If you think that there is an error in how your package is being tested or represented, please file an issue at NewPkgEval.jl , making sure to read the FAQ first.
Results with Julia v1.2.0
Testing was successful .
Last evaluation was ago and took 12 minutes, 42 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed FieldMetadata ─────────────── v0.1.1
Installed Missings ──────────────────── v0.4.3
Installed DataAPI ───────────────────── v1.1.0
Installed MbedTLS ───────────────────── v0.7.0
Installed TableTraits ───────────────── v1.0.0
Installed AIBECS ────────────────────── v0.3.2
Installed BinaryProvider ────────────── v0.5.8
Installed DataFrames ────────────────── v0.19.4
Installed DiffEqBase ────────────────── v6.7.0
Installed OceanGrids ────────────────── v0.1.3
Installed AxisAlgorithms ────────────── v1.0.0
Installed DualMatrixTools ───────────── v1.2.5
Installed URIParser ─────────────────── v0.4.0
Installed DataDeps ──────────────────── v0.7.1
Installed DocStringExtensions ───────── v0.8.1
Installed BSON ──────────────────────── v0.2.4
Installed Requires ──────────────────── v0.5.2
Installed PooledArrays ──────────────── v0.5.2
Installed InvertedIndices ───────────── v1.0.0
Installed Flatten ───────────────────── v0.2.1
Installed Reexport ──────────────────── v0.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed HyperDualMatrixTools ──────── v2.0.2
Installed FunctionWrappers ──────────── v1.0.0
Installed OffsetArrays ──────────────── v0.11.2
Installed Tables ────────────────────── v0.2.11
Installed OrderedCollections ────────── v1.1.0
Installed Calculus ──────────────────── v0.5.1
Installed IniFile ───────────────────── v0.5.0
Installed UnitfulAstro ──────────────── v0.4.0
Installed RecipesBase ───────────────── v0.7.0
Installed TreeViews ─────────────────── v0.3.0
Installed Roots ─────────────────────── v0.8.3
Installed DataStructures ────────────── v0.17.6
Installed DualNumbers ───────────────── v0.6.2
Installed IterativeSolvers ──────────── v0.8.1
Installed UnitfulAngles ─────────────── v0.5.0
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Parsers ───────────────────── v0.3.10
Installed RecursiveFactorization ────── v0.1.0
Installed Ratios ────────────────────── v0.3.1
Installed NaNMath ───────────────────── v0.3.3
Installed RecursiveArrayTools ───────── v1.2.0
Installed JSON ──────────────────────── v0.21.0
Installed ArrayInterface ────────────── v2.0.0
Installed HTTP ──────────────────────── v0.8.8
Installed StaticArrays ──────────────── v0.12.1
Installed Parameters ────────────────── v0.12.0
Installed MuladdMacro ───────────────── v0.2.1
Installed Interpolations ────────────── v0.12.5
Installed CategoricalArrays ─────────── v0.7.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed Unitful ───────────────────── v0.17.0
Installed Distances ─────────────────── v0.8.2
Installed SortingAlgorithms ─────────── v0.3.1
Installed MacroTools ────────────────── v0.5.2
Installed BinDeps ───────────────────── v0.8.10
Installed HyperDualNumbers ──────────── v4.0.0
Installed SpecialFunctions ──────────── v0.8.0
Updating `~/.julia/environments/v1.2/Project.toml`
[ace601d6] + AIBECS v0.3.2
Updating `~/.julia/environments/v1.2/Manifest.toml`
[ace601d6] + AIBECS v0.3.2
[4fba245c] + ArrayInterface v2.0.0
[13072b0f] + AxisAlgorithms v1.0.0
[fbb218c0] + BSON v0.2.4
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[124859b0] + DataDeps v0.7.1
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.7.0
[01453d9d] + DiffEqDiffTools v1.5.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[31f4e45d] + DualMatrixTools v1.2.5
[fa6b7ba4] + DualNumbers v0.6.2
[bf96fef3] + FieldMetadata v0.1.1
[4c728ea3] + Flatten v0.2.1
[069b7b12] + FunctionWrappers v1.0.0
[cd3eb016] + HTTP v0.8.8
[04d39a18] + HyperDualMatrixTools v2.0.2
[50ceba7f] + HyperDualNumbers v4.0.0
[83e8ac13] + IniFile v0.5.0
[a98d9a8b] + Interpolations v0.12.5
[41ab1584] + InvertedIndices v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[77ba4419] + NaNMath v0.3.3
[cfe838f4] + OceanGrids v0.1.3
[6fe1bfb0] + OffsetArrays v0.11.2
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[1986cc42] + Unitful v0.17.0
[6fb2a4bd] + UnitfulAngles v0.5.0
[6112ee07] + UnitfulAstro v0.4.0
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS ─────────→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing AIBECS
Resolving package versions...
