so: undefined symbol: mbedtls_x509_crt_verify_restartable
ERROR: Package BioMedQuery errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Operations.jl:1288
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:245
[5] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:233 [inlined]
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:230 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/API.jl:228
[12] top-level scope at none:10
Results with Julia v1.3.0
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 6 minutes, 20 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed URIParser ─────────────────── v0.4.0
Installed IniFile ───────────────────── v0.5.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed DataStructures ────────────── v0.17.6
Installed StaticArrays ──────────────── v0.12.1
Installed LazyArrays ────────────────── v0.14.10
Installed CSV ───────────────────────── v0.5.18
Installed BioMedQuery ───────────────── v0.6.4
Installed Compat ────────────────────── v2.2.0
Installed CategoricalArrays ─────────── v0.7.3
Installed InvertedIndices ───────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed BinaryProvider ────────────── v0.5.8
Installed ZipFile ───────────────────── v0.8.3
Installed DecFP ─────────────────────── v0.4.8
Installed IterTools ─────────────────── v1.3.0
Installed Missings ──────────────────── v0.4.3
Installed SpecialFunctions ──────────── v0.9.0
Installed TableTraits ───────────────── v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed MacroTools ────────────────── v0.5.2
Installed JSON ──────────────────────── v0.21.0
Installed FTPClient ─────────────────── v1.0.1
Installed ArrayLayouts ──────────────── v0.1.5
Installed DataAPI ───────────────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed EzXML ─────────────────────── v0.9.5
Installed AbstractTrees ─────────────── v0.2.1
Installed MySQL ─────────────────────── v0.7.1
Installed DataValueInterfaces ───────── v1.0.0
Installed MbedTLS ───────────────────── v0.7.0
Installed XMLDict ───────────────────── v0.3.0
Installed FilePathsBase ─────────────── v0.7.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed HTTP ──────────────────────── v0.8.8
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DataStreams ───────────────── v0.4.2
Installed PooledArrays ──────────────── v0.5.2
Installed BioServices ───────────────── v0.3.2
Installed WeakRefStrings ────────────── v0.6.1
Installed FillArrays ────────────────── v0.8.2
Installed LightXML ──────────────────── v0.8.1
Installed DataFrames ────────────────── v0.19.4
Installed SQLite ────────────────────── v0.8.2
Installed Reexport ──────────────────── v0.2.0
Installed Gumbo ─────────────────────── v0.5.1
Installed LibCURL ───────────────────── v0.5.2
Updating `~/.julia/environments/v1.3/Project.toml`
[e96904bf] + BioMedQuery v0.6.4
Updating `~/.julia/environments/v1.3/Manifest.toml`
[1520ce14] + AbstractTrees v0.2.1
[4c555306] + ArrayLayouts v0.1.5
[b99e7846] + BinaryProvider v0.5.8
[e96904bf] + BioMedQuery v0.6.4
[a0d4ced5] + BioServices v0.3.2
[336ed68f] + CSV v0.5.18
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[9a8bc11e] + DataStreams v0.4.2
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[55939f99] + DecFP v0.4.8
[8f5d6c58] + EzXML v0.9.5
[01fcc997] + FTPClient v1.0.1
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[708ec375] + Gumbo v0.5.1
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5078a376] + LazyArrays v0.14.10
[b27032c2] + LibCURL v0.5.2
[9c8b4983] + LightXML v0.8.1
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[39abe10b] + MySQL v0.7.1
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[189a3867] + Reexport v0.2.0
[0aa819cd] + SQLite v0.8.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[228000da] + XMLDict v0.3.0
[a5390f91] + ZipFile v0.8.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building DecFP ───→ `~/.julia/packages/DecFP/3jJW7/deps/build.log`
Building ZipFile ─→ `~/.julia/packages/ZipFile/oD4uG/deps/build.log`
Building EzXML ───→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Building MySQL ───→ `~/.julia/packages/MySQL/R2gKS/deps/build.log`
Building MbedTLS ─→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building SQLite ──→ `~/.julia/packages/SQLite/msdQN/deps/build.log`
Building LightXML → `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Building Gumbo ───→ `~/.julia/packages/Gumbo/G7Qbw/deps/build.log`
Building LibCURL ─→ `~/.julia/packages/LibCURL/lWJxD/deps/build.log`
Testing BioMedQuery
Resolving package versions...
