BioAlignments

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If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.

Results with Julia v1.2.0

Testing was successful. Last evaluation was ago and took 4 minutes, 4 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed YAML ──────────────── v0.3.2
 Installed Codecs ────────────── v0.5.0
 Installed Libz ──────────────── v1.0.0
 Installed IndexableBitVectors ─ v1.0.0
 Installed BioCore ───────────── v2.0.5
 Installed IntervalTrees ─────── v1.0.0
 Installed BinaryProvider ────── v0.5.8
 Installed BioAlignments ─────── v1.0.0
 Installed URIParser ─────────── v0.4.0
 Installed OrderedCollections ── v1.1.0
 Installed Polynomials ───────── v0.6.0
 Installed Compat ────────────── v2.2.0
 Installed BioSymbols ────────── v3.1.0
 Installed BGZFStreams ───────── v0.3.0
 Installed Automa ────────────── v0.8.0
 Installed RecipesBase ───────── v0.7.0
 Installed Combinatorics ─────── v0.7.0
 Installed DataStructures ────── v0.17.6
 Installed Twiddle ───────────── v1.1.1
 Installed CodecZlib ─────────── v0.6.0
 Installed FixedPointNumbers ─── v0.5.3
 Installed TranscodingStreams ── v0.9.5
 Installed BioSequences ──────── v1.1.0
 Installed BufferedStreams ───── v1.0.0
 Installed GenomicFeatures ───── v1.0.0
 Installed ColorTypes ────────── v0.8.0
  Updating `~/.julia/environments/v1.2/Project.toml`
  [00701ae9] + BioAlignments v1.0.0
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [28d598bf] + BGZFStreams v0.3.0
  [b99e7846] + BinaryProvider v0.5.8
  [00701ae9] + BioAlignments v1.0.0
  [37cfa864] + BioCore v2.0.5
  [7e6ae17a] + BioSequences v1.1.0
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [944b1d66] + CodecZlib v0.6.0
  [19ecbf4d] + Codecs v0.5.0
  [3da002f7] + ColorTypes v0.8.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [864edb3b] + DataStructures v0.17.6
  [53c48c17] + FixedPointNumbers v0.5.3
  [899a7d2d] + GenomicFeatures v1.0.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [2ec943e9] + Libz v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.6.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.1
  [30578b45] + URIParser v0.4.0
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
   Testing BioAlignments
 Resolving package versions...
    Status `/tmp/jl_YUp4S4/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [28d598bf] BGZFStreams v0.3.0
  [b99e7846] BinaryProvider v0.5.8
  [00701ae9] BioAlignments v1.0.0
  [37cfa864] BioCore v2.0.5
  [7e6ae17a] BioSequences v1.1.0
  [3c28c6f8] BioSymbols v3.1.0
  [e1450e63] BufferedStreams v1.0.0
  [944b1d66] CodecZlib v0.6.0
  [19ecbf4d] Codecs v0.5.0
  [3da002f7] ColorTypes v0.8.0
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [864edb3b] DataStructures v0.17.6
  [53c48c17] FixedPointNumbers v0.5.3
  [899a7d2d] GenomicFeatures v1.0.0
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [524e6230] IntervalTrees v1.0.0
  [2ec943e9] Libz v1.0.0
  [bac558e1] OrderedCollections v1.1.0
  [f27b6e38] Polynomials v0.6.0
  [3cdcf5f2] RecipesBase v0.7.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.1
  [30578b45] URIParser v0.4.0
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9abbd945] Profile  [`@stdlib/Profile`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Alignments    |  340    340
Test Summary:     | Pass  Total
PairwiseAlignment |  227    227
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
SAM           |  100    100
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
BAM           |  140    140
   Testing BioAlignments tests passed 