Installed ForwardDiff ────────── v0.10.7
Installed NearestNeighbors ───── v0.4.4
Installed CFTime ─────────────── v0.0.3
Installed CondaBinDeps ───────── v0.1.0
Installed Conda ──────────────── v1.3.0
Installed WorldOceanAtlasTools ─ v0.3.3
Installed CommonSubexpressions ─ v0.2.0
Installed StatsBase ──────────── v0.32.0
Installed Match ──────────────── v1.0.2
Installed DiffRules ──────────── v0.1.0
Installed DiffResults ────────── v0.0.4
Installed VersionParsing ─────── v1.1.3
Installed NCDatasets ─────────── v0.9.5
Building Conda ─────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building NCDatasets → `~/.julia/packages/NCDatasets/uW2kc/deps/build.log`
Status `/tmp/jl_9TZu2U/Manifest.toml`
[ace601d6] AIBECS v0.3.2
[4fba245c] ArrayInterface v2.0.0
[13072b0f] AxisAlgorithms v1.0.0
[fbb218c0] BSON v0.2.4
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[179af706] CFTime v0.0.3
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[a9693cdc] CondaBinDeps v0.1.0
[9a962f9c] DataAPI v1.1.0
[124859b0] DataDeps v0.7.1
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[31f4e45d] DualMatrixTools v1.2.5
[fa6b7ba4] DualNumbers v0.6.2
[bf96fef3] FieldMetadata v0.1.1
[4c728ea3] Flatten v0.2.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[cd3eb016] HTTP v0.8.8
[04d39a18] HyperDualMatrixTools v2.0.2
[50ceba7f] HyperDualNumbers v4.0.0
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.5
[41ab1584] InvertedIndices v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.2
[7eb4fadd] Match v1.0.2
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[85f8d34a] NCDatasets v0.9.5
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[cfe838f4] OceanGrids v0.1.3
[6fe1bfb0] OffsetArrays v0.11.2
[bac558e1] OrderedCollections v1.1.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[1986cc42] Unitful v0.17.0
[6fb2a4bd] UnitfulAngles v0.5.0
[6112ee07] UnitfulAstro v0.4.0
[81def892] VersionParsing v1.1.3
[efce3f68] WoodburyMatrices v0.4.1
[04f20302] WorldOceanAtlasTools v0.3.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Creating 6-box model ✔
┌ Info: You are about to use the 3-box model of Archer et al. [2000].
│ If you use it for research, please cite:
│
│ - Archer, D. E., Eshel, G., Winguth, A., Broecker, W., Pierrehumbert, R., Tobis, M., and Jacob, R. (2000), Atmospheric pCO2 sensitivity to the biological pump in the ocean, Global Biogeochem. Cycles, 14 (4), 1219–1230, doi:10.1029/1999GB001216.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
│ (Look for the "Archer_etal_2000" key.)
│
│ Note that although this model represents the 3-box model of Archer et al. [2000],
│ it effectively requires 6 boxes to represent in the AIBECS,
│ so that particulate sinking flux divergence operators can be built.
└ (See the comments at the start of the Archer_etal_2000.jl file for details.)
Test Summary: | Pass Total
Archer_etal_2000 3-box model | 19 19
Creating François Primeau's 2x2x2 model ✔
You should see a warning below:
┌ Warning: The name `Parameters` is already used.
│ Will error if you changed the set of parameters.
│ You can specify the name of the new parameters type via the syntax:
│
│ julia> initialize_Parameters_type(t, PName)
│
│ See examples in the documentation of `initialize_Parameters_type`.
│ (Type `?` and then `initialize_Parameters_type` to see the help.)