Status `/tmp/jl_hzb4LG/Manifest.toml`
[1520ce14] AbstractTrees v0.2.1
[4c555306] ArrayLayouts v0.1.5
[b99e7846] BinaryProvider v0.5.8
[e96904bf] BioMedQuery v0.6.4
[a0d4ced5] BioServices v0.3.2
[336ed68f] CSV v0.5.18
[324d7699] CategoricalArrays v0.7.3
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[9a8bc11e] DataStreams v0.4.2
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[55939f99] DecFP v0.4.8
[8f5d6c58] EzXML v0.9.5
[01fcc997] FTPClient v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[708ec375] Gumbo v0.5.1
[cd3eb016] HTTP v0.8.8
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5078a376] LazyArrays v0.14.10
[b27032c2] LibCURL v0.5.2
[9c8b4983] LightXML v0.8.1
[1914dd2f] MacroTools v0.5.2
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[39abe10b] MySQL v0.7.1
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[189a3867] Reexport v0.2.0
[0aa819cd] SQLite v0.8.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.1
[228000da] XMLDict v0.3.0
[a5390f91] ZipFile v0.8.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
CI = true, TRAVIS = false
┌ Warning: MySQL tests not running
└ @ Main ~/.julia/packages/BioMedQuery/K4kwC/test/runtests.jl:24
Running tests:
-----------------------------------------
-----------------------------------------
Testing: DBUtils SQLite
-----------------------------------------
-----------------------------------------
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = select_all_tables(::SQLite.DB) at sqlite_db_utils.jl:19
└ @ BioMedQuery.DBUtils ~/.julia/packages/BioMedQuery/K4kwC/src/DBUtils/sqlite_db_utils.jl:19
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = insert_row!(::SQLite.DB, ::String, ::Dict{Symbol,Any}, ::Bool) at sqlite_db_utils.jl:59
└ @ BioMedQuery.DBUtils ~/.julia/packages/BioMedQuery/K4kwC/src/DBUtils/sqlite_db_utils.jl:59
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at dbutils_sqlite.jl:20
└ @ Core ~/.julia/packages/BioMedQuery/K4kwC/test/dbutils_sqlite.jl:20
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at dbutils_sqlite.jl:21
└ @ Core ~/.julia/packages/BioMedQuery/K4kwC/test/dbutils_sqlite.jl:21
Test Summary: | Pass Total
SQLite DBUtils | 3 3
-----------------------------------------
-----------------------------------------
Testing: Eutils/PubMed
-----------------------------------------
-----------------------------------------
-----------------------------------------
Testing ESearch/EFetch for PubMed
/opt/julia/bin/julia: symbol lookup error: /root/.julia/packages/MbedTLS/a1JFn/deps/usr/lib/libmbedtls.so: undefined symbol: mbedtls_x509_crt_verify_restartable
ERROR: Package BioMedQuery errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10
Results with Julia v1.3.1-pre-7704df0a5a
Testing was unsuccessful : testing failed for unknown reasons.
Last evaluation was ago and took 5 minutes, 39 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed WeakRefStrings ────────────── v0.6.1
Installed ArrayLayouts ──────────────── v0.1.5
Installed Tables ────────────────────── v0.2.11
Installed MbedTLS ───────────────────── v0.7.0
Installed DataStructures ────────────── v0.17.6
Installed AbstractTrees ─────────────── v0.2.1
Installed BioMedQuery ───────────────── v0.6.4
Installed SpecialFunctions ──────────── v0.9.0
Installed SQLite ────────────────────── v0.8.2
Installed Compat ────────────────────── v2.2.0
Installed MySQL ─────────────────────── v0.7.1
Installed StaticArrays ──────────────── v0.12.1
Installed LazyArrays ────────────────── v0.14.10
Installed DataFrames ────────────────── v0.19.4
Installed Gumbo ─────────────────────── v0.5.1
Installed IterTools ─────────────────── v1.3.0
Installed DecFP ─────────────────────── v0.4.8
Installed URIParser ─────────────────── v0.4.0
Installed MacroTools ────────────────── v0.5.2
Installed Missings ──────────────────── v0.4.3
Installed HTTP ──────────────────────── v0.8.8
Installed TableTraits ───────────────── v1.0.0
Installed FillArrays ────────────────── v0.8.2
Installed PooledArrays ──────────────── v0.5.2
Installed InvertedIndices ───────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed FilePathsBase ─────────────── v0.7.0
Installed EzXML ─────────────────────── v0.9.5
Installed ZipFile ───────────────────── v0.8.3
Installed LightXML ──────────────────── v0.8.1
Installed IniFile ───────────────────── v0.5.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed DataStreams ───────────────── v0.4.2
Installed BioServices ───────────────── v0.3.2
Installed XMLDict ───────────────────── v0.3.0
Installed DataAPI ───────────────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed FTPClient ─────────────────── v1.0.1
Installed OrderedCollections ────────── v1.1.0
Installed CategoricalArrays ─────────── v0.7.3