Results with Julia v1.3.0

Testing was successful. Last evaluation was ago and took 3 minutes, 58 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed YAML ──────────────── v0.3.2
 Installed URIParser ─────────── v0.4.0
 Installed Compat ────────────── v2.2.0
 Installed BioSymbols ────────── v3.1.0
 Installed DataStructures ────── v0.17.6
 Installed BinaryProvider ────── v0.5.8
 Installed GenomicFeatures ───── v1.0.0
 Installed BioAlignments ─────── v1.0.0
 Installed Libz ──────────────── v1.0.0
 Installed Combinatorics ─────── v0.7.0
 Installed RecipesBase ───────── v0.7.0
 Installed FixedPointNumbers ─── v0.5.3
 Installed BGZFStreams ───────── v0.3.0
 Installed ColorTypes ────────── v0.8.0
 Installed Codecs ────────────── v0.5.0
 Installed OrderedCollections ── v1.1.0
 Installed IndexableBitVectors ─ v1.0.0
 Installed BioSequences ──────── v1.1.0
 Installed CodecZlib ─────────── v0.6.0
 Installed Twiddle ───────────── v1.1.1
 Installed Polynomials ───────── v0.6.0
 Installed BufferedStreams ───── v1.0.0
 Installed TranscodingStreams ── v0.9.5
 Installed IntervalTrees ─────── v1.0.0
 Installed Automa ────────────── v0.8.0
 Installed BioCore ───────────── v2.0.5
  Updating `~/.julia/environments/v1.3/Project.toml`
  [00701ae9] + BioAlignments v1.0.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [28d598bf] + BGZFStreams v0.3.0
  [b99e7846] + BinaryProvider v0.5.8
  [00701ae9] + BioAlignments v1.0.0
  [37cfa864] + BioCore v2.0.5
  [7e6ae17a] + BioSequences v1.1.0
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [944b1d66] + CodecZlib v0.6.0
  [19ecbf4d] + Codecs v0.5.0
  [3da002f7] + ColorTypes v0.8.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [864edb3b] + DataStructures v0.17.6
  [53c48c17] + FixedPointNumbers v0.5.3
  [899a7d2d] + GenomicFeatures v1.0.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [2ec943e9] + Libz v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.6.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.1
  [30578b45] + URIParser v0.4.0
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
   Testing BioAlignments
 Resolving package versions...
    Status `/tmp/jl_Q1jq9R/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [28d598bf] BGZFStreams v0.3.0
  [b99e7846] BinaryProvider v0.5.8
  [00701ae9] BioAlignments v1.0.0
  [37cfa864] BioCore v2.0.5
  [7e6ae17a] BioSequences v1.1.0
  [3c28c6f8] BioSymbols v3.1.0
  [e1450e63] BufferedStreams v1.0.0
  [944b1d66] CodecZlib v0.6.0
  [19ecbf4d] Codecs v0.5.0
  [3da002f7] ColorTypes v0.8.0
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [864edb3b] DataStructures v0.17.6
  [53c48c17] FixedPointNumbers v0.5.3
  [899a7d2d] GenomicFeatures v1.0.0
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [524e6230] IntervalTrees v1.0.0
  [2ec943e9] Libz v1.0.0
  [bac558e1] OrderedCollections v1.1.0
  [f27b6e38] Polynomials v0.6.0
  [3cdcf5f2] RecipesBase v0.7.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.1
  [30578b45] URIParser v0.4.0
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9abbd945] Profile  [`@stdlib/Profile`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Alignments    |  344    344
Test Summary:     | Pass  Total
PairwiseAlignment |  227    227
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Your branch is up to date with 'origin/master'.
Already on 'master'
Test Summary: | Pass  Total
SAM           |  100    100
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
BAM           |  140    140
   Testing BioAlignments tests passed 

Results with Julia v1.3.1-pre-7704df0a5a

Testing was successful. Last evaluation was ago and took 4 minutes, 6 seconds.

Click here to download the log file.