└ @ AIBECS ~/.julia/packages/AIBECS/4OgYz/src/Parameters.jl:116
Parameters{Float64}
xgeo = 2.17e+00 [mmol m⁻³] (fixed)
τgeo = 1.00e+00 [Myr] (fixed)
k = 1.00e+01 [μmol m⁻³]
z₀ = 8.00e+01 [m] (fixed)
w₀ = 1.00e+00 [m d⁻¹]
w′ = 2.24e-01 [d⁻¹]
κDOP = 4.00e+00 [yr⁻¹]
κPOP = 1.90e-01 [d⁻¹]
σ = 3.00e-01 [] (fixed)
τ = 3.00e+01 [d]
Parameters{Complex{Float64}}
xgeo = 2.17e+00 + 0.00e+00i [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00i [Myr] (fixed)
k = 0.00e+00 + 1.00e+01i [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00i [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00i [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01i [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00i [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01i [d⁻¹]
σ = 3.00e-01 + 0.00e+00i [] (fixed)
τ = 0.00e+00 + 3.00e+01i [d]
Parameters{Dual{Float64}}
xgeo = 2.17e+00 + 0.00e+00ε [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00ε [Myr] (fixed)
k = 0.00e+00 + 1.00e+01ε [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00ε [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00ε [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01ε [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00ε [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01ε [d⁻¹]
σ = 3.00e-01 + 0.00e+00ε [] (fixed)
τ = 0.00e+00 + 3.00e+01ε [d]
Parameters{Hyper{Float64}}
xgeo = 2.17e+00 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [Myr] (fixed)
k = 0.00e+00 + 1.00e+01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d⁻¹]
σ = 3.00e-01 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [] (fixed)
τ = 0.00e+00 + 3.00e+01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d]
Registering World Ocean Atlas data with DataDeps
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/StiyS/src/functions.jl:138
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "53a32321db4115a939f50c8d767f0df4e7263117e4afc8fd98ca861f67223eec"
└ @ DataDeps ~/.julia/packages/DataDeps/ai3FE/src/verification.jl:44
Reading NetCDF file
Rearranging data
Filtering data
Averaging data over each grid box
Setting μ = 0 and σ² = ∞ where no obs
Setting a realistic minimum for σ²
Test Summary: | Pass Total
Primeau's 6-box model | 84 84
Loading OCIM1 ✔
┌ Info: You are about to use OCIM1 model.
│ If you use it for research, please cite:
│
│ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.)
Test Summary: | Pass Total
OCIM1 | 19 19
Loading OCIM0.1 ✔
┌ Info: You are about to use OCIM0.1 model.
│ If you use it for research, please cite:
│
│ - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.)
Test Summary: | Pass Total
OCIM0.1 | 19 19
Testing AIBECS tests passed
Results with Julia v1.3.0
Testing was successful .
Last evaluation was ago and took 12 minutes, 39 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed IniFile ───────────────────── v0.5.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed Unitful ───────────────────── v0.17.0
Installed UnitfulAstro ──────────────── v0.4.0
Installed DataStructures ────────────── v0.17.6
Installed AIBECS ────────────────────── v0.3.2
Installed Roots ─────────────────────── v0.8.3
Installed StaticArrays ──────────────── v0.12.1
Installed DocStringExtensions ───────── v0.8.1
Installed BinaryProvider ────────────── v0.5.8
Installed FunctionWrappers ──────────── v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed Compat ────────────────────── v2.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed HyperDualMatrixTools ──────── v2.0.2
Installed TreeViews ─────────────────── v0.3.0
Installed Missings ──────────────────── v0.4.3
Installed Parameters ────────────────── v0.12.0
Installed Parsers ───────────────────── v0.3.10
Installed MacroTools ────────────────── v0.5.2
Installed UnitfulAngles ─────────────── v0.5.0
Installed TableTraits ───────────────── v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed OrderedCollections ────────── v1.1.0
Installed SpecialFunctions ──────────── v0.9.0
Installed FieldMetadata ─────────────── v0.1.1
Installed RecipesBase ───────────────── v0.7.0
Installed DataAPI ───────────────────── v1.1.0
Installed BSON ──────────────────────── v0.2.4
Installed Distances ─────────────────── v0.8.2
Installed DualMatrixTools ───────────── v1.2.5
Installed OceanGrids ────────────────── v0.1.3
Installed DataDeps ──────────────────── v0.7.1
Installed Interpolations ────────────── v0.12.5
Installed Tables ────────────────────── v0.2.11
Installed MbedTLS ───────────────────── v0.7.0