Installed CSV ───────────────────────── v0.5.18
Installed JSON ──────────────────────── v0.21.0
Installed Parsers ───────────────────── v0.3.10
Installed SortingAlgorithms ─────────── v0.3.1
Installed LibCURL ───────────────────── v0.5.2
Updating `~/.julia/environments/v1.3/Project.toml`
[e96904bf] + BioMedQuery v0.6.4
Updating `~/.julia/environments/v1.3/Manifest.toml`
[1520ce14] + AbstractTrees v0.2.1
[4c555306] + ArrayLayouts v0.1.5
[b99e7846] + BinaryProvider v0.5.8
[e96904bf] + BioMedQuery v0.6.4
[a0d4ced5] + BioServices v0.3.2
[336ed68f] + CSV v0.5.18
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[9a8bc11e] + DataStreams v0.4.2
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[55939f99] + DecFP v0.4.8
[8f5d6c58] + EzXML v0.9.5
[01fcc997] + FTPClient v1.0.1
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[708ec375] + Gumbo v0.5.1
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5078a376] + LazyArrays v0.14.10
[b27032c2] + LibCURL v0.5.2
[9c8b4983] + LightXML v0.8.1
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[39abe10b] + MySQL v0.7.1
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[189a3867] + Reexport v0.2.0
[0aa819cd] + SQLite v0.8.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[228000da] + XMLDict v0.3.0
[a5390f91] + ZipFile v0.8.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS ─→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building SQLite ──→ `~/.julia/packages/SQLite/msdQN/deps/build.log`
Building DecFP ───→ `~/.julia/packages/DecFP/3jJW7/deps/build.log`
Building MySQL ───→ `~/.julia/packages/MySQL/R2gKS/deps/build.log`
Building Gumbo ───→ `~/.julia/packages/Gumbo/G7Qbw/deps/build.log`
Building EzXML ───→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Building ZipFile ─→ `~/.julia/packages/ZipFile/oD4uG/deps/build.log`
Building LightXML → `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Building LibCURL ─→ `~/.julia/packages/LibCURL/lWJxD/deps/build.log`
Testing BioMedQuery
Resolving package versions...
Status `/tmp/jl_BW16ZQ/Manifest.toml`
[1520ce14] AbstractTrees v0.2.1
[4c555306] ArrayLayouts v0.1.5
[b99e7846] BinaryProvider v0.5.8
[e96904bf] BioMedQuery v0.6.4
[a0d4ced5] BioServices v0.3.2
[336ed68f] CSV v0.5.18
[324d7699] CategoricalArrays v0.7.3
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[9a8bc11e] DataStreams v0.4.2
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[55939f99] DecFP v0.4.8
[8f5d6c58] EzXML v0.9.5
[01fcc997] FTPClient v1.0.1
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[708ec375] Gumbo v0.5.1
[cd3eb016] HTTP v0.8.8
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5078a376] LazyArrays v0.14.10
[b27032c2] LibCURL v0.5.2
[9c8b4983] LightXML v0.8.1
[1914dd2f] MacroTools v0.5.2
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[39abe10b] MySQL v0.7.1
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[189a3867] Reexport v0.2.0
[0aa819cd] SQLite v0.8.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.1
[228000da] XMLDict v0.3.0
[a5390f91] ZipFile v0.8.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
CI = true, TRAVIS = false
┌ Warning: MySQL tests not running
└ @ Main ~/.julia/packages/BioMedQuery/K4kwC/test/runtests.jl:24
Running tests:
-----------------------------------------
-----------------------------------------
Testing: DBUtils SQLite
-----------------------------------------
-----------------------------------------
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = select_all_tables(::SQLite.DB) at sqlite_db_utils.jl:19
└ @ BioMedQuery.DBUtils ~/.julia/packages/BioMedQuery/K4kwC/src/DBUtils/sqlite_db_utils.jl:19
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = insert_row!(::SQLite.DB, ::String, ::Dict{Symbol,Any}, ::Bool) at sqlite_db_utils.jl:59
└ @ BioMedQuery.DBUtils ~/.julia/packages/BioMedQuery/K4kwC/src/DBUtils/sqlite_db_utils.jl:59
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at dbutils_sqlite.jl:20
└ @ Core ~/.julia/packages/BioMedQuery/K4kwC/test/dbutils_sqlite.jl:20
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at dbutils_sqlite.jl:21
└ @ Core ~/.julia/packages/BioMedQuery/K4kwC/test/dbutils_sqlite.jl:21
Test Summary: | Pass Total
SQLite DBUtils | 3 3
-----------------------------------------
-----------------------------------------
Testing: Eutils/PubMed
-----------------------------------------
-----------------------------------------
-----------------------------------------
Testing ESearch/EFetch for PubMed
/opt/julia/bin/julia: symbol lookup error: /root/.julia/packages/MbedTLS/a1JFn/deps/usr/lib/libmbedtls.so: undefined symbol: mbedtls_x509_crt_verify_restartable
ERROR: Package BioMedQuery errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10