If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl, making sure to read the FAQ first.
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed Inflate ───────────────────── v0.1.1
Installed TableTraits ───────────────── v1.0.0
Installed LineSearches ──────────────── v7.0.1
Installed CSV ───────────────────────── v0.5.18
Installed Autologistic ──────────────── v0.4.1
Installed DataFrames ────────────────── v0.19.4
Installed PDMats ────────────────────── v0.9.10
Installed CommonSubexpressions ──────── v0.2.0
Installed BinaryProvider ────────────── v0.5.8
Installed StatsFuns ─────────────────── v0.9.0
Installed Colors ────────────────────── v0.9.6
Installed StatsBase ─────────────────── v0.32.0
Installed Measures ──────────────────── v0.3.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed URIParser ─────────────────── v0.4.0
Installed NLSolversBase ─────────────── v7.5.0
Installed DataValueInterfaces ───────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed InvertedIndices ───────────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed Compose ───────────────────── v0.7.3
Installed Compat ────────────────────── v2.2.0
Installed Requires ──────────────────── v0.5.2
Installed ForwardDiff ───────────────── v0.10.7
Installed Rmath ─────────────────────── v0.5.1
Installed OrderedCollections ────────── v1.1.0
Installed FilePathsBase ─────────────── v0.7.0
Installed Tables ────────────────────── v0.2.11
Installed IterTools ─────────────────── v1.3.0
Installed Calculus ──────────────────── v0.5.1
Installed WeakRefStrings ────────────── v0.6.1
Installed FixedPointNumbers ─────────── v0.6.1
Installed DataStructures ────────────── v0.17.6
Installed FillArrays ────────────────── v0.8.2
Installed Distributions ─────────────── v0.21.9
Installed LightGraphs ───────────────── v1.3.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Parsers ───────────────────── v0.3.10
Installed JSON ──────────────────────── v0.21.0
Installed DiffRules ─────────────────── v0.1.0
Installed StaticArrays ──────────────── v0.12.1
Installed ArrayInterface ────────────── v2.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed DiffResults ───────────────── v0.0.4
Installed SimpleTraits ──────────────── v0.9.1
Installed Parameters ────────────────── v0.12.0
Installed BenchmarkTools ────────────── v0.4.3
Installed CategoricalArrays ─────────── v0.7.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed QuadGK ────────────────────── v2.1.1
Installed MacroTools ────────────────── v0.5.2
Installed LazyArrays ────────────────── v0.14.10
Installed PositiveFactorizations ────── v0.2.3
Installed SpecialFunctions ──────────── v0.8.0
Installed ColorTypes ────────────────── v0.8.0
Installed BinDeps ───────────────────── v0.8.10
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Arpack ────────────────────── v0.3.1
Installed Optim ─────────────────────── v0.19.5
Updating `~/.julia/environments/v1.2/Project.toml`
[4d03fd4d] + Autologistic v0.4.1
Updating `~/.julia/environments/v1.2/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[4d03fd4d] + Autologistic v0.4.1
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[d25df0c9] + Inflate v0.1.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5078a376] + LazyArrays v0.14.10
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Testing Autologistic
Resolving package versions...
Status `/tmp/jl_LXovqm/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[4d03fd4d] Autologistic v0.4.1
[6e4b80f9] BenchmarkTools v0.4.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[d25df0c9] Inflate v0.1.1
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5078a376] LazyArrays v0.14.10
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Running tests:
Test Summary: | Pass Total
FullUnary constructors and interfaces | 7 7
Test Summary: | Pass Total
LinPredUnary constructors and interfaces | 5 5
Test Summary: | Pass Total
SimplePairwise constructors and interfaces | 3 3
Test Summary: | Pass Total
FullPairwise constructors and interfaces | 5 5
Test Summary: | Pass Total
ALRsimple constructors | 8 8
Test Summary: | Pass Total
ALsimple constructors | 14 14
Test Summary: | Pass Total
ALfull constructors | 7 7
Test Summary: | Pass Total
Helper functions | 15 15
Test Summary: | Pass Total
almodel_functions | 18 18
Test Summary: | Pass Total
samplers | 17 17
Calling Optim.optimize with BFGS method...
Iter Function value Gradient norm
0 6.025906e+00 7.306846e-01
* time: 0.005908012390136719
1 6.014610e+00 1.524670e-01
* time: 0.4660921096801758
2 6.013707e+00 7.146872e-02
* time: 0.6013529300689697
3 6.013491e+00 2.133966e-03
* time: 0.7316429615020752
4 6.013491e+00 9.904243e-06
* time: 0.8644309043884277
5 6.013491e+00 9.533817e-10
* time: 0.9927101135253906
Approximating the Hessian at the MLE...