Installed DualNumbers ───────────────── v0.6.2
Installed Calculus ──────────────────── v0.5.1
Installed DataValueInterfaces ───────── v1.0.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed ArrayInterface ────────────── v2.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed DiffEqDiffTools ───────────── v1.5.0
Installed Requires ──────────────────── v0.5.2
Installed DiffEqBase ────────────────── v6.7.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed HTTP ──────────────────────── v0.8.8
Installed MuladdMacro ───────────────── v0.2.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed RecursiveFactorization ────── v0.1.0
Installed Flatten ───────────────────── v0.2.1
Installed DataFrames ────────────────── v0.19.4
Installed OffsetArrays ──────────────── v0.11.2
Installed Reexport ──────────────────── v0.2.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed HyperDualNumbers ──────────── v4.0.0
Installed IterativeSolvers ──────────── v0.8.1
Updating `~/.julia/environments/v1.3/Project.toml`
[ace601d6] + AIBECS v0.3.2
Updating `~/.julia/environments/v1.3/Manifest.toml`
[ace601d6] + AIBECS v0.3.2
[4fba245c] + ArrayInterface v2.0.0
[13072b0f] + AxisAlgorithms v1.0.0
[fbb218c0] + BSON v0.2.4
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[124859b0] + DataDeps v0.7.1
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.7.0
[01453d9d] + DiffEqDiffTools v1.5.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[31f4e45d] + DualMatrixTools v1.2.5
[fa6b7ba4] + DualNumbers v0.6.2
[bf96fef3] + FieldMetadata v0.1.1
[4c728ea3] + Flatten v0.2.1
[069b7b12] + FunctionWrappers v1.0.0
[cd3eb016] + HTTP v0.8.8
[04d39a18] + HyperDualMatrixTools v2.0.2
[50ceba7f] + HyperDualNumbers v4.0.0
[83e8ac13] + IniFile v0.5.0
[a98d9a8b] + Interpolations v0.12.5
[41ab1584] + InvertedIndices v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[77ba4419] + NaNMath v0.3.3
[cfe838f4] + OceanGrids v0.1.3
[6fe1bfb0] + OffsetArrays v0.11.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[a2a6695c] + TreeViews v0.3.0
[1986cc42] + Unitful v0.17.0
[6fb2a4bd] + UnitfulAngles v0.5.0
[6112ee07] + UnitfulAstro v0.4.0
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS → `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Testing AIBECS
Resolving package versions...
Installed ForwardDiff ────────── v0.10.7
Installed CommonSubexpressions ─ v0.2.0
Installed NearestNeighbors ───── v0.4.4
Installed WorldOceanAtlasTools ─ v0.3.3
Installed URIParser ──────────── v0.4.0
Installed Match ──────────────── v1.0.2
Installed CondaBinDeps ───────── v0.1.0
Installed DiffResults ────────── v0.0.4
Installed BinDeps ────────────── v0.8.10
Installed DiffRules ──────────── v0.1.0
Installed CFTime ─────────────── v0.0.3
Installed Conda ──────────────── v1.3.0
Installed VersionParsing ─────── v1.1.3
Installed StatsBase ──────────── v0.32.0
Installed NCDatasets ─────────── v0.9.5
Building Conda ─────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building NCDatasets → `~/.julia/packages/NCDatasets/uW2kc/deps/build.log`
Status `/tmp/jl_lIFl5f/Manifest.toml`
[ace601d6] AIBECS v0.3.2
[4fba245c] ArrayInterface v2.0.0
[13072b0f] AxisAlgorithms v1.0.0
[fbb218c0] BSON v0.2.4
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[179af706] CFTime v0.0.3
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[a9693cdc] CondaBinDeps v0.1.0
[9a962f9c] DataAPI v1.1.0
[124859b0] DataDeps v0.7.1
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[31f4e45d] DualMatrixTools v1.2.5
[fa6b7ba4] DualNumbers v0.6.2
[bf96fef3] FieldMetadata v0.1.1
[4c728ea3] Flatten v0.2.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[cd3eb016] HTTP v0.8.8
[04d39a18] HyperDualMatrixTools v2.0.2
[50ceba7f] HyperDualNumbers v4.0.0
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.5
[41ab1584] InvertedIndices v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.2
[7eb4fadd] Match v1.0.2
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[85f8d34a] NCDatasets v0.9.5
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[cfe838f4] OceanGrids v0.1.3
[6fe1bfb0] OffsetArrays v0.11.2
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[1986cc42] Unitful v0.17.0
[6fb2a4bd] UnitfulAngles v0.5.0
[6112ee07] UnitfulAstro v0.4.0
[81def892] VersionParsing v1.1.3
[efce3f68] WoodburyMatrices v0.4.1
[04f20302] WorldOceanAtlasTools v0.3.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Creating 6-box model ✔
┌ Info: You are about to use the 3-box model of Archer et al. [2000].