 Resolving package versions...
 Installed ColorTypes ────────── v0.8.0
 Installed Compat ────────────── v2.2.0
 Installed Polynomials ───────── v0.6.0
 Installed BioCore ───────────── v2.0.5
 Installed DataStructures ────── v0.17.6
 Installed Automa ────────────── v0.8.0
 Installed IntervalTrees ─────── v1.0.0
 Installed BioAlignments ─────── v1.0.0
 Installed URIParser ─────────── v0.4.0
 Installed CodecZlib ─────────── v0.6.0
 Installed BioSymbols ────────── v3.1.0
 Installed BinaryProvider ────── v0.5.8
 Installed Libz ──────────────── v1.0.0
 Installed BufferedStreams ───── v1.0.0
 Installed FixedPointNumbers ─── v0.5.3
 Installed YAML ──────────────── v0.3.2
 Installed Twiddle ───────────── v1.1.1
 Installed TranscodingStreams ── v0.9.5
 Installed Codecs ────────────── v0.5.0
 Installed RecipesBase ───────── v0.7.0
 Installed BGZFStreams ───────── v0.3.0
 Installed GenomicFeatures ───── v1.0.0
 Installed Combinatorics ─────── v0.7.0
 Installed OrderedCollections ── v1.1.0
 Installed IndexableBitVectors ─ v1.0.0
 Installed BioSequences ──────── v1.1.0
  Updating `~/.julia/environments/v1.3/Project.toml`
  [00701ae9] + BioAlignments v1.0.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [28d598bf] + BGZFStreams v0.3.0
  [b99e7846] + BinaryProvider v0.5.8
  [00701ae9] + BioAlignments v1.0.0
  [37cfa864] + BioCore v2.0.5
  [7e6ae17a] + BioSequences v1.1.0
  [3c28c6f8] + BioSymbols v3.1.0
  [e1450e63] + BufferedStreams v1.0.0
  [944b1d66] + CodecZlib v0.6.0
  [19ecbf4d] + Codecs v0.5.0
  [3da002f7] + ColorTypes v0.8.0
  [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v2.2.0
  [864edb3b] + DataStructures v0.17.6
  [53c48c17] + FixedPointNumbers v0.5.3
  [899a7d2d] + GenomicFeatures v1.0.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.0.0
  [2ec943e9] + Libz v1.0.0
  [bac558e1] + OrderedCollections v1.1.0
  [f27b6e38] + Polynomials v0.6.0
  [3cdcf5f2] + RecipesBase v0.7.0
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.1
  [30578b45] + URIParser v0.4.0
  [ddb6d928] + YAML v0.3.2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
   Testing BioAlignments
 Resolving package versions...
    Status `/tmp/jl_0RQ6Zx/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [28d598bf] BGZFStreams v0.3.0
  [b99e7846] BinaryProvider v0.5.8
  [00701ae9] BioAlignments v1.0.0
  [37cfa864] BioCore v2.0.5
  [7e6ae17a] BioSequences v1.1.0
  [3c28c6f8] BioSymbols v3.1.0
  [e1450e63] BufferedStreams v1.0.0
  [944b1d66] CodecZlib v0.6.0
  [19ecbf4d] Codecs v0.5.0
  [3da002f7] ColorTypes v0.8.0
  [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v2.2.0
  [864edb3b] DataStructures v0.17.6
  [53c48c17] FixedPointNumbers v0.5.3
  [899a7d2d] GenomicFeatures v1.0.0
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [524e6230] IntervalTrees v1.0.0
  [2ec943e9] Libz v1.0.0
  [bac558e1] OrderedCollections v1.1.0
  [f27b6e38] Polynomials v0.6.0
  [3cdcf5f2] RecipesBase v0.7.0
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.1
  [30578b45] URIParser v0.4.0
  [ddb6d928] YAML v0.3.2
  [2a0f44e3] Base64  [`@stdlib/Base64`]
  [ade2ca70] Dates  [`@stdlib/Dates`]
  [8bb1440f] DelimitedFiles  [`@stdlib/DelimitedFiles`]
  [8ba89e20] Distributed  [`@stdlib/Distributed`]
  [b77e0a4c] InteractiveUtils  [`@stdlib/InteractiveUtils`]
  [76f85450] LibGit2  [`@stdlib/LibGit2`]
  [8f399da3] Libdl  [`@stdlib/Libdl`]
  [37e2e46d] LinearAlgebra  [`@stdlib/LinearAlgebra`]
  [56ddb016] Logging  [`@stdlib/Logging`]
  [d6f4376e] Markdown  [`@stdlib/Markdown`]
  [a63ad114] Mmap  [`@stdlib/Mmap`]
  [44cfe95a] Pkg  [`@stdlib/Pkg`]
  [de0858da] Printf  [`@stdlib/Printf`]
  [9abbd945] Profile  [`@stdlib/Profile`]
  [3fa0cd96] REPL  [`@stdlib/REPL`]
  [9a3f8284] Random  [`@stdlib/Random`]
  [ea8e919c] SHA  [`@stdlib/SHA`]
  [9e88b42a] Serialization  [`@stdlib/Serialization`]
  [1a1011a3] SharedArrays  [`@stdlib/SharedArrays`]
  [6462fe0b] Sockets  [`@stdlib/Sockets`]
  [2f01184e] SparseArrays  [`@stdlib/SparseArrays`]
  [10745b16] Statistics  [`@stdlib/Statistics`]
  [8dfed614] Test  [`@stdlib/Test`]
  [cf7118a7] UUIDs  [`@stdlib/UUIDs`]
  [4ec0a83e] Unicode  [`@stdlib/Unicode`]
Test Summary: | Pass  Total
Alignments    |  344    344
Test Summary:     | Pass  Total
PairwiseAlignment |  227    227
Cloning into '/root/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
SAM           |  100    100
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
BAM           |  140    140
   Testing BioAlignments tests passed