Getting standard errors...
...completed successfully.
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:558
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:324
Test Summary: | Pass Total
ML and PL Estimation | 17 17
Test Summary: | Pass Total
ALfit type | 5 5
Testing Autologistic tests passed
Resolving package versions...
Installed URIParser ─────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed DiffResults ───────────────── v0.0.4
Installed Arpack ────────────────────── v0.3.1
Installed DataStructures ────────────── v0.17.6
Installed Autologistic ──────────────── v0.4.1
Installed LazyArrays ────────────────── v0.14.10
Installed CSV ───────────────────────── v0.5.18
Installed LineSearches ──────────────── v7.0.1
Installed StaticArrays ──────────────── v0.12.1
Installed QuadGK ────────────────────── v2.1.1
Installed CategoricalArrays ─────────── v0.7.3
Installed StatsFuns ─────────────────── v0.9.0
Installed Compat ────────────────────── v2.2.0
Installed Compose ───────────────────── v0.7.3
Installed InvertedIndices ───────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed BinaryProvider ────────────── v0.5.8
Installed Parsers ───────────────────── v0.3.10
Installed Missings ──────────────────── v0.4.3
Installed Rmath ─────────────────────── v0.5.1
Installed Parameters ────────────────── v0.12.0
Installed MacroTools ────────────────── v0.5.2
Installed TableTraits ───────────────── v1.0.0
Installed Distributions ─────────────── v0.21.9
Installed IterTools ─────────────────── v1.3.0
Installed PositiveFactorizations ────── v0.2.3
Installed OrderedCollections ────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed ArrayLayouts ──────────────── v0.1.5
Installed SpecialFunctions ──────────── v0.8.0
Installed CommonSubexpressions ──────── v0.2.0
Installed LightGraphs ───────────────── v1.3.0
Installed ColorTypes ────────────────── v0.8.0
Installed BinDeps ───────────────────── v0.8.10
Installed Tables ────────────────────── v0.2.11
Installed DataAPI ───────────────────── v1.1.0
Installed NaNMath ───────────────────── v0.3.3
Installed ForwardDiff ───────────────── v0.10.7
Installed DataValueInterfaces ───────── v1.0.0
Installed Optim ─────────────────────── v0.19.5
Installed DiffEqDiffTools ───────────── v1.5.0
Installed DiffRules ─────────────────── v0.1.0
Installed Calculus ──────────────────── v0.5.1
Installed ArrayInterface ────────────── v2.0.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Colors ────────────────────── v0.9.6
Installed Inflate ───────────────────── v0.1.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed FilePathsBase ─────────────── v0.7.0
Installed Requires ──────────────────── v0.5.2
Installed Measures ──────────────────── v0.3.0
Installed PooledArrays ──────────────── v0.5.2
Installed WeakRefStrings ────────────── v0.6.1
Installed SimpleTraits ──────────────── v0.9.1
Installed PDMats ────────────────────── v0.9.10
Installed FillArrays ────────────────── v0.8.2
Installed DataFrames ────────────────── v0.19.4
Installed Reexport ──────────────────── v0.2.0
Installed StatsBase ─────────────────── v0.32.0
Installed BenchmarkTools ────────────── v0.4.3
Updating `~/.julia/environments/v1.3/Project.toml`
[4d03fd4d] + Autologistic v0.4.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[4d03fd4d] + Autologistic v0.4.1
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[d25df0c9] + Inflate v0.1.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5078a376] + LazyArrays v0.14.10
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing Autologistic
Resolving package versions...
Status `/tmp/jl_8KGYet/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[4d03fd4d] Autologistic v0.4.1
[6e4b80f9] BenchmarkTools v0.4.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[d25df0c9] Inflate v0.1.1
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5078a376] LazyArrays v0.14.10
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Running tests:
Test Summary: | Pass Total
FullUnary constructors and interfaces | 7 7
Test Summary: | Pass Total
LinPredUnary constructors and interfaces | 5 5
Test Summary: | Pass Total
SimplePairwise constructors and interfaces | 3 3
Test Summary: | Pass Total
FullPairwise constructors and interfaces | 5 5
Test Summary: | Pass Total
ALRsimple constructors | 8 8
Test Summary: | Pass Total
ALsimple constructors | 14 14
Test Summary: | Pass Total
ALfull constructors | 7 7
Test Summary: | Pass Total
Helper functions | 15 15
Test Summary: | Pass Total
almodel_functions | 18 18
Test Summary: | Pass Total
samplers | 17 17
Calling Optim.optimize with BFGS method...