│ If you use it for research, please cite:
│
│ - Archer, D. E., Eshel, G., Winguth, A., Broecker, W., Pierrehumbert, R., Tobis, M., and Jacob, R. (2000), Atmospheric pCO2 sensitivity to the biological pump in the ocean, Global Biogeochem. Cycles, 14 (4), 1219–1230, doi:10.1029/1999GB001216.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
│ (Look for the "Archer_etal_2000" key.)
│
│ Note that although this model represents the 3-box model of Archer et al. [2000],
│ it effectively requires 6 boxes to represent in the AIBECS,
│ so that particulate sinking flux divergence operators can be built.
└ (See the comments at the start of the Archer_etal_2000.jl file for details.)
Test Summary: | Pass Total
Archer_etal_2000 3-box model | 19 19
Creating François Primeau's 2x2x2 model ✔
You should see a warning below:
┌ Warning: The name `Parameters` is already used.
│ Will error if you changed the set of parameters.
│ You can specify the name of the new parameters type via the syntax:
│
│ julia> initialize_Parameters_type(t, PName)
│
│ See examples in the documentation of `initialize_Parameters_type`.
│ (Type `?` and then `initialize_Parameters_type` to see the help.)
└ @ AIBECS ~/.julia/packages/AIBECS/4OgYz/src/Parameters.jl:116
Parameters{Float64}
xgeo = 2.17e+00 [mmol m⁻³] (fixed)
τgeo = 1.00e+00 [Myr] (fixed)
k = 1.00e+01 [μmol m⁻³]
z₀ = 8.00e+01 [m] (fixed)
w₀ = 1.00e+00 [m d⁻¹]
w′ = 2.24e-01 [d⁻¹]
κDOP = 4.00e+00 [yr⁻¹]
κPOP = 1.90e-01 [d⁻¹]
σ = 3.00e-01 [] (fixed)
τ = 3.00e+01 [d]
Parameters{Complex{Float64}}
xgeo = 2.17e+00 + 0.00e+00i [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00i [Myr] (fixed)
k = 0.00e+00 + 1.00e+01i [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00i [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00i [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01i [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00i [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01i [d⁻¹]
σ = 3.00e-01 + 0.00e+00i [] (fixed)
τ = 0.00e+00 + 3.00e+01i [d]
Parameters{Dual{Float64}}
xgeo = 2.17e+00 + 0.00e+00ε [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00ε [Myr] (fixed)
k = 0.00e+00 + 1.00e+01ε [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00ε [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00ε [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01ε [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00ε [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01ε [d⁻¹]
σ = 3.00e-01 + 0.00e+00ε [] (fixed)
τ = 0.00e+00 + 3.00e+01ε [d]
Parameters{Hyper{Float64}}
xgeo = 2.17e+00 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [Myr] (fixed)
k = 0.00e+00 + 1.00e+01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d⁻¹]
σ = 3.00e-01 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [] (fixed)
τ = 0.00e+00 + 3.00e+01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d]
Registering World Ocean Atlas data with DataDeps
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/StiyS/src/functions.jl:138
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "53a32321db4115a939f50c8d767f0df4e7263117e4afc8fd98ca861f67223eec"
└ @ DataDeps ~/.julia/packages/DataDeps/ai3FE/src/verification.jl:44
Reading NetCDF file
Rearranging data
Filtering data
Averaging data over each grid box
Setting μ = 0 and σ² = ∞ where no obs
Setting a realistic minimum for σ²
Test Summary: | Pass Total
Primeau's 6-box model | 84 84
Loading OCIM1 ✔
┌ Info: You are about to use OCIM1 model.
│ If you use it for research, please cite:
│
│ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.)
Test Summary: | Pass Total
OCIM1 | 19 19
Loading OCIM0.1 ✔
┌ Info: You are about to use OCIM0.1 model.
│ If you use it for research, please cite:
│
│ - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.)
Test Summary: | Pass Total
OCIM0.1 | 19 19
Testing AIBECS tests passed
Results with Julia v1.3.1-pre-7704df0a5a
Testing was successful .
Last evaluation was ago and took 12 minutes, 34 seconds.
Click here to download the log file.
Click here to show the log contents.
Resolving package versions...
Installed Ratios ────────────────────── v0.3.1
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed FunctionWrappers ──────────── v1.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed Unitful ───────────────────── v0.17.0
Installed DataStructures ────────────── v0.17.6
Installed AIBECS ────────────────────── v0.3.2
Installed IterativeSolvers ──────────── v0.8.1
Installed Compat ────────────────────── v2.2.0
Installed MbedTLS ───────────────────── v0.7.0
Installed Tables ────────────────────── v0.2.11
Installed SpecialFunctions ──────────── v0.9.0
Installed Flatten ───────────────────── v0.2.1
Installed DataFrames ────────────────── v0.19.4
Installed HyperDualNumbers ──────────── v4.0.0
Installed StaticArrays ──────────────── v0.12.1
Installed MacroTools ────────────────── v0.5.2
Installed DualMatrixTools ───────────── v1.2.5
Installed AxisAlgorithms ────────────── v1.0.0
Installed Roots ─────────────────────── v0.8.3
Installed OffsetArrays ──────────────── v0.11.2
Installed OceanGrids ────────────────── v0.1.3
Installed Calculus ──────────────────── v0.5.1
Installed BSON ──────────────────────── v0.2.4
Installed HTTP ──────────────────────── v0.8.8
Installed TableTraits ───────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed DataDeps ──────────────────── v0.7.1
Installed FieldMetadata ─────────────── v0.1.1
Installed DocStringExtensions ───────── v0.8.1
Installed PooledArrays ──────────────── v0.5.2
Installed BinaryProvider ────────────── v0.5.8
Installed MuladdMacro ───────────────── v0.2.1
Installed Parameters ────────────────── v0.12.0
Installed InvertedIndices ───────────── v1.0.0
Installed Requires ──────────────────── v0.5.2
Installed ArrayInterface ────────────── v2.0.0
Installed Distances ─────────────────── v0.8.2
Installed IniFile ───────────────────── v0.5.0
Installed RecursiveFactorization ────── v0.1.0
Installed UnitfulAstro ──────────────── v0.4.0
Installed RecursiveArrayTools ───────── v1.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed CategoricalArrays ─────────── v0.7.3
Installed RecipesBase ───────────────── v0.7.0
Installed DiffEqBase ────────────────── v6.7.0
Installed Interpolations ────────────── v0.12.5
Installed Reexport ──────────────────── v0.2.0
Installed UnitfulAngles ─────────────── v0.5.0
Installed DataAPI ───────────────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed OrderedCollections ────────── v1.1.0
Installed DualNumbers ───────────────── v0.6.2
Installed TreeViews ─────────────────── v0.3.0
Installed JSON ──────────────────────── v0.21.0
Installed Parsers ───────────────────── v0.3.10
Installed DiffEqDiffTools ───────────── v1.5.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed HyperDualMatrixTools ──────── v2.0.2
Updating `~/.julia/environments/v1.3/Project.toml`
[ace601d6] + AIBECS v0.3.2
Updating `~/.julia/environments/v1.3/Manifest.toml`
[ace601d6] + AIBECS v0.3.2
[4fba245c] + ArrayInterface v2.0.0
[13072b0f] + AxisAlgorithms v1.0.0
[fbb218c0] + BSON v0.2.4
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.3
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[124859b0] + DataDeps v0.7.1
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.7.0
[01453d9d] + DiffEqDiffTools v1.5.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[31f4e45d] + DualMatrixTools v1.2.5
[fa6b7ba4] + DualNumbers v0.6.2
[bf96fef3] + FieldMetadata v0.1.1
[4c728ea3] + Flatten v0.2.1
[069b7b12] + FunctionWrappers v1.0.0
[cd3eb016] + HTTP v0.8.8
[04d39a18] + HyperDualMatrixTools v2.0.2
[50ceba7f] + HyperDualNumbers v4.0.0
[83e8ac13] + IniFile v0.5.0
[a98d9a8b] + Interpolations v0.12.5
[41ab1584] + InvertedIndices v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.2
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.1
[77ba4419] + NaNMath v0.3.3
[cfe838f4] + OceanGrids v0.1.3
[6fe1bfb0] + OffsetArrays v0.11.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.3
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[a2a6695c] + TreeViews v0.3.0
[1986cc42] + Unitful v0.17.0
[6fb2a4bd] + UnitfulAngles v0.5.0
[6112ee07] + UnitfulAstro v0.4.0
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS → `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Testing AIBECS
Resolving package versions...