Iter Function value Gradient norm
0 6.025906e+00 7.306846e-01
* time: 6.198883056640625e-5
1 6.014610e+00 1.524670e-01
* time: 0.5176770687103271
2 6.013707e+00 7.146872e-02
* time: 0.6759531497955322
3 6.013491e+00 2.133966e-03
* time: 0.8229920864105225
4 6.013491e+00 9.904243e-06
* time: 0.9743740558624268
5 6.013491e+00 9.533817e-10
* time: 1.126258134841919
Approximating the Hessian at the MLE...
Getting standard errors...
...completed successfully.
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:558
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:324
Test Summary: | Pass Total
ML and PL Estimation | 17 17
Test Summary: | Pass Total
ALfit type | 5 5
Testing Autologistic tests passed
Resolving package versions...
Installed WeakRefStrings ────────────── v0.6.1
Installed ColorTypes ────────────────── v0.8.0
Installed QuadGK ────────────────────── v2.1.1
Installed DataStructures ────────────── v0.17.6
Installed Colors ────────────────────── v0.9.6
Installed Autologistic ──────────────── v0.4.1
Installed Optim ─────────────────────── v0.19.5
Installed LightGraphs ───────────────── v1.3.0
Installed NaNMath ───────────────────── v0.3.3
Installed Tables ────────────────────── v0.2.11
Installed LazyArrays ────────────────── v0.14.10
Installed Compose ───────────────────── v0.7.3
Installed Compat ────────────────────── v2.2.0
Installed SpecialFunctions ──────────── v0.8.0
Installed ArrayLayouts ──────────────── v0.1.5
Installed StaticArrays ──────────────── v0.12.1
Installed BinDeps ───────────────────── v0.8.10
Installed DiffResults ───────────────── v0.0.4
Installed DataFrames ────────────────── v0.19.4
Installed IterTools ─────────────────── v1.3.0
Installed BenchmarkTools ────────────── v0.4.3
Installed MacroTools ────────────────── v0.5.2
Installed FixedPointNumbers ─────────── v0.6.1
Installed StatsBase ─────────────────── v0.32.0
Installed Inflate ───────────────────── v0.1.1
Installed ForwardDiff ───────────────── v0.10.7
Installed FillArrays ────────────────── v0.8.2
Installed LineSearches ──────────────── v7.0.1
Installed Missings ──────────────────── v0.4.3
Installed URIParser ─────────────────── v0.4.0
Installed Calculus ──────────────────── v0.5.1
Installed Arpack ────────────────────── v0.3.1
Installed PooledArrays ──────────────── v0.5.2
Installed CommonSubexpressions ──────── v0.2.0
Installed TableTraits ───────────────── v1.0.0
Installed NLSolversBase ─────────────── v7.5.0
Installed StatsFuns ─────────────────── v0.9.0
Installed FilePathsBase ─────────────── v0.7.0
Installed Parameters ────────────────── v0.12.0
Installed InvertedIndices ───────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed Rmath ─────────────────────── v0.5.1
Installed ArrayInterface ────────────── v2.0.0
Installed Requires ──────────────────── v0.5.2
Installed DataValueInterfaces ───────── v1.0.0
Installed Measures ──────────────────── v0.3.0
Installed DiffRules ─────────────────── v0.1.0
Installed SimpleTraits ──────────────── v0.9.1
Installed PositiveFactorizations ────── v0.2.3
Installed JSON ──────────────────────── v0.21.0
Installed Distributions ─────────────── v0.21.9
Installed Reexport ──────────────────── v0.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed PDMats ────────────────────── v0.9.10
Installed CSV ───────────────────────── v0.5.18
Installed SortingAlgorithms ─────────── v0.3.1
Installed Parsers ───────────────────── v0.3.10
Installed ArnoldiMethod ─────────────── v0.0.4
Installed OrderedCollections ────────── v1.1.0
Installed DiffEqDiffTools ───────────── v1.5.0
Updating `~/.julia/environments/v1.3/Project.toml`
[4d03fd4d] + Autologistic v0.4.1
Updating `~/.julia/environments/v1.3/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.3.1
[4fba245c] + ArrayInterface v2.0.0
[4c555306] + ArrayLayouts v0.1.5
[4d03fd4d] + Autologistic v0.4.1
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.18
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[3da002f7] + ColorTypes v0.8.0
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.7.3
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.5.0
[163ba53b] + DiffResults v0.0.4
[b552c78f] + DiffRules v0.1.0
[31c24e10] + Distributions v0.21.9
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.7
[d25df0c9] + Inflate v0.1.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5078a376] + LazyArrays v0.14.10
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.2
[442fdcdd] + Measures v0.3.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[429524aa] + Optim v0.19.5
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.5.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Building Arpack ──────────→ `~/.julia/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.julia/packages/Rmath/4wt82/deps/build.log`
Testing Autologistic
Resolving package versions...