Installed URIParser ──────────── v0.4.0
Installed DiffResults ────────── v0.0.4
Installed Conda ──────────────── v1.3.0
Installed WorldOceanAtlasTools ─ v0.3.3
Installed ForwardDiff ────────── v0.10.7
Installed BinDeps ────────────── v0.8.10
Installed CFTime ─────────────── v0.0.3
Installed StatsBase ──────────── v0.32.0
Installed CommonSubexpressions ─ v0.2.0
Installed Match ──────────────── v1.0.2
Installed DiffRules ──────────── v0.1.0
Installed VersionParsing ─────── v1.1.3
Installed CondaBinDeps ───────── v0.1.0
Installed NearestNeighbors ───── v0.4.4
Installed NCDatasets ─────────── v0.9.5
Building Conda ─────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Building NCDatasets → `~/.julia/packages/NCDatasets/uW2kc/deps/build.log`
Status `/tmp/jl_1mbhWH/Manifest.toml`
[ace601d6] AIBECS v0.3.2
[4fba245c] ArrayInterface v2.0.0
[13072b0f] AxisAlgorithms v1.0.0
[fbb218c0] BSON v0.2.4
[9e28174c] BinDeps v0.8.10
[b99e7846] BinaryProvider v0.5.8
[179af706] CFTime v0.0.3
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.3
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.3.0
[a9693cdc] CondaBinDeps v0.1.0
[9a962f9c] DataAPI v1.1.0
[124859b0] DataDeps v0.7.1
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.6
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.7.0
[01453d9d] DiffEqDiffTools v1.5.0
[163ba53b] DiffResults v0.0.4
[b552c78f] DiffRules v0.1.0
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[31f4e45d] DualMatrixTools v1.2.5
[fa6b7ba4] DualNumbers v0.6.2
[bf96fef3] FieldMetadata v0.1.1
[4c728ea3] Flatten v0.2.1
[f6369f11] ForwardDiff v0.10.7
[069b7b12] FunctionWrappers v1.0.0
[cd3eb016] HTTP v0.8.8
[04d39a18] HyperDualMatrixTools v2.0.2
[50ceba7f] HyperDualNumbers v4.0.0
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.5
[41ab1584] InvertedIndices v1.0.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.2
[7eb4fadd] Match v1.0.2
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.1
[85f8d34a] NCDatasets v0.9.5
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[cfe838f4] OceanGrids v0.1.3
[6fe1bfb0] OffsetArrays v0.11.2
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.2
[c84ed2f1] Ratios v0.3.1
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v1.2.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v0.8.3
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.0
[1986cc42] Unitful v0.17.0
[6fb2a4bd] UnitfulAngles v0.5.0
[6112ee07] UnitfulAstro v0.4.0
[81def892] VersionParsing v1.1.3
[efce3f68] WoodburyMatrices v0.4.1
[04f20302] WorldOceanAtlasTools v0.3.3
[2a0f44e3] Base64 [`@stdlib/Base64`]
[ade2ca70] Dates [`@stdlib/Dates`]
[8bb1440f] DelimitedFiles [`@stdlib/DelimitedFiles`]
[8ba89e20] Distributed [`@stdlib/Distributed`]
[9fa8497b] Future [`@stdlib/Future`]
[b77e0a4c] InteractiveUtils [`@stdlib/InteractiveUtils`]
[76f85450] LibGit2 [`@stdlib/LibGit2`]
[8f399da3] Libdl [`@stdlib/Libdl`]
[37e2e46d] LinearAlgebra [`@stdlib/LinearAlgebra`]
[56ddb016] Logging [`@stdlib/Logging`]
[d6f4376e] Markdown [`@stdlib/Markdown`]
[a63ad114] Mmap [`@stdlib/Mmap`]
[44cfe95a] Pkg [`@stdlib/Pkg`]
[de0858da] Printf [`@stdlib/Printf`]
[3fa0cd96] REPL [`@stdlib/REPL`]
[9a3f8284] Random [`@stdlib/Random`]
[ea8e919c] SHA [`@stdlib/SHA`]
[9e88b42a] Serialization [`@stdlib/Serialization`]
[1a1011a3] SharedArrays [`@stdlib/SharedArrays`]
[6462fe0b] Sockets [`@stdlib/Sockets`]
[2f01184e] SparseArrays [`@stdlib/SparseArrays`]
[10745b16] Statistics [`@stdlib/Statistics`]
[4607b0f0] SuiteSparse [`@stdlib/SuiteSparse`]
[8dfed614] Test [`@stdlib/Test`]
[cf7118a7] UUIDs [`@stdlib/UUIDs`]
[4ec0a83e] Unicode [`@stdlib/Unicode`]
Creating 6-box model ✔
┌ Info: You are about to use the 3-box model of Archer et al. [2000].
│ If you use it for research, please cite:
│
│ - Archer, D. E., Eshel, G., Winguth, A., Broecker, W., Pierrehumbert, R., Tobis, M., and Jacob, R. (2000), Atmospheric pCO2 sensitivity to the biological pump in the ocean, Global Biogeochem. Cycles, 14 (4), 1219–1230, doi:10.1029/1999GB001216.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
│ (Look for the "Archer_etal_2000" key.)
│
│ Note that although this model represents the 3-box model of Archer et al. [2000],
│ it effectively requires 6 boxes to represent in the AIBECS,
│ so that particulate sinking flux divergence operators can be built.
└ (See the comments at the start of the Archer_etal_2000.jl file for details.)
Test Summary: | Pass Total
Archer_etal_2000 3-box model | 19 19
Creating François Primeau's 2x2x2 model ✔
You should see a warning below:
┌ Warning: The name `Parameters` is already used.
│ Will error if you changed the set of parameters.
│ You can specify the name of the new parameters type via the syntax:
│
│ julia> initialize_Parameters_type(t, PName)
│
│ See examples in the documentation of `initialize_Parameters_type`.
│ (Type `?` and then `initialize_Parameters_type` to see the help.)
└ @ AIBECS ~/.julia/packages/AIBECS/4OgYz/src/Parameters.jl:116
Parameters{Float64}
xgeo = 2.17e+00 [mmol m⁻³] (fixed)
τgeo = 1.00e+00 [Myr] (fixed)
k = 1.00e+01 [μmol m⁻³]
z₀ = 8.00e+01 [m] (fixed)
w₀ = 1.00e+00 [m d⁻¹]
w′ = 2.24e-01 [d⁻¹]
κDOP = 4.00e+00 [yr⁻¹]
κPOP = 1.90e-01 [d⁻¹]
σ = 3.00e-01 [] (fixed)
τ = 3.00e+01 [d]
Parameters{Complex{Float64}}
xgeo = 2.17e+00 + 0.00e+00i [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00i [Myr] (fixed)
k = 0.00e+00 + 1.00e+01i [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00i [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00i [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01i [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00i [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01i [d⁻¹]
σ = 3.00e-01 + 0.00e+00i [] (fixed)
τ = 0.00e+00 + 3.00e+01i [d]
Parameters{Dual{Float64}}
xgeo = 2.17e+00 + 0.00e+00ε [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00ε [Myr] (fixed)
k = 0.00e+00 + 1.00e+01ε [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00ε [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00ε [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01ε [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00ε [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01ε [d⁻¹]
σ = 3.00e-01 + 0.00e+00ε [] (fixed)
τ = 0.00e+00 + 3.00e+01ε [d]
Parameters{Hyper{Float64}}
xgeo = 2.17e+00 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [mmol m⁻³] (fixed)
τgeo = 1.00e+00 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [Myr] (fixed)
k = 0.00e+00 + 1.00e+01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [μmol m⁻³]
z₀ = 8.00e+01 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [m] (fixed)
w₀ = 0.00e+00 + 1.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [m d⁻¹]
w′ = 0.00e+00 + 2.24e-01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d⁻¹]
κDOP = 0.00e+00 + 4.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [yr⁻¹]
κPOP = 0.00e+00 + 1.90e-01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d⁻¹]
σ = 3.00e-01 + 0.00e+00ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [] (fixed)
τ = 0.00e+00 + 3.00e+01ε₁ + 0.00e+00ε₂ + 0.00e+00ε₁ε₂ [d]
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/StiyS/src/functions.jl:138
Registering World Ocean Atlas data with DataDeps
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "53a32321db4115a939f50c8d767f0df4e7263117e4afc8fd98ca861f67223eec"
└ @ DataDeps ~/.julia/packages/DataDeps/ai3FE/src/verification.jl:44
Reading NetCDF file
Rearranging data
Filtering data
Averaging data over each grid box
Setting μ = 0 and σ² = ∞ where no obs
Setting a realistic minimum for σ²
Test Summary: | Pass Total
Primeau's 6-box model | 84 84
Loading OCIM1 ✔
┌ Info: You are about to use OCIM1 model.
│ If you use it for research, please cite:
│
│ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.)
Test Summary: | Pass Total
OCIM1 | 19 19
Loading OCIM0.1┌ Info: You are about to use OCIM0.1 model.
│ If you use it for research, please cite:
│
│ - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.)
✔
Test Summary: | Pass Total
OCIM0.1 | 19 19
Testing AIBECS tests passed