Status `/tmp/jl_6IxIyQ/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.3.1
[4fba245c] ArrayInterface v2.0.0
[4c555306] ArrayLayouts v0.1.5
[4d03fd4d] Autologistic v0.4.1
[6e4b80f9] BenchmarkTools v0.4.3
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.18
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[3da002f7] ColorTypes v0.8.0
[5ae59095] Colors v0.9.6
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[a81c6b42] Compose v0.7.3
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[31c24e10] Distributions v0.21.9
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.2
[53c48c17] FixedPointNumbers v0.6.1
[f6369f11] ForwardDiff v0.10.7
[d25df0c9] Inflate v0.1.1
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5078a376] LazyArrays v0.14.10
[093fc24a] LightGraphs v1.3.0
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.2
[442fdcdd] Measures v0.3.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.3
[429524aa] Optim v0.19.5
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.10
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.1.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.5.1
[699a6c99] SimpleTraits v0.9.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.1
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Running tests:
Test Summary: | Pass Total
FullUnary constructors and interfaces | 7 7
Test Summary: | Pass Total
LinPredUnary constructors and interfaces | 5 5
Test Summary: | Pass Total
SimplePairwise constructors and interfaces | 3 3
Test Summary: | Pass Total
FullPairwise constructors and interfaces | 5 5
Test Summary: | Pass Total
ALRsimple constructors | 8 8
Test Summary: | Pass Total
ALsimple constructors | 14 14
Test Summary: | Pass Total
ALfull constructors | 7 7
Test Summary: | Pass Total
Helper functions | 15 15
Test Summary: | Pass Total
almodel_functions | 18 18
Test Summary: | Pass Total
samplers | 17 17
Calling Optim.optimize with BFGS method...
Iter Function value Gradient norm
0 6.025906e+00 7.306846e-01
* time: 0.00043201446533203125
1 6.014610e+00 1.524670e-01
* time: 0.4790620803833008
2 6.013707e+00 7.146872e-02
* time: 0.6284749507904053
3 6.013491e+00 2.133966e-03
* time: 0.7806360721588135
4 6.013491e+00 9.904243e-06
* time: 0.9325459003448486
5 6.013491e+00 9.533817e-10
* time: 1.1154439449310303
Approximating the Hessian at the MLE...
Getting standard errors...
...completed successfully.
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:558
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:324
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/cySrA/src/abstractautologisticmodel_type.jl:324
ML and PL Estimation: Error During Test at /root/.julia/packages/Autologistic/cySrA/test/runtests.jl:355
Got exception outside of a @test
DimensionMismatch("tried to assign 0-element array to 2×1 destination")
Stacktrace:
[1] throw_setindex_mismatch(::Array{Float64,1}, ::Tuple{Int64,Int64}) at ./indices.jl:169
[2] setindex_shape_check at ./indices.jl:221 [inlined]
[3] macro expansion at ./multidimensional.jl:722 [inlined]
[4] _unsafe_setindex!(::IndexLinear, ::Array{Float64,2}, ::Array{Float64,1}, ::Base.Slice{Base.OneTo{Int64}}, ::Int64) at ./multidimensional.jl:717
[5] _setindex! at ./multidimensional.jl:712 [inlined]
[6] setindex!(::Array{Float64,2}, ::Array{Float64,1}, ::Function, ::Int64) at ./abstractarray.jl:1074
[7] top-level scope at /root/.julia/packages/Autologistic/cySrA/test/runtests.jl:393
[8] top-level scope at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[9] top-level scope at /root/.julia/packages/Autologistic/cySrA/test/runtests.jl:356
[10] include at ./boot.jl:328 [inlined]
[11] include_relative(::Module, ::String) at ./loading.jl:1105
[12] include(::Module, ::String) at ./Base.jl:31
[13] include(::String) at ./client.jl:424
[14] top-level scope at none:6
[15] eval(::Module, ::Any) at ./boot.jl:330
[16] exec_options(::Base.JLOptions) at ./client.jl:263
[17] _start() at ./client.jl:460
Test Summary: | Pass Error Total
ML and PL Estimation | 13 1 14
ERROR: LoadError: Some tests did not pass: 13 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /root/.julia/packages/Autologistic/cySrA/test/runtests.jl:355
ERROR: Package Autologistic errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1370
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/julia/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